Wall clock time and date at job start Mon Mar 30 2020 01:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00130 * 2 1 4 4 H 1.48501 * 109.47102 * 270.00240 * 3 2 1 5 5 H 1.48504 * 109.47063 * 29.99763 * 3 2 1 6 6 H 1.48498 * 109.47270 * 149.99575 * 3 2 1 7 7 C 1.37876 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99778 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00247 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47250 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47132 * 179.97438 * 10 9 7 12 12 N 1.50497 * 109.47231 * 179.97438 * 11 10 9 13 13 C 1.50124 * 104.34516 * 190.00146 * 12 11 10 14 14 C 1.52739 * 108.10948 * 110.22972 * 13 12 11 15 15 C 1.52960 * 109.76321 * 119.90200 * 14 13 12 16 16 C 1.52960 * 109.62014 * 234.10561 * 15 14 13 17 17 C 1.53007 * 109.57582 * 98.09783 * 16 15 14 18 18 N 1.47644 * 108.90279 * 298.25318 * 17 16 15 19 19 C 1.36129 * 116.96571 * 112.03080 * 18 17 16 20 20 O 1.21243 * 120.87637 * 3.45202 * 19 18 17 21 21 C 1.50786 * 118.87080 * 183.33749 * 19 18 17 22 22 C 1.50056 * 104.31775 * 80.11892 * 12 11 10 23 23 H 0.96998 * 120.00188 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47481 * 59.99933 * 9 7 2 25 25 H 1.09005 * 109.46503 * 299.99793 * 9 7 2 26 26 H 1.08993 * 109.47285 * 59.99382 * 10 9 7 27 27 H 1.08999 * 109.46496 * 299.99416 * 10 9 7 28 28 H 1.09005 * 109.46991 * 59.99648 * 11 10 9 29 29 H 1.08999 * 109.47324 * 299.99725 * 11 10 9 30 30 H 1.08474 * 107.98404 * 350.83338 * 13 12 11 31 31 H 1.08235 * 108.45700 * 230.12297 * 13 12 11 32 32 H 1.09092 * 109.53570 * 239.93934 * 14 13 12 33 33 H 1.09043 * 109.55138 * 359.68947 * 14 13 12 34 34 H 1.08939 * 109.65637 * 354.29334 * 15 14 13 35 35 H 1.09067 * 109.41085 * 114.14466 * 15 14 13 36 36 H 1.08942 * 109.59844 * 337.95356 * 16 15 14 37 37 H 1.09046 * 109.42357 * 218.02364 * 16 15 14 38 38 H 1.09107 * 109.39592 * 178.64896 * 17 16 15 39 39 H 1.08854 * 109.60456 * 58.71281 * 17 16 15 40 40 H 0.97149 * 121.53427 * 292.44828 * 18 17 16 41 41 H 1.09056 * 109.31077 * 334.01330 * 21 19 18 42 42 H 1.09076 * 109.28787 * 214.48651 * 21 19 18 43 43 H 1.08574 * 107.85655 * 334.02795 * 22 12 11 44 44 H 1.08234 * 108.56641 * 94.41141 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0009 12 7 6.0532 -4.0554 0.0015 13 6 7.5276 -3.9285 0.2539 14 6 7.8176 -4.4661 1.6539 15 6 8.7922 -5.6416 1.5649 16 6 8.1974 -6.8570 2.2782 17 6 7.5505 -7.7885 1.2511 18 7 6.4545 -7.0668 0.5744 19 6 6.6303 -6.7720 -0.7429 20 8 7.6178 -7.1471 -1.3380 21 6 5.5720 -5.9697 -1.4569 22 6 5.9417 -4.4890 -1.4308 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6800 0.8910 25 1 3.8751 -0.6804 -0.8889 26 1 3.6585 -3.1502 -0.8891 27 1 3.6579 -3.1504 0.8908 28 1 5.9149 -2.1227 0.8910 29 1 5.9149 -2.1227 -0.8890 30 1 7.7888 -2.8775 0.1919 31 1 8.0543 -4.5090 -0.4924 32 1 8.2590 -3.6765 2.2637 33 1 6.8881 -4.7991 2.1167 34 1 8.9749 -5.8879 0.5196 35 1 9.7347 -5.3679 2.0406 36 1 7.4455 -6.5284 2.9948 37 1 8.9888 -7.3921 2.8041 38 1 7.1485 -8.6658 1.7601 39 1 8.2960 -8.1031 0.5229 40 1 5.6471 -6.8085 1.0490 41 1 4.6120 -6.1163 -0.9606 42 1 5.4981 -6.3099 -2.4906 43 1 5.1593 -3.8983 -1.8974 44 1 6.8948 -4.3236 -1.9161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934161049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:00 Heat of formation + Delta-G solvation = -44.654025 kcal Electronic energy + Delta-G solvation = -21558.045787 eV Core-core repulsion = 18509.812947 eV Total energy + Delta-G solvation = -3048.232840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01925 -37.74685 -36.30559 -33.98224 -33.59852 -31.91766 -30.55861 -29.77264 -26.91747 -24.64220 -23.75118 -22.41633 -21.06686 -20.86497 -20.15328 -19.88188 -17.06883 -16.74642 -16.33797 -15.92873 -15.21594 -14.82720 -14.54056 -14.22514 -14.19138 -13.79115 -13.41583 -13.22124 -12.95414 -12.80819 -12.48278 -12.27095 -11.88435 -11.71529 -11.57235 -11.27028 -11.15978 -11.01363 -10.98641 -10.77962 -10.54741 -10.46794 -9.95658 -9.73875 -9.67503 -9.51037 -9.17453 -8.97693 -8.82018 -8.54480 -6.04907 -4.02703 2.67507 3.29260 3.32011 3.37017 3.40213 4.08011 4.44308 4.60177 4.74637 4.84039 4.88587 5.07226 5.15811 5.18489 5.26522 5.29556 5.33637 5.47241 5.54357 5.59021 5.65257 5.71896 5.74568 5.80881 5.89371 5.91250 5.95323 6.05593 6.11860 6.17059 6.30031 6.41435 6.44965 6.52597 6.79211 6.90623 6.94708 7.32741 7.43299 7.58696 7.79304 8.26795 8.53918 9.00552 9.57917 11.08668 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.004042 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.839027 B = 6926.375231 C = 7241.609389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.095 4.095 11 C 0.013 3.987 12 N -0.465 5.465 13 C 0.007 3.993 14 C -0.110 4.110 15 C -0.120 4.120 16 C -0.135 4.135 17 C 0.104 3.896 18 N -0.721 5.721 19 C 0.530 3.470 20 O -0.557 6.557 21 C -0.132 4.132 22 C 0.016 3.984 23 H 0.263 0.737 24 H 0.014 0.986 25 H 0.008 0.992 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.412 0.588 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.592 -13.016 2.513 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.132 4.132 11 C -0.114 4.114 12 N -0.188 5.188 13 C -0.122 4.122 14 C -0.148 4.148 15 C -0.158 4.158 16 C -0.173 4.173 17 C -0.021 4.021 18 N -0.375 5.375 19 C 0.318 3.682 20 O -0.435 6.435 21 C -0.172 4.172 22 C -0.113 4.113 23 H 0.072 0.928 24 H 0.033 0.967 25 H 0.026 0.974 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.248 0.752 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.790 -13.581 2.568 21.747 hybrid contribution 0.366 1.757 -0.316 1.823 sum 17.156 -11.823 2.252 20.957 Atomic orbital electron populations 1.69914 1.06299 1.26842 1.51303 1.25036 0.94713 0.99145 0.94639 0.86782 0.80343 0.83715 0.78436 1.20375 1.21417 1.19095 1.21135 0.89497 0.94410 1.50570 0.91039 1.19561 0.97192 0.92435 0.96018 1.21410 0.90854 0.99403 1.01573 1.23603 0.98602 0.88646 1.00597 1.70221 1.10945 1.18978 1.18700 1.23568 0.90549 1.00152 0.97888 1.21663 0.99830 0.97117 0.96156 1.21756 0.97965 0.94865 1.01223 1.22104 1.00165 0.97037 0.98023 1.21730 0.90861 0.93906 0.95569 1.46500 1.21289 1.59090 1.10627 1.20918 0.87092 0.78096 0.82071 1.90650 1.32057 1.54327 1.66510 1.21659 0.98712 0.95342 1.01525 1.23155 1.01928 0.94320 0.91945 0.92772 0.96749 0.97380 0.92842 0.92066 0.91332 0.93995 0.92779 0.91340 0.92770 0.90020 0.91385 0.92719 0.91349 0.91578 0.91767 0.89122 0.75169 0.89087 0.88835 0.89288 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.75 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.09 -1.76 5.26 -26.73 -0.14 -1.90 16 11 C 0.01 0.20 3.92 -1.80 -0.01 0.20 16 12 N -0.47 -5.88 5.01 -227.30 -1.14 -7.02 16 13 C 0.01 0.08 4.75 -2.15 -0.01 0.07 16 14 C -0.11 -1.16 5.61 -26.89 -0.15 -1.31 16 15 C -0.12 -1.17 5.51 -26.77 -0.15 -1.31 16 16 C -0.13 -1.10 5.83 -26.75 -0.16 -1.26 16 17 C 0.10 0.92 6.25 -3.41 -0.02 0.90 16 18 N -0.72 -7.11 4.81 -59.14 -0.28 -7.40 16 19 C 0.53 6.48 5.12 -10.33 -0.05 6.42 16 20 O -0.56 -8.62 15.94 5.59 0.09 -8.54 16 21 C -0.13 -1.47 6.03 -28.03 -0.17 -1.64 16 22 C 0.02 0.19 4.96 -2.24 -0.01 0.18 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 25 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 26 H 0.05 0.99 6.88 -51.93 -0.36 0.64 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 29 H 0.04 0.62 7.70 -51.93 -0.40 0.22 16 30 H 0.05 0.64 7.05 -52.22 -0.37 0.27 16 31 H 0.07 0.86 5.09 -52.36 -0.27 0.59 16 32 H 0.05 0.56 8.15 -51.88 -0.42 0.13 16 33 H 0.08 0.91 6.83 -51.90 -0.35 0.56 16 34 H 0.07 0.80 5.83 -51.96 -0.30 0.49 16 35 H 0.05 0.49 8.15 -51.89 -0.42 0.06 16 36 H 0.07 0.55 7.28 -51.96 -0.38 0.17 16 37 H 0.07 0.46 8.15 -51.90 -0.42 0.04 16 38 H 0.06 0.46 8.15 -51.87 -0.42 0.04 16 39 H 0.09 0.97 6.74 -52.01 -0.35 0.62 16 40 H 0.41 3.66 8.85 -40.76 -0.36 3.29 16 41 H 0.09 0.94 8.11 -51.90 -0.42 0.52 16 42 H 0.09 0.98 8.15 -51.89 -0.42 0.56 16 43 H 0.09 1.14 6.03 -52.17 -0.31 0.83 16 44 H 0.06 0.72 6.72 -52.36 -0.35 0.37 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -31.42 331.26 -9.17 -40.58 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.52 Total: 0.68 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.41 Total: -13.22 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.65 Total: -41.46 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.42 -9.17 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934161049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.069 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds