Wall clock time and date at job start Mon Mar 30 2020 01:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00130 * 2 1 4 4 H 1.48501 * 109.47102 * 270.00240 * 3 2 1 5 5 H 1.48504 * 109.47063 * 29.99763 * 3 2 1 6 6 H 1.48498 * 109.47270 * 149.99575 * 3 2 1 7 7 C 1.37876 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99778 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00247 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47250 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47132 * 179.97438 * 10 9 7 12 12 N 1.50497 * 109.47231 * 179.97438 * 11 10 9 13 13 C 1.50124 * 104.34516 * 190.00146 * 12 11 10 14 14 C 1.52739 * 108.10948 * 110.22972 * 13 12 11 15 15 C 1.52960 * 109.76321 * 119.90200 * 14 13 12 16 16 C 1.52960 * 109.62014 * 234.10561 * 15 14 13 17 17 C 1.53007 * 109.57582 * 98.09783 * 16 15 14 18 18 N 1.47644 * 108.90279 * 298.25318 * 17 16 15 19 19 C 1.36129 * 116.96571 * 112.03080 * 18 17 16 20 20 O 1.21243 * 120.87637 * 3.45202 * 19 18 17 21 21 C 1.50786 * 118.87080 * 183.33749 * 19 18 17 22 22 C 1.50056 * 104.31775 * 80.11892 * 12 11 10 23 23 H 0.96998 * 120.00188 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47481 * 59.99933 * 9 7 2 25 25 H 1.09005 * 109.46503 * 299.99793 * 9 7 2 26 26 H 1.08993 * 109.47285 * 59.99382 * 10 9 7 27 27 H 1.08999 * 109.46496 * 299.99416 * 10 9 7 28 28 H 1.09005 * 109.46991 * 59.99648 * 11 10 9 29 29 H 1.08999 * 109.47324 * 299.99725 * 11 10 9 30 30 H 1.08474 * 107.98404 * 350.83338 * 13 12 11 31 31 H 1.08235 * 108.45700 * 230.12297 * 13 12 11 32 32 H 1.09092 * 109.53570 * 239.93934 * 14 13 12 33 33 H 1.09043 * 109.55138 * 359.68947 * 14 13 12 34 34 H 1.08939 * 109.65637 * 354.29334 * 15 14 13 35 35 H 1.09067 * 109.41085 * 114.14466 * 15 14 13 36 36 H 1.08942 * 109.59844 * 337.95356 * 16 15 14 37 37 H 1.09046 * 109.42357 * 218.02364 * 16 15 14 38 38 H 1.09107 * 109.39592 * 178.64896 * 17 16 15 39 39 H 1.08854 * 109.60456 * 58.71281 * 17 16 15 40 40 H 0.97149 * 121.53427 * 292.44828 * 18 17 16 41 41 H 1.09056 * 109.31077 * 334.01330 * 21 19 18 42 42 H 1.09076 * 109.28787 * 214.48651 * 21 19 18 43 43 H 1.08574 * 107.85655 * 334.02795 * 22 12 11 44 44 H 1.08234 * 108.56641 * 94.41141 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0009 12 7 6.0532 -4.0554 0.0015 13 6 7.5276 -3.9285 0.2539 14 6 7.8176 -4.4661 1.6539 15 6 8.7922 -5.6416 1.5649 16 6 8.1974 -6.8570 2.2782 17 6 7.5505 -7.7885 1.2511 18 7 6.4545 -7.0668 0.5744 19 6 6.6303 -6.7720 -0.7429 20 8 7.6178 -7.1471 -1.3380 21 6 5.5720 -5.9697 -1.4569 22 6 5.9417 -4.4890 -1.4308 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6800 0.8910 25 1 3.8751 -0.6804 -0.8889 26 1 3.6585 -3.1502 -0.8891 27 1 3.6579 -3.1504 0.8908 28 1 5.9149 -2.1227 0.8910 29 1 5.9149 -2.1227 -0.8890 30 1 7.7888 -2.8775 0.1919 31 1 8.0543 -4.5090 -0.4924 32 1 8.2590 -3.6765 2.2637 33 1 6.8881 -4.7991 2.1167 34 1 8.9749 -5.8879 0.5196 35 1 9.7347 -5.3679 2.0406 36 1 7.4455 -6.5284 2.9948 37 1 8.9888 -7.3921 2.8041 38 1 7.1485 -8.6658 1.7601 39 1 8.2960 -8.1031 0.5229 40 1 5.6471 -6.8085 1.0490 41 1 4.6120 -6.1163 -0.9606 42 1 5.4981 -6.3099 -2.4906 43 1 5.1593 -3.8983 -1.8974 44 1 6.8948 -4.3236 -1.9161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934161049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:00 Heat of formation + Delta-G solvation = -66.530271 kcal Electronic energy + Delta-G solvation = -21558.994412 eV Core-core repulsion = 18509.812947 eV Total energy + Delta-G solvation = -3049.181465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.96870 -38.83343 -37.15959 -35.70520 -34.59285 -33.73359 -31.61144 -30.78833 -28.49760 -25.67945 -24.79796 -23.82204 -22.03383 -21.75912 -21.64559 -20.89788 -18.87180 -17.98298 -17.18857 -16.96124 -16.34328 -16.28720 -15.72215 -15.48577 -15.28044 -14.92437 -14.76775 -14.33293 -14.17475 -13.92093 -13.70961 -13.52277 -13.29934 -12.92565 -12.66664 -12.59674 -12.44396 -12.08796 -12.06023 -11.79571 -11.76859 -11.65123 -11.46390 -11.35475 -11.23082 -11.03380 -10.73997 -10.65460 -9.87144 -9.81933 -8.26985 -6.30485 1.36953 1.38813 1.50512 1.71956 2.37859 2.49334 3.03430 3.08822 3.76629 3.86045 3.99214 4.10954 4.15846 4.19751 4.25727 4.32852 4.39942 4.50940 4.60540 4.68218 4.71579 4.73494 4.81024 4.85410 4.90530 4.94357 4.96806 5.06220 5.13029 5.15994 5.20119 5.27432 5.32327 5.49446 5.54530 5.62917 5.64926 5.70312 5.78324 5.86572 6.32697 6.73542 6.78308 7.34208 7.37421 8.89948 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.004042 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.839027 B = 6926.375231 C = 7241.609389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.246 1.246 7 C -0.529 4.529 8 H 0.032 0.968 9 C -0.012 4.012 10 C -0.083 4.083 11 C 0.024 3.976 12 N -0.461 5.461 13 C 0.011 3.989 14 C -0.106 4.106 15 C -0.117 4.117 16 C -0.129 4.129 17 C 0.102 3.898 18 N -0.711 5.711 19 C 0.529 3.471 20 O -0.593 6.593 21 C -0.129 4.129 22 C 0.018 3.982 23 H 0.265 0.735 24 H 0.018 0.982 25 H 0.016 0.984 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.418 0.582 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.448 -12.650 3.350 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.194 4.194 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.169 1.169 7 C -0.567 4.567 8 H 0.050 0.950 9 C -0.050 4.050 10 C -0.121 4.121 11 C -0.104 4.104 12 N -0.184 5.184 13 C -0.117 4.117 14 C -0.144 4.144 15 C -0.154 4.154 16 C -0.167 4.167 17 C -0.021 4.021 18 N -0.364 5.364 19 C 0.318 3.682 20 O -0.474 6.474 21 C -0.170 4.170 22 C -0.111 4.111 23 H 0.074 0.926 24 H 0.036 0.964 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.256 0.744 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.650 -13.235 3.431 23.125 hybrid contribution -0.267 1.543 -0.566 1.665 sum 18.383 -11.692 2.865 21.974 Atomic orbital electron populations 1.70073 1.08343 1.28059 1.52985 1.26026 0.95574 1.03526 0.94284 0.85658 0.79538 0.78318 0.79108 1.19290 1.21195 1.16908 1.21517 0.92279 0.92984 1.49885 0.94995 1.19518 0.93749 0.95461 0.96280 1.21205 0.93541 0.96390 1.01000 1.23393 0.95692 0.90195 1.01097 1.70213 1.11774 1.17272 1.19108 1.23553 0.89464 1.00239 0.98484 1.21639 0.99872 0.97598 0.95261 1.21703 0.98354 0.95211 1.00177 1.22066 1.00698 0.96302 0.97664 1.21813 0.90259 0.94799 0.95264 1.46489 1.21701 1.58268 1.09971 1.21030 0.86643 0.77896 0.82664 1.90636 1.33470 1.55930 1.67385 1.21648 0.98729 0.94536 1.02075 1.23133 1.01683 0.94815 0.91507 0.92610 0.96371 0.96596 0.93176 0.93007 0.90912 0.93408 0.92558 0.92128 0.92140 0.90396 0.93531 0.91778 0.90683 0.89920 0.89595 0.91044 0.74394 0.88240 0.88228 0.89886 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.80 13.96 21.45 0.30 -59.51 16 2 C 0.00 0.13 5.47 84.65 0.46 0.59 16 3 Si 0.95 43.88 27.47 68.60 1.88 45.77 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.25 -10.44 6.54 99.48 0.65 -9.79 16 7 C -0.53 -30.14 9.66 25.60 0.25 -29.89 16 8 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 9 C -0.01 -0.55 4.04 29.85 0.12 -0.42 16 10 C -0.08 -3.03 5.26 30.59 0.16 -2.87 16 11 C 0.02 0.69 3.92 85.60 0.34 1.02 16 12 N -0.46 -10.90 5.01 -873.06 -4.37 -15.27 16 13 C 0.01 0.24 4.75 85.58 0.41 0.65 16 14 C -0.11 -2.01 5.61 30.49 0.17 -1.84 16 15 C -0.12 -2.05 5.51 30.57 0.17 -1.88 16 16 C -0.13 -1.81 5.83 30.58 0.18 -1.63 16 17 C 0.10 1.65 6.25 86.16 0.54 2.19 16 18 N -0.71 -13.02 4.81 -458.65 -2.21 -15.23 16 19 C 0.53 12.50 5.12 87.47 0.45 12.95 16 20 O -0.59 -18.27 15.94 -2.92 -0.05 -18.31 16 21 C -0.13 -2.76 6.03 29.75 0.18 -2.58 16 22 C 0.02 0.41 4.96 85.56 0.42 0.84 16 23 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 24 H 0.02 0.80 7.20 -2.39 -0.02 0.79 16 25 H 0.02 0.69 7.57 -2.38 -0.02 0.67 16 26 H 0.05 1.83 6.88 -2.39 -0.02 1.82 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 2.01 7.84 -2.38 -0.02 1.99 16 29 H 0.05 1.30 7.70 -2.39 -0.02 1.28 16 30 H 0.06 1.21 7.05 -2.66 -0.02 1.19 16 31 H 0.06 1.45 5.09 -2.79 -0.01 1.44 16 32 H 0.06 1.09 8.15 -2.34 -0.02 1.07 16 33 H 0.08 1.56 6.83 -2.36 -0.02 1.54 16 34 H 0.05 1.04 5.83 -2.42 -0.01 1.03 16 35 H 0.06 1.00 8.15 -2.35 -0.02 0.98 16 36 H 0.07 0.99 7.28 -2.42 -0.02 0.97 16 37 H 0.08 0.92 8.15 -2.36 -0.02 0.90 16 38 H 0.09 1.03 8.15 -2.33 -0.02 1.01 16 39 H 0.07 1.48 6.74 -2.46 -0.02 1.47 16 40 H 0.42 6.66 8.85 -92.60 -0.82 5.84 16 41 H 0.10 1.94 8.11 -2.36 -0.02 1.92 16 42 H 0.10 2.01 8.15 -2.35 -0.02 1.99 16 43 H 0.08 2.04 6.03 -2.61 -0.02 2.03 16 44 H 0.06 1.37 6.72 -2.79 -0.02 1.35 16 Total: -1.00 -68.25 331.26 -0.50 -68.75 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.10 Total: 16.67 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 3.84 Total: -22.87 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -6.28 Total: -90.01 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.05 Total: -18.31 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.77 kcal Total: -68.25 -0.50 -68.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934161049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.224 kcal (2) G-P(sol) polarization free energy of solvation -68.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds