Wall clock time and date at job start Mon Mar 30 2020 01:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48515 * 110.99916 * 2 1 4 4 C 1.54292 * 104.70891 * 159.28600 * 3 2 1 5 5 C 1.52998 * 112.37375 * 213.49309 * 4 3 2 6 6 C 1.54279 * 108.82346 * 87.77481 * 4 3 2 7 7 N 1.48523 * 104.71937 * 272.16985 * 6 4 3 8 8 C 1.46905 * 111.00023 * 200.73564 * 7 6 4 9 9 C 1.53000 * 109.47123 * 285.40389 * 8 7 6 10 10 H 1.09002 * 109.47398 * 59.99875 * 9 8 7 11 11 O 1.42903 * 109.46726 * 299.99631 * 9 8 7 12 12 C 1.50699 * 109.47083 * 179.97438 * 9 8 7 13 13 H 1.08000 * 119.99792 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99902 * 179.97438 * 12 9 8 15 15 N 1.31522 * 119.99730 * 179.97438 * 14 12 9 16 16 Si 1.86801 * 120.00223 * 0.02562 * 14 12 9 17 17 H 1.48501 * 109.46854 * 89.99533 * 16 14 12 18 18 H 1.48495 * 109.46995 * 209.99565 * 16 14 12 19 19 H 1.48503 * 109.46814 * 329.99605 * 16 14 12 20 20 C 1.48506 * 104.20848 * 320.28311 * 7 6 4 21 21 C 1.54296 * 104.70888 * 39.73539 * 20 7 6 22 22 C 1.52997 * 112.37878 * 212.89474 * 21 20 7 23 23 C 1.48511 * 111.00004 * 115.40373 * 2 1 3 24 24 H 1.08999 * 109.47042 * 304.59410 * 1 2 3 25 25 H 1.08997 * 109.47402 * 64.59824 * 1 2 3 26 26 H 1.09007 * 109.47177 * 184.59906 * 1 2 3 27 27 H 1.09003 * 110.38915 * 278.09141 * 3 2 1 28 28 H 1.08997 * 110.39060 * 40.35995 * 3 2 1 29 29 H 1.09003 * 109.46839 * 178.09278 * 5 4 3 30 30 H 1.08997 * 109.47050 * 298.08825 * 5 4 3 31 31 H 1.08993 * 109.47317 * 58.09252 * 5 4 3 32 32 H 1.09000 * 110.38672 * 153.36594 * 6 4 3 33 33 H 1.08996 * 110.38923 * 30.98284 * 6 4 3 34 34 H 1.08992 * 109.47078 * 165.40076 * 8 7 6 35 35 H 1.09004 * 109.46829 * 45.39722 * 8 7 6 36 36 H 0.96700 * 114.00234 * 300.00043 * 11 9 8 37 37 H 0.96999 * 119.99784 * 180.02562 * 15 14 12 38 38 H 1.08999 * 110.39369 * 158.54408 * 20 7 6 39 39 H 1.09004 * 110.39249 * 280.93312 * 20 7 6 40 40 H 1.09003 * 109.47120 * 58.98774 * 22 21 20 41 41 H 1.08993 * 109.46893 * 178.98556 * 22 21 20 42 42 H 1.08998 * 109.47241 * 298.98715 * 22 21 20 43 43 H 1.08999 * 110.39024 * 81.92959 * 23 2 1 44 44 H 1.08991 * 110.39000 * 319.54396 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3865 0.0000 4 6 3.4448 1.2520 0.5279 5 6 3.8792 2.4661 1.3514 6 6 4.3853 0.9677 -0.6616 7 7 4.3753 -0.5105 -0.8056 8 6 5.5588 -0.9758 -1.5411 9 6 5.3942 -0.6542 -3.0279 10 1 5.2865 0.4228 -3.1569 11 8 4.2306 -1.3132 -3.5318 12 6 6.6085 -1.1309 -3.7824 13 1 7.4169 -1.6146 -3.2542 14 6 6.6874 -0.9497 -5.1469 15 7 7.7474 -1.3653 -5.8053 16 14 5.2894 -0.1125 -6.0603 17 1 5.5321 1.3519 -6.1017 18 1 5.2165 -0.6416 -7.4459 19 1 4.0084 -0.3824 -5.3593 20 6 4.3858 -1.0129 0.5919 21 6 3.4446 -0.0600 1.3579 22 6 3.8833 0.1505 2.8084 23 6 2.0012 -0.5948 1.2524 24 1 -0.3633 0.5835 0.8460 25 1 -0.3634 0.4408 -0.9283 26 1 -0.3634 -1.0244 0.0824 27 1 2.0031 1.7926 -1.0116 28 1 1.4105 2.0200 0.6616 29 1 4.8898 2.3070 1.7277 30 1 3.8615 3.3565 0.7230 31 1 3.1960 2.5995 2.1901 32 1 5.3928 1.3209 -0.4420 33 1 4.0054 1.4400 -1.5675 34 1 5.6665 -2.0527 -1.4121 35 1 6.4463 -0.4731 -1.1568 36 1 4.2574 -2.2763 -3.4495 37 1 7.8030 -1.2375 -6.7652 38 1 4.0065 -2.0340 0.6313 39 1 5.3933 -0.9649 1.0052 40 1 4.8920 0.5632 2.8268 41 1 3.1985 0.8427 3.2982 42 1 3.8719 -0.8046 3.3337 43 1 2.0034 -1.6827 1.1851 44 1 1.4116 -0.2676 2.1087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931313829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:36 Heat of formation + Delta-G solvation = -54.850291 kcal Electronic energy + Delta-G solvation = -22398.484648 eV Core-core repulsion = 19349.809665 eV Total energy + Delta-G solvation = -3048.674983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.73776 -38.44234 -36.72669 -34.43993 -34.31298 -33.07824 -30.60897 -28.70164 -27.41718 -26.94889 -26.77958 -24.50944 -22.98447 -21.87296 -21.48029 -19.32011 -19.11245 -17.12785 -16.83207 -16.31175 -16.06430 -16.01150 -15.87088 -15.30798 -14.93437 -14.71244 -14.59106 -14.50708 -14.36171 -14.00060 -13.53502 -13.21526 -13.00688 -12.91593 -12.77575 -12.70458 -12.60185 -12.44474 -12.29772 -12.09385 -11.76740 -11.66624 -11.56559 -11.20580 -11.19713 -11.02149 -10.80070 -10.06505 -9.19732 -9.12891 -8.35955 -6.49824 1.38179 1.43629 1.76586 2.44668 3.02449 3.07748 3.29922 3.37441 3.50873 3.77816 4.13433 4.14341 4.23167 4.27717 4.31226 4.39390 4.48312 4.54182 4.58400 4.67519 4.70055 4.74443 4.76897 4.84203 4.87445 4.92765 4.95174 5.01462 5.01645 5.05831 5.12544 5.20088 5.26872 5.36506 5.43387 5.47173 5.52067 6.01405 6.08831 6.16767 6.21936 6.28438 6.62489 7.24142 7.40757 8.78388 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025217 B = 0.005717 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.100087 B = 4896.586060 C = 5256.244219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.522 5.522 3 C 0.054 3.946 4 C -0.062 4.062 5 C -0.125 4.125 6 C 0.049 3.951 7 N -0.490 5.490 8 C 0.044 3.956 9 C 0.217 3.783 10 H 0.039 0.961 11 O -0.570 6.570 12 C -0.566 4.566 13 H 0.036 0.964 14 C 0.031 3.969 15 N -0.940 5.940 16 Si 0.937 3.063 17 H -0.286 1.286 18 H -0.295 1.295 19 H -0.208 1.208 20 C 0.046 3.954 21 C -0.060 4.060 22 C -0.125 4.125 23 C 0.055 3.945 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.031 0.969 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.022 0.978 36 H 0.363 0.637 37 H 0.267 0.733 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.748 5.909 19.436 24.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.245 5.245 3 C -0.073 4.073 4 C -0.063 4.063 5 C -0.183 4.183 6 C -0.080 4.080 7 N -0.212 5.212 8 C -0.085 4.085 9 C 0.159 3.841 10 H 0.057 0.943 11 O -0.375 6.375 12 C -0.604 4.604 13 H 0.054 0.946 14 C -0.169 4.169 15 N -0.579 5.579 16 Si 0.762 3.238 17 H -0.213 1.213 18 H -0.222 1.222 19 H -0.130 1.130 20 C -0.082 4.082 21 C -0.061 4.061 22 C -0.182 4.182 23 C -0.072 4.072 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.209 0.791 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.179 5.986 18.365 23.962 hybrid contribution 0.945 0.202 0.002 0.967 sum -13.234 6.188 18.367 23.469 Atomic orbital electron populations 1.22490 0.87547 1.02096 1.00924 1.65265 1.08266 1.15405 1.35543 1.23051 0.93951 0.90182 1.00162 1.22022 0.94565 0.95745 0.93966 1.21682 1.01816 0.95406 0.99410 1.23105 0.97407 0.89592 0.97856 1.65327 1.37231 1.06215 1.12460 1.22656 0.90361 0.99706 0.95769 1.19339 0.82931 0.92659 0.89199 0.94287 1.86610 1.43156 1.23117 1.84636 1.21882 1.04524 1.40425 0.93577 0.94596 1.25805 0.97771 0.94605 0.98699 1.70083 1.30837 1.47946 1.09057 0.86001 0.83627 0.77430 0.76754 1.21303 1.22218 1.12994 1.23178 0.97598 0.99135 0.88294 1.22027 0.94910 0.93611 0.95601 1.21674 1.01639 1.02536 0.92373 1.23080 0.93682 0.99789 0.90697 0.94574 0.91903 0.91167 0.91995 0.92719 0.91931 0.92197 0.90448 0.95040 0.92349 0.91784 0.95940 0.79068 0.92449 0.90646 0.94711 0.92124 0.90805 0.91491 0.90826 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.53 127.69 1.22 1.58 16 2 N -0.52 -13.33 5.50 -908.26 -5.00 -18.32 16 3 C 0.05 1.31 5.49 86.43 0.47 1.78 16 4 C -0.06 -1.45 1.07 -50.54 -0.05 -1.51 16 5 C -0.13 -2.21 7.68 71.98 0.55 -1.66 16 6 C 0.05 1.55 4.94 86.42 0.43 1.98 16 7 N -0.49 -17.11 5.05 -882.12 -4.45 -21.56 16 8 C 0.04 1.80 4.43 86.30 0.38 2.19 16 9 C 0.22 10.54 2.37 29.85 0.07 10.61 16 10 H 0.04 1.99 6.89 -2.39 -0.02 1.97 16 11 O -0.57 -26.99 10.01 -148.98 -1.49 -28.48 16 12 C -0.57 -32.84 9.34 25.60 0.24 -32.60 16 13 H 0.04 2.27 7.99 -2.91 -0.02 2.25 16 14 C 0.03 1.84 5.47 84.65 0.46 2.30 16 15 N -0.94 -59.66 13.96 21.45 0.30 -59.36 16 16 Si 0.94 47.10 26.99 68.60 1.85 48.95 16 17 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 18 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 19 H -0.21 -10.20 5.31 99.48 0.53 -9.67 16 20 C 0.05 1.28 5.45 86.43 0.47 1.75 16 21 C -0.06 -1.31 1.07 -50.53 -0.05 -1.37 16 22 C -0.12 -1.93 7.65 71.98 0.55 -1.38 16 23 C 0.06 1.19 5.49 86.43 0.47 1.66 16 24 H 0.04 0.61 7.97 -2.39 -0.02 0.59 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.06 1.71 7.48 -2.39 -0.02 1.70 16 28 H 0.05 1.08 7.74 -2.39 -0.02 1.06 16 29 H 0.06 1.08 7.20 -2.39 -0.02 1.07 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.06 7.24 -2.39 -0.02 1.04 16 32 H 0.03 1.02 7.60 -2.39 -0.02 1.00 16 33 H 0.06 2.10 7.18 -2.39 -0.02 2.08 16 34 H 0.06 2.63 8.08 -2.39 -0.02 2.61 16 35 H 0.02 0.95 7.77 -2.39 -0.02 0.93 16 36 H 0.36 15.62 9.04 -74.06 -0.67 14.95 16 37 H 0.27 15.90 8.31 -92.71 -0.77 15.12 16 38 H 0.08 2.10 7.48 -2.39 -0.02 2.08 16 39 H 0.03 0.96 7.84 -2.38 -0.02 0.94 16 40 H 0.06 0.96 7.20 -2.39 -0.02 0.94 16 41 H 0.07 0.92 7.25 -2.39 -0.02 0.91 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 1.67 7.48 -2.39 -0.02 1.65 16 44 H 0.05 0.96 7.81 -2.39 -0.02 0.94 16 Total: -1.00 -68.66 329.14 -3.46 -72.12 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.11 Total: 21.31 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 5.21 Total: -14.66 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -9.15 Total: -99.24 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -1.49 Total: -28.48 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.85 Total: 48.95 kcal Total: -68.66 -3.46 -72.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931313829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.269 kcal (2) G-P(sol) polarization free energy of solvation -68.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds