Wall clock time and date at job start Mon Mar 30 2020 01:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46889 * 109.52356 * 2 1 4 4 C 1.47484 * 111.00508 * 78.28244 * 3 2 1 5 5 C 1.53511 * 87.93491 * 138.70061 * 4 3 2 6 6 C 1.47485 * 111.00150 * 174.25562 * 3 2 1 7 7 C 1.53116 * 109.51871 * 239.87100 * 2 1 3 8 8 C 1.53034 * 109.28109 * 297.74807 * 7 2 1 9 9 N 1.46853 * 109.52638 * 300.82667 * 8 7 2 10 10 C 1.46904 * 110.99983 * 185.83611 * 9 8 7 11 11 C 1.53002 * 109.46778 * 169.99688 * 10 9 8 12 12 H 1.08997 * 109.46922 * 59.99963 * 11 10 9 13 13 O 1.42899 * 109.47154 * 299.99736 * 11 10 9 14 14 C 1.50704 * 109.46834 * 180.02562 * 11 10 9 15 15 H 1.07996 * 119.99790 * 0.02562 * 14 11 10 16 16 C 1.37872 * 119.99643 * 179.97438 * 14 11 10 17 17 N 1.31516 * 120.00569 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99765 * 179.97438 * 16 14 11 19 19 H 1.48508 * 109.46757 * 90.00329 * 18 16 14 20 20 H 1.48500 * 109.47255 * 210.00172 * 18 16 14 21 21 H 1.48499 * 109.47155 * 330.00676 * 18 16 14 22 22 C 1.46839 * 111.19772 * 61.73608 * 9 8 7 23 23 C 1.53039 * 109.52818 * 298.26214 * 22 9 8 24 24 H 1.08999 * 109.47115 * 178.89307 * 1 2 3 25 25 H 1.09002 * 109.46806 * 298.89203 * 1 2 3 26 26 H 1.09000 * 109.46839 * 58.88672 * 1 2 3 27 27 H 1.08994 * 113.47645 * 253.47465 * 4 3 2 28 28 H 1.09001 * 113.46977 * 23.93647 * 4 3 2 29 29 H 1.08994 * 114.17693 * 220.33340 * 5 4 3 30 30 H 1.09000 * 114.16961 * 87.62086 * 5 4 3 31 31 H 1.08999 * 113.47383 * 336.06156 * 6 3 2 32 32 H 1.08997 * 113.47538 * 106.46766 * 6 3 2 33 33 H 1.09000 * 109.50037 * 177.81390 * 7 2 1 34 34 H 1.08990 * 109.50774 * 57.69539 * 7 2 1 35 35 H 1.08999 * 109.46629 * 180.80487 * 8 7 2 36 36 H 1.09001 * 109.45253 * 60.83606 * 8 7 2 37 37 H 1.08997 * 109.46714 * 50.00190 * 10 9 8 38 38 H 1.08997 * 109.46925 * 289.99823 * 10 9 8 39 39 H 0.96702 * 114.00710 * 300.00645 * 13 11 10 40 40 H 0.96992 * 120.00686 * 179.97438 * 17 16 14 41 41 H 1.09007 * 109.46363 * 58.27767 * 22 9 8 42 42 H 1.09001 * 109.46242 * 178.24462 * 22 9 8 43 43 H 1.08999 * 109.49939 * 299.23974 * 23 22 9 44 44 H 1.08997 * 109.50176 * 179.12063 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0210 1.3844 0.0000 4 6 1.9341 1.9761 1.3481 5 6 3.3104 2.6087 1.0987 6 6 3.4888 1.4248 0.1378 7 6 2.0416 -0.7244 -1.2482 8 6 1.5766 -2.1819 -1.2128 9 7 2.0924 -2.8324 -0.0014 10 6 1.7822 -4.2683 -0.0022 11 6 2.5406 -4.9545 1.1357 12 1 2.2393 -4.5182 2.0881 13 8 3.9455 -4.7706 0.9507 14 6 2.2228 -6.4277 1.1346 15 1 1.5479 -6.8339 0.3958 16 6 2.7947 -7.2569 2.0760 17 7 3.6170 -6.7623 2.9753 18 14 2.4003 -9.0828 2.0750 19 1 3.3754 -9.7993 1.2140 20 1 2.4844 -9.6082 3.4614 21 1 1.0276 -9.2925 1.5486 22 6 1.5766 -2.1833 1.2105 23 6 2.0417 -0.7257 1.2475 24 1 -0.3633 -1.0275 -0.0199 25 1 -0.3633 0.4965 0.8998 26 1 -0.3633 0.5310 -0.8798 27 1 1.1322 2.7073 1.4506 28 1 1.9351 1.2357 2.1481 29 1 3.9750 2.5866 1.9623 30 1 3.2723 3.5807 0.6069 31 1 3.9047 0.5373 0.6148 32 1 4.0045 1.6877 -0.7857 33 1 3.1309 -0.6905 -1.2678 34 1 1.6458 -0.2376 -2.1394 35 1 1.9512 -2.7042 -2.0931 36 1 0.4871 -2.2153 -1.2071 37 1 2.0835 -4.7046 -0.9546 38 1 0.7105 -4.4086 0.1389 39 1 4.2842 -5.1352 0.1215 40 1 4.0190 -7.3456 3.6378 41 1 0.4871 -2.2167 1.2048 42 1 1.9513 -2.7065 2.0902 43 1 3.1310 -0.6918 1.2671 44 1 1.6457 -0.2399 2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931700598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:24 Heat of formation + Delta-G solvation = 2.157262 kcal Electronic energy + Delta-G solvation = -22031.193292 eV Core-core repulsion = 18984.990342 eV Total energy + Delta-G solvation = -3046.202950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.09728 -38.11039 -35.62821 -33.34329 -32.05688 -30.75342 -29.09847 -27.54098 -27.08805 -25.72732 -24.31107 -23.13856 -21.96999 -20.22761 -19.96582 -17.76911 -17.15010 -16.57347 -15.72485 -14.90157 -14.76716 -14.71817 -14.54763 -14.26216 -13.93706 -13.79787 -13.39867 -13.08530 -12.63517 -12.30357 -12.14046 -11.83357 -11.71210 -11.57101 -11.30382 -11.07043 -10.92734 -10.90772 -10.79979 -10.70104 -10.60814 -10.45728 -10.30462 -10.05119 -9.94328 -8.97985 -8.65235 -8.54191 -8.07400 -7.57350 -5.99916 -4.18271 3.27403 3.34454 3.36888 3.97248 4.32209 4.43480 4.49194 4.73679 4.79275 4.96554 5.05389 5.25237 5.26443 5.27879 5.47629 5.49803 5.53955 5.63048 5.67348 5.71958 5.74792 5.84005 5.86544 5.95878 6.00742 6.04293 6.07257 6.14629 6.19674 6.21473 6.32852 6.41352 6.50691 6.54581 6.64372 6.83514 7.10850 7.58669 7.67383 7.79885 7.89995 8.21700 8.85860 9.47496 9.63941 11.04199 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035615 B = 0.004308 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.000446 B = 6497.805724 C = 6762.681651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.074 3.926 3 N -0.465 5.465 4 C -0.015 4.015 5 C -0.148 4.148 6 C -0.009 4.009 7 C -0.097 4.097 8 C 0.054 3.946 9 N -0.525 5.525 10 C 0.031 3.969 11 C 0.238 3.762 12 H 0.053 0.947 13 O -0.554 6.554 14 C -0.575 4.575 15 H 0.054 0.946 16 C 0.080 3.920 17 N -0.859 5.859 18 Si 0.888 3.112 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.061 3.939 23 C -0.144 4.144 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.027 0.973 37 H 0.063 0.937 38 H 0.024 0.976 39 H 0.342 0.658 40 H 0.260 0.740 41 H 0.026 0.974 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.422 15.733 -5.084 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.016 4.016 3 N -0.186 5.186 4 C -0.144 4.144 5 C -0.186 4.186 6 C -0.137 4.137 7 C -0.135 4.135 8 C -0.075 4.075 9 N -0.250 5.250 10 C -0.096 4.096 11 C 0.180 3.820 12 H 0.071 0.929 13 O -0.356 6.356 14 C -0.613 4.613 15 H 0.072 0.928 16 C -0.126 4.126 17 N -0.495 5.495 18 Si 0.715 3.285 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.068 4.068 23 C -0.183 4.183 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.185 0.815 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.231 16.346 -4.925 17.374 hybrid contribution -0.849 -1.993 0.137 2.170 sum -4.079 14.353 -4.788 15.671 Atomic orbital electron populations 1.21825 0.93906 1.01821 1.01707 1.21533 0.95670 0.88688 0.95681 1.69175 1.08469 1.15751 1.25219 1.23990 0.98119 0.99200 0.93090 1.23080 0.97213 0.98563 0.99733 1.23876 0.91421 0.98434 1.00010 1.21526 1.01396 0.94263 0.96319 1.22107 0.96850 0.94300 0.94231 1.61936 1.59045 1.03385 1.00607 1.23064 0.98323 0.85847 1.02378 1.19309 0.78811 0.92392 0.91516 0.92909 1.86550 1.24911 1.81826 1.42285 1.21672 1.29745 0.93886 1.16027 0.92782 1.25011 0.94238 0.98486 0.94823 1.70077 1.28250 1.35083 1.16058 0.86692 0.78807 0.85641 0.77333 1.20500 1.21121 1.19898 1.22026 0.96393 0.93540 0.94810 1.22363 1.02231 0.96078 0.97578 0.91903 0.93067 0.92282 0.90433 0.89877 0.90871 0.89451 0.89948 0.90252 0.91202 0.91588 0.91156 0.95448 0.91896 0.95737 0.81477 0.93015 0.95565 0.89751 0.90342 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.04 37.16 0.30 -1.36 16 2 C 0.07 0.95 0.47 -131.48 -0.06 0.89 16 3 N -0.46 -5.59 6.14 -228.73 -1.40 -6.99 16 4 C -0.02 -0.16 7.05 -7.54 -0.05 -0.21 16 5 C -0.15 -1.40 8.47 -26.20 -0.22 -1.62 16 6 C -0.01 -0.10 6.41 -7.53 -0.05 -0.15 16 7 C -0.10 -1.31 4.91 -26.65 -0.13 -1.44 16 8 C 0.05 0.81 5.21 -3.83 -0.02 0.79 16 9 N -0.53 -9.48 4.52 -234.67 -1.06 -10.54 16 10 C 0.03 0.65 4.56 -3.82 -0.02 0.63 16 11 C 0.24 6.00 2.70 -27.88 -0.08 5.93 16 12 H 0.05 1.47 6.43 -51.93 -0.33 1.13 16 13 O -0.55 -14.46 12.59 -35.23 -0.44 -14.91 16 14 C -0.57 -15.78 8.76 -34.44 -0.30 -16.08 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 17 N -0.86 -25.43 12.84 55.43 0.71 -24.72 16 18 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 22 C 0.06 1.04 5.04 -3.84 -0.02 1.02 16 23 C -0.14 -2.04 3.84 -26.65 -0.10 -2.14 16 24 H 0.06 0.82 4.92 -51.93 -0.26 0.56 16 25 H 0.05 0.60 7.85 -51.93 -0.41 0.19 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.89 4.92 -51.93 -0.26 0.64 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.01 5.45 -51.93 -0.28 0.73 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.00 7.31 -51.93 -0.38 0.62 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.04 8.02 -51.93 -0.42 0.62 16 36 H 0.03 0.41 6.49 -51.93 -0.34 0.07 16 37 H 0.06 1.27 7.99 -51.93 -0.41 0.86 16 38 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 39 H 0.34 8.08 9.04 45.56 0.41 8.49 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.03 0.44 6.54 -51.92 -0.34 0.10 16 42 H 0.08 1.67 6.21 -51.93 -0.32 1.34 16 43 H 0.08 1.19 5.75 -51.93 -0.30 0.90 16 44 H 0.07 0.89 5.84 -51.93 -0.30 0.58 16 LS Contribution 323.59 15.07 4.88 4.88 Total: -1.00 -29.74 323.59 -9.63 -39.36 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.43 Total: 8.38 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -0.85 Total: -11.58 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -1.75 Total: -42.25 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.44 Total: -14.91 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.74 -9.63 -39.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931700598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.520 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds