Wall clock time and date at job start Mon Mar 30 2020 01:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00136 * 2 1 4 4 H 1.48505 * 109.47246 * 240.00043 * 3 2 1 5 5 H 1.48500 * 109.47408 * 120.00013 * 3 2 1 6 6 H 1.48504 * 109.47158 * 0.02562 * 3 2 1 7 7 C 1.37877 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46860 * 179.97438 * 9 7 2 11 11 N 1.46910 * 109.46640 * 175.74702 * 10 9 7 12 12 C 1.49217 * 111.00206 * 302.33509 * 11 10 9 13 13 C 1.55052 * 102.70628 * 198.46407 * 12 11 10 14 14 C 1.55712 * 103.11660 * 36.58587 * 13 12 11 15 15 H 1.09003 * 109.61613 * 100.06124 * 14 13 12 16 16 C 1.47441 * 110.99613 * 187.43172 * 11 10 9 17 17 H 1.08998 * 105.04693 * 38.98447 * 16 11 10 18 18 C 1.49118 * 113.50887 * 285.67239 * 16 11 10 19 19 C 1.52679 * 112.39623 * 262.30885 * 18 16 11 20 20 C 1.53475 * 107.48195 * 306.98452 * 19 18 16 21 21 N 1.45349 * 107.41074 * 219.11242 * 14 13 12 22 22 C 1.46909 * 110.99762 * 279.86662 * 21 14 13 23 23 C 1.52994 * 109.46901 * 77.19008 * 22 21 14 24 24 O 1.42894 * 109.47452 * 63.15190 * 23 22 21 25 25 H 0.97003 * 120.00329 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47274 * 299.99570 * 9 7 2 27 27 H 1.09001 * 109.47674 * 59.99389 * 9 7 2 28 28 H 1.08998 * 109.47113 * 295.74681 * 10 9 7 29 29 H 1.09001 * 109.47006 * 55.75445 * 10 9 7 30 30 H 1.09001 * 110.76379 * 316.76933 * 12 11 10 31 31 H 1.08999 * 110.75978 * 79.97534 * 12 11 10 32 32 H 1.09005 * 110.68351 * 154.99271 * 13 12 11 33 33 H 1.09001 * 110.69095 * 278.17677 * 13 12 11 34 34 H 1.09001 * 109.17489 * 141.44260 * 18 16 11 35 35 H 1.08995 * 108.72121 * 22.87007 * 18 16 11 36 36 H 1.09004 * 109.85669 * 187.48733 * 19 18 16 37 37 H 1.08996 * 109.85400 * 66.47485 * 19 18 16 38 38 H 1.09003 * 109.74258 * 307.88225 * 20 19 18 39 39 H 1.09004 * 109.73877 * 187.17851 * 20 19 18 40 40 H 1.09004 * 109.46734 * 197.19103 * 22 21 14 41 41 H 1.09003 * 109.46671 * 317.18759 * 22 21 14 42 42 H 1.09004 * 109.46708 * 183.15805 * 23 22 21 43 43 H 1.09000 * 109.46974 * 303.14603 * 23 22 21 44 44 H 0.96700 * 114.00190 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 3.1029 1.6964 1.2125 6 1 1.2842 2.7464 0.0006 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5135 -4.9318 0.1033 12 6 0.6688 -4.9643 1.3328 13 6 0.3867 -6.4783 1.5130 14 6 1.7224 -7.1422 1.0658 15 1 2.3094 -7.4110 1.9441 16 6 2.4415 -6.0632 0.2840 17 1 3.2167 -5.6893 0.9529 18 6 3.1759 -6.4347 -0.9595 19 6 2.5289 -7.6100 -1.6882 20 6 2.3720 -8.7513 -0.6741 21 7 1.3830 -8.3422 0.3192 22 6 1.0571 -9.4515 1.2256 23 6 -0.3549 -9.2578 1.7817 24 8 -1.2995 -9.3061 0.7105 25 1 -0.4851 -0.8400 0.0004 26 1 0.6240 -2.5567 0.8903 27 1 0.6245 -2.5571 -0.8896 28 1 2.8206 -3.6481 -0.9251 29 1 2.9209 -3.5624 0.8501 30 1 1.2162 -4.5687 2.1884 31 1 -0.2579 -4.4112 1.1797 32 1 0.1727 -6.7085 2.5567 33 1 -0.4350 -6.7960 0.8712 34 1 4.2015 -6.7008 -0.7036 35 1 3.1925 -5.5729 -1.6266 36 1 3.1665 -7.9314 -2.5117 37 1 1.5508 -7.3162 -2.0691 38 1 3.3272 -8.9433 -0.1853 39 1 2.0310 -9.6524 -1.1839 40 1 1.1065 -10.3935 0.6792 41 1 1.7722 -9.4706 2.0481 42 1 -0.5756 -10.0503 2.4968 43 1 -0.4196 -8.2905 2.2799 44 1 -2.2179 -9.1906 0.9905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934256866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:12 Heat of formation + Delta-G solvation = -38.043136 kcal Electronic energy + Delta-G solvation = -21837.810996 eV Core-core repulsion = 18789.864826 eV Total energy + Delta-G solvation = -3047.946170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31079 -37.35981 -36.15693 -33.80329 -33.62344 -31.31336 -29.29130 -28.43773 -27.84584 -24.02843 -23.89580 -22.32509 -21.73659 -21.56519 -20.04403 -18.44034 -17.46723 -16.68382 -16.42492 -15.54425 -15.10348 -14.65182 -14.39131 -14.27994 -14.11054 -13.69328 -13.46269 -13.29425 -12.93995 -12.78710 -12.33857 -12.08326 -11.82768 -11.42839 -11.33635 -11.15299 -11.05499 -10.80948 -10.73257 -10.60014 -10.40075 -10.27229 -10.10727 -9.91673 -9.78013 -9.62458 -8.55265 -8.28595 -8.17444 -7.82312 -6.32959 -4.01566 3.45247 3.47540 3.66249 3.76230 4.20655 4.30603 4.58699 4.63785 4.79618 4.98061 5.01773 5.12037 5.15314 5.27434 5.33742 5.37919 5.44874 5.48051 5.52339 5.59695 5.70085 5.75240 5.78196 5.84898 5.97120 6.02404 6.11546 6.17819 6.26921 6.29203 6.44836 6.47202 6.53660 6.84157 7.13226 7.28281 7.33266 7.40618 7.59658 7.64001 7.74338 8.27294 8.49524 8.91997 9.70655 11.08062 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030220 B = 0.004279 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.318123 B = 6542.498831 C = 7111.212373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.603 4.603 8 H 0.046 0.954 9 C 0.015 3.985 10 C 0.061 3.939 11 N -0.502 5.502 12 C 0.035 3.965 13 C -0.116 4.116 14 C 0.103 3.897 15 H 0.040 0.960 16 C 0.077 3.923 17 H 0.019 0.981 18 C -0.105 4.105 19 C -0.111 4.111 20 C 0.068 3.932 21 N -0.532 5.532 22 C 0.061 3.939 23 C 0.069 3.931 24 O -0.556 6.556 25 H 0.269 0.731 26 H 0.009 0.991 27 H 0.015 0.985 28 H 0.063 0.937 29 H 0.021 0.979 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.025 0.975 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.039 0.961 43 H 0.059 0.941 44 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.421 -20.378 3.544 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.188 4.188 3 Si 0.897 3.103 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.642 4.642 8 H 0.065 0.935 9 C -0.023 4.023 10 C -0.066 4.066 11 N -0.227 5.227 12 C -0.093 4.093 13 C -0.155 4.155 14 C -0.006 4.006 15 H 0.057 0.943 16 C -0.032 4.032 17 H 0.037 0.963 18 C -0.143 4.143 19 C -0.149 4.149 20 C -0.059 4.059 21 N -0.257 5.257 22 C -0.067 4.067 23 C -0.009 4.009 24 O -0.360 6.360 25 H 0.080 0.920 26 H 0.027 0.973 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.122 -18.731 2.455 19.010 hybrid contribution 1.114 -1.607 1.671 2.572 sum 3.237 -20.338 4.126 21.003 Atomic orbital electron populations 1.70767 1.06848 1.30678 1.46526 1.25815 0.96554 1.02597 0.93816 0.83551 0.74885 0.75414 0.76444 1.21445 1.21574 1.20739 1.22008 0.94169 0.92088 1.55953 0.93545 1.19224 0.94580 0.91891 0.96572 1.22382 0.96607 0.88383 0.99262 1.65093 1.19096 1.02524 1.35980 1.23286 0.98849 0.95572 0.91573 1.23143 0.98003 0.94581 0.99749 1.21633 0.95941 0.89486 0.93552 0.94266 1.20799 0.93768 0.92485 0.96183 0.96256 1.20638 0.97351 0.99539 0.96737 1.21564 1.02031 0.94464 0.96815 1.21947 0.92553 0.98190 0.93245 1.59956 1.45352 1.03448 1.16947 1.22105 0.94690 0.94495 0.95364 1.22478 0.89339 1.00142 0.88973 1.86597 1.18701 1.96116 1.34620 0.92016 0.97259 0.96672 0.91896 0.96091 0.94187 0.89666 0.92157 0.88803 0.92694 0.90634 0.91763 0.90092 0.95662 0.90851 0.90525 0.93613 0.94326 0.92289 0.78272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.65 55.43 0.76 -27.70 16 2 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 3 Si 1.07 25.72 29.90 -169.99 -5.08 20.63 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.60 -17.61 9.11 -34.44 -0.31 -17.93 16 8 H 0.05 1.33 7.74 -52.49 -0.41 0.93 16 9 C 0.01 0.39 4.18 -27.88 -0.12 0.27 16 10 C 0.06 1.35 4.66 -3.82 -0.02 1.33 16 11 N -0.50 -9.62 5.24 -226.14 -1.18 -10.80 16 12 C 0.04 0.62 5.34 -1.45 -0.01 0.62 16 13 C -0.12 -1.65 4.64 -24.20 -0.11 -1.77 16 14 C 0.10 1.44 2.88 -67.91 -0.20 1.24 16 15 H 0.04 0.52 7.58 -51.93 -0.39 0.13 16 16 C 0.08 1.24 2.11 -70.13 -0.15 1.09 16 17 H 0.02 0.33 7.37 -51.93 -0.38 -0.06 16 18 C -0.10 -1.51 5.51 -28.80 -0.16 -1.67 16 19 C -0.11 -1.42 6.23 -26.65 -0.17 -1.59 16 20 C 0.07 0.80 5.47 -4.05 -0.02 0.78 16 21 N -0.53 -6.82 3.87 -227.49 -0.88 -7.70 16 22 C 0.06 0.64 5.45 -3.82 -0.02 0.62 16 23 C 0.07 0.67 6.57 37.15 0.24 0.91 16 24 O -0.56 -6.17 13.41 -35.23 -0.47 -6.64 16 25 H 0.27 8.41 7.22 -40.82 -0.29 8.12 16 26 H 0.01 0.25 6.48 -51.93 -0.34 -0.08 16 27 H 0.01 0.43 8.01 -51.93 -0.42 0.01 16 28 H 0.06 1.39 7.17 -51.93 -0.37 1.02 16 29 H 0.02 0.47 7.76 -51.93 -0.40 0.07 16 30 H 0.04 0.72 8.05 -51.93 -0.42 0.30 16 31 H 0.08 1.61 7.46 -51.93 -0.39 1.22 16 32 H 0.06 0.72 6.85 -51.93 -0.36 0.37 16 33 H 0.09 1.43 7.25 -51.93 -0.38 1.06 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.21 6.87 -51.93 -0.36 0.85 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.28 8.11 -51.93 -0.42 -0.14 16 39 H 0.07 0.79 7.88 -51.93 -0.41 0.38 16 40 H 0.08 0.76 7.66 -51.93 -0.40 0.36 16 41 H 0.05 0.43 7.63 -51.93 -0.40 0.03 16 42 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.58 4.50 -51.93 -0.23 0.35 16 44 H 0.37 2.57 9.12 45.56 0.42 2.99 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -32.79 328.30 -9.88 -42.67 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.83 Total: 0.32 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -1.13 Total: -15.72 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -1.31 Total: -46.21 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.47 Total: -6.64 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.79 -9.88 -42.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934256866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.623 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds