Wall clock time and date at job start Mon Mar 30 2020 01:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46889 * 109.52356 * 2 1 4 4 C 1.47484 * 111.00508 * 78.28244 * 3 2 1 5 5 C 1.53511 * 87.93491 * 138.70061 * 4 3 2 6 6 C 1.47485 * 111.00150 * 174.25562 * 3 2 1 7 7 C 1.53116 * 109.51871 * 239.87100 * 2 1 3 8 8 C 1.53034 * 109.28109 * 297.74807 * 7 2 1 9 9 N 1.46853 * 109.52638 * 300.82667 * 8 7 2 10 10 C 1.46904 * 110.99983 * 185.83611 * 9 8 7 11 11 C 1.53002 * 109.46778 * 169.99688 * 10 9 8 12 12 H 1.08997 * 109.46922 * 59.99963 * 11 10 9 13 13 O 1.42899 * 109.47154 * 299.99736 * 11 10 9 14 14 C 1.50704 * 109.46834 * 180.02562 * 11 10 9 15 15 H 1.07996 * 119.99790 * 0.02562 * 14 11 10 16 16 C 1.37872 * 119.99643 * 179.97438 * 14 11 10 17 17 N 1.31516 * 120.00569 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99765 * 179.97438 * 16 14 11 19 19 H 1.48508 * 109.46757 * 90.00329 * 18 16 14 20 20 H 1.48500 * 109.47255 * 210.00172 * 18 16 14 21 21 H 1.48499 * 109.47155 * 330.00676 * 18 16 14 22 22 C 1.46839 * 111.19772 * 61.73608 * 9 8 7 23 23 C 1.53039 * 109.52818 * 298.26214 * 22 9 8 24 24 H 1.08999 * 109.47115 * 178.89307 * 1 2 3 25 25 H 1.09002 * 109.46806 * 298.89203 * 1 2 3 26 26 H 1.09000 * 109.46839 * 58.88672 * 1 2 3 27 27 H 1.08994 * 113.47645 * 253.47465 * 4 3 2 28 28 H 1.09001 * 113.46977 * 23.93647 * 4 3 2 29 29 H 1.08994 * 114.17693 * 220.33340 * 5 4 3 30 30 H 1.09000 * 114.16961 * 87.62086 * 5 4 3 31 31 H 1.08999 * 113.47383 * 336.06156 * 6 3 2 32 32 H 1.08997 * 113.47538 * 106.46766 * 6 3 2 33 33 H 1.09000 * 109.50037 * 177.81390 * 7 2 1 34 34 H 1.08990 * 109.50774 * 57.69539 * 7 2 1 35 35 H 1.08999 * 109.46629 * 180.80487 * 8 7 2 36 36 H 1.09001 * 109.45253 * 60.83606 * 8 7 2 37 37 H 1.08997 * 109.46714 * 50.00190 * 10 9 8 38 38 H 1.08997 * 109.46925 * 289.99823 * 10 9 8 39 39 H 0.96702 * 114.00710 * 300.00645 * 13 11 10 40 40 H 0.96992 * 120.00686 * 179.97438 * 17 16 14 41 41 H 1.09007 * 109.46363 * 58.27767 * 22 9 8 42 42 H 1.09001 * 109.46242 * 178.24462 * 22 9 8 43 43 H 1.08999 * 109.49939 * 299.23974 * 23 22 9 44 44 H 1.08997 * 109.50176 * 179.12063 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0210 1.3844 0.0000 4 6 1.9341 1.9761 1.3481 5 6 3.3104 2.6087 1.0987 6 6 3.4888 1.4248 0.1378 7 6 2.0416 -0.7244 -1.2482 8 6 1.5766 -2.1819 -1.2128 9 7 2.0924 -2.8324 -0.0014 10 6 1.7822 -4.2683 -0.0022 11 6 2.5406 -4.9545 1.1357 12 1 2.2393 -4.5182 2.0881 13 8 3.9455 -4.7706 0.9507 14 6 2.2228 -6.4277 1.1346 15 1 1.5479 -6.8339 0.3958 16 6 2.7947 -7.2569 2.0760 17 7 3.6170 -6.7623 2.9753 18 14 2.4003 -9.0828 2.0750 19 1 3.3754 -9.7993 1.2140 20 1 2.4844 -9.6082 3.4614 21 1 1.0276 -9.2925 1.5486 22 6 1.5766 -2.1833 1.2105 23 6 2.0417 -0.7257 1.2475 24 1 -0.3633 -1.0275 -0.0199 25 1 -0.3633 0.4965 0.8998 26 1 -0.3633 0.5310 -0.8798 27 1 1.1322 2.7073 1.4506 28 1 1.9351 1.2357 2.1481 29 1 3.9750 2.5866 1.9623 30 1 3.2723 3.5807 0.6069 31 1 3.9047 0.5373 0.6148 32 1 4.0045 1.6877 -0.7857 33 1 3.1309 -0.6905 -1.2678 34 1 1.6458 -0.2376 -2.1394 35 1 1.9512 -2.7042 -2.0931 36 1 0.4871 -2.2153 -1.2071 37 1 2.0835 -4.7046 -0.9546 38 1 0.7105 -4.4086 0.1389 39 1 4.2842 -5.1352 0.1215 40 1 4.0190 -7.3456 3.6378 41 1 0.4871 -2.2167 1.2048 42 1 1.9513 -2.7065 2.0902 43 1 3.1310 -0.6918 1.2671 44 1 1.6457 -0.2399 2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931700598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:23 Heat of formation + Delta-G solvation = -21.324935 kcal Electronic energy + Delta-G solvation = -22032.211557 eV Core-core repulsion = 18984.990342 eV Total energy + Delta-G solvation = -3047.221215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.10427 -39.43058 -37.41511 -34.72879 -34.19522 -31.98494 -30.67394 -28.71527 -28.38274 -26.71190 -26.01197 -24.44306 -23.30476 -21.85192 -21.03219 -19.12551 -18.81178 -17.77787 -16.70889 -16.67114 -16.44110 -16.09404 -15.91604 -15.67169 -15.36717 -15.10091 -14.91338 -14.50636 -14.07015 -13.50541 -13.31468 -13.12328 -12.91430 -12.89783 -12.86354 -12.71374 -12.61015 -12.44292 -12.05113 -11.98862 -11.90208 -11.66601 -11.57497 -11.42772 -11.07004 -10.93511 -10.69882 -10.08505 -9.61927 -9.05610 -8.13637 -6.39874 1.40162 1.40259 1.51239 2.37847 2.98080 3.09889 3.13119 3.57827 3.70631 3.76620 3.92656 4.04305 4.14641 4.28058 4.29146 4.31324 4.37863 4.46399 4.48147 4.58386 4.69259 4.70361 4.74017 4.79082 4.86740 4.94569 4.97204 4.98394 5.00667 5.04521 5.06723 5.12864 5.22794 5.25500 5.41710 5.54456 5.60681 5.75536 6.01993 6.15727 6.23566 6.34092 6.73950 7.34627 7.62312 8.90842 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035615 B = 0.004308 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.000446 B = 6497.805724 C = 6762.681651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.079 3.921 3 N -0.469 5.469 4 C -0.018 4.018 5 C -0.136 4.136 6 C -0.013 4.013 7 C -0.090 4.090 8 C 0.055 3.945 9 N -0.535 5.535 10 C 0.049 3.951 11 C 0.239 3.761 12 H 0.019 0.981 13 O -0.570 6.570 14 C -0.590 4.590 15 H 0.058 0.942 16 C 0.027 3.973 17 N -0.900 5.900 18 Si 0.959 3.041 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.265 1.265 22 C 0.064 3.936 23 C -0.135 4.135 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.022 0.978 39 H 0.352 0.648 40 H 0.261 0.739 41 H 0.032 0.968 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.201 16.534 -6.147 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.011 4.011 3 N -0.190 5.190 4 C -0.146 4.146 5 C -0.174 4.174 6 C -0.142 4.142 7 C -0.129 4.129 8 C -0.073 4.073 9 N -0.260 5.260 10 C -0.079 4.079 11 C 0.181 3.819 12 H 0.037 0.963 13 O -0.373 6.373 14 C -0.628 4.628 15 H 0.076 0.924 16 C -0.175 4.175 17 N -0.537 5.537 18 Si 0.784 3.216 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.189 1.189 22 C -0.065 4.065 23 C -0.173 4.173 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.040 0.960 39 H 0.196 0.804 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.018 17.159 -6.007 18.619 hybrid contribution -0.587 -2.184 0.471 2.310 sum -4.605 14.975 -5.536 16.617 Atomic orbital electron populations 1.21776 0.93178 1.01415 1.02454 1.21450 0.96123 0.89143 0.94365 1.69196 1.08912 1.14677 1.26248 1.24035 0.99232 0.99256 0.92077 1.23066 0.96491 0.98259 0.99535 1.23886 0.90937 0.98748 1.00641 1.21469 1.00841 0.93220 0.97328 1.22171 0.97284 0.95120 0.92735 1.61869 1.59828 1.02156 1.02158 1.22667 0.97237 0.87494 1.00529 1.19154 0.78918 0.91958 0.91842 0.96312 1.86497 1.25623 1.82009 1.43157 1.22072 1.29583 0.95170 1.16013 0.92353 1.25880 0.93962 1.03355 0.94314 1.70220 1.29613 1.36877 1.16963 0.85567 0.78959 0.79682 0.77405 1.19728 1.20876 1.18949 1.21958 0.96541 0.94877 0.93118 1.22294 1.01487 0.94259 0.99267 0.92823 0.92411 0.91467 0.89401 0.90348 0.89923 0.88296 0.91396 0.89867 0.92126 0.90027 0.90620 0.94683 0.91221 0.95970 0.80421 0.93001 0.95007 0.93358 0.91571 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.04 71.98 0.58 -2.37 16 2 C 0.08 1.92 0.47 3.61 0.00 1.92 16 3 N -0.47 -10.34 6.14 -877.56 -5.38 -15.72 16 4 C -0.02 -0.33 7.05 83.58 0.59 0.26 16 5 C -0.14 -2.26 8.47 30.94 0.26 -2.00 16 6 C -0.01 -0.28 6.41 83.58 0.54 0.26 16 7 C -0.09 -2.30 4.91 30.64 0.15 -2.15 16 8 C 0.05 1.59 5.21 86.32 0.45 2.04 16 9 N -0.54 -19.38 4.52 -896.35 -4.05 -23.44 16 10 C 0.05 2.03 4.56 86.30 0.39 2.43 16 11 C 0.24 12.42 2.70 29.85 0.08 12.50 16 12 H 0.02 1.11 6.43 -2.39 -0.02 1.10 16 13 O -0.57 -30.53 12.59 -148.98 -1.88 -32.41 16 14 C -0.59 -32.73 8.76 25.60 0.22 -32.50 16 15 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 16 C 0.03 1.54 5.40 84.65 0.46 2.00 16 17 N -0.90 -54.34 12.84 21.45 0.28 -54.06 16 18 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 22 C 0.06 2.22 5.04 86.33 0.44 2.65 16 23 C -0.13 -3.77 3.84 30.65 0.12 -3.65 16 24 H 0.05 1.31 4.92 -2.39 -0.01 1.29 16 25 H 0.06 1.22 7.85 -2.39 -0.02 1.20 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 1.56 4.92 -2.39 -0.01 1.55 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.64 5.45 -2.39 -0.01 1.62 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.66 7.31 -2.39 -0.02 1.64 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 2.11 8.02 -2.39 -0.02 2.09 16 36 H 0.04 0.98 6.49 -2.39 -0.02 0.96 16 37 H 0.07 2.78 7.99 -2.39 -0.02 2.77 16 38 H 0.02 0.92 8.12 -2.39 -0.02 0.90 16 39 H 0.35 16.90 9.04 -74.06 -0.67 16.23 16 40 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 41 H 0.03 1.06 6.54 -2.38 -0.02 1.05 16 42 H 0.05 2.02 6.21 -2.39 -0.01 2.00 16 43 H 0.07 2.03 5.75 -2.39 -0.01 2.02 16 44 H 0.08 2.06 5.84 -2.39 -0.01 2.05 16 Total: -1.00 -63.63 323.59 -4.42 -68.04 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.32 Total: 30.71 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 4.28 Total: -18.62 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -9.16 Total: -93.22 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -1.88 Total: -32.41 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -63.63 -4.42 -68.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931700598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.717 kcal (2) G-P(sol) polarization free energy of solvation -63.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds