Wall clock time and date at job start Mon Mar 30 2020 01:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00136 * 2 1 4 4 H 1.48505 * 109.47246 * 240.00043 * 3 2 1 5 5 H 1.48500 * 109.47408 * 120.00013 * 3 2 1 6 6 H 1.48504 * 109.47158 * 0.02562 * 3 2 1 7 7 C 1.37877 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46860 * 179.97438 * 9 7 2 11 11 N 1.46910 * 109.46640 * 175.74702 * 10 9 7 12 12 C 1.49217 * 111.00206 * 302.33509 * 11 10 9 13 13 C 1.55052 * 102.70628 * 198.46407 * 12 11 10 14 14 C 1.55712 * 103.11660 * 36.58587 * 13 12 11 15 15 H 1.09003 * 109.61613 * 100.06124 * 14 13 12 16 16 C 1.47441 * 110.99613 * 187.43172 * 11 10 9 17 17 H 1.08998 * 105.04693 * 38.98447 * 16 11 10 18 18 C 1.49118 * 113.50887 * 285.67239 * 16 11 10 19 19 C 1.52679 * 112.39623 * 262.30885 * 18 16 11 20 20 C 1.53475 * 107.48195 * 306.98452 * 19 18 16 21 21 N 1.45349 * 107.41074 * 219.11242 * 14 13 12 22 22 C 1.46909 * 110.99762 * 279.86662 * 21 14 13 23 23 C 1.52994 * 109.46901 * 77.19008 * 22 21 14 24 24 O 1.42894 * 109.47452 * 63.15190 * 23 22 21 25 25 H 0.97003 * 120.00329 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47274 * 299.99570 * 9 7 2 27 27 H 1.09001 * 109.47674 * 59.99389 * 9 7 2 28 28 H 1.08998 * 109.47113 * 295.74681 * 10 9 7 29 29 H 1.09001 * 109.47006 * 55.75445 * 10 9 7 30 30 H 1.09001 * 110.76379 * 316.76933 * 12 11 10 31 31 H 1.08999 * 110.75978 * 79.97534 * 12 11 10 32 32 H 1.09005 * 110.68351 * 154.99271 * 13 12 11 33 33 H 1.09001 * 110.69095 * 278.17677 * 13 12 11 34 34 H 1.09001 * 109.17489 * 141.44260 * 18 16 11 35 35 H 1.08995 * 108.72121 * 22.87007 * 18 16 11 36 36 H 1.09004 * 109.85669 * 187.48733 * 19 18 16 37 37 H 1.08996 * 109.85400 * 66.47485 * 19 18 16 38 38 H 1.09003 * 109.74258 * 307.88225 * 20 19 18 39 39 H 1.09004 * 109.73877 * 187.17851 * 20 19 18 40 40 H 1.09004 * 109.46734 * 197.19103 * 22 21 14 41 41 H 1.09003 * 109.46671 * 317.18759 * 22 21 14 42 42 H 1.09004 * 109.46708 * 183.15805 * 23 22 21 43 43 H 1.09000 * 109.46974 * 303.14603 * 23 22 21 44 44 H 0.96700 * 114.00190 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 3.1029 1.6964 1.2125 6 1 1.2842 2.7464 0.0006 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5135 -4.9318 0.1033 12 6 0.6688 -4.9643 1.3328 13 6 0.3867 -6.4783 1.5130 14 6 1.7224 -7.1422 1.0658 15 1 2.3094 -7.4110 1.9441 16 6 2.4415 -6.0632 0.2840 17 1 3.2167 -5.6893 0.9529 18 6 3.1759 -6.4347 -0.9595 19 6 2.5289 -7.6100 -1.6882 20 6 2.3720 -8.7513 -0.6741 21 7 1.3830 -8.3422 0.3192 22 6 1.0571 -9.4515 1.2256 23 6 -0.3549 -9.2578 1.7817 24 8 -1.2995 -9.3061 0.7105 25 1 -0.4851 -0.8400 0.0004 26 1 0.6240 -2.5567 0.8903 27 1 0.6245 -2.5571 -0.8896 28 1 2.8206 -3.6481 -0.9251 29 1 2.9209 -3.5624 0.8501 30 1 1.2162 -4.5687 2.1884 31 1 -0.2579 -4.4112 1.1797 32 1 0.1727 -6.7085 2.5567 33 1 -0.4350 -6.7960 0.8712 34 1 4.2015 -6.7008 -0.7036 35 1 3.1925 -5.5729 -1.6266 36 1 3.1665 -7.9314 -2.5117 37 1 1.5508 -7.3162 -2.0691 38 1 3.3272 -8.9433 -0.1853 39 1 2.0310 -9.6524 -1.1839 40 1 1.1065 -10.3935 0.6792 41 1 1.7722 -9.4706 2.0481 42 1 -0.5756 -10.0503 2.4968 43 1 -0.4196 -8.2905 2.2799 44 1 -2.2179 -9.1906 0.9905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934256866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:11 Heat of formation + Delta-G solvation = -63.557507 kcal Electronic energy + Delta-G solvation = -21838.917382 eV Core-core repulsion = 18789.864826 eV Total energy + Delta-G solvation = -3049.052556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50481 -38.45749 -37.18657 -35.70838 -34.83609 -33.01124 -30.40315 -29.68210 -29.33245 -26.01801 -24.95938 -23.88663 -23.07104 -22.42261 -21.65707 -19.64150 -18.84068 -18.25933 -17.56749 -16.70446 -16.34384 -16.03258 -15.71696 -15.54409 -15.39353 -15.16685 -14.84726 -14.70529 -14.29990 -13.88743 -13.66968 -13.61526 -13.24569 -12.86617 -12.73863 -12.59737 -12.39531 -12.11594 -12.01092 -11.94847 -11.85247 -11.76101 -11.57833 -11.41827 -11.23142 -10.75102 -10.59386 -10.55079 -9.44057 -9.03566 -8.72176 -6.42647 1.50922 1.59947 1.79567 2.54233 2.83719 2.90383 3.13727 3.42266 3.56064 3.66272 3.90500 4.02972 4.10379 4.17215 4.27487 4.30563 4.34242 4.35766 4.39916 4.54153 4.61094 4.62139 4.64562 4.72275 4.74896 4.80419 4.83388 4.88540 4.99064 5.00541 5.12194 5.18130 5.22626 5.30636 5.38665 5.40112 5.81777 5.98943 6.11216 6.15963 6.26894 6.35458 6.53775 7.05881 7.40070 8.68620 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030220 B = 0.004279 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.318123 B = 6542.498831 C = 7111.212373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.037 4.037 3 Si 1.120 2.880 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.281 1.281 7 C -0.622 4.622 8 H 0.049 0.951 9 C 0.022 3.978 10 C 0.080 3.920 11 N -0.517 5.517 12 C 0.031 3.969 13 C -0.100 4.100 14 C 0.109 3.891 15 H 0.056 0.944 16 C 0.076 3.924 17 H 0.012 0.988 18 C -0.106 4.106 19 C -0.106 4.106 20 C 0.070 3.930 21 N -0.548 5.548 22 C 0.058 3.942 23 C 0.067 3.933 24 O -0.581 6.581 25 H 0.254 0.746 26 H -0.005 1.005 27 H -0.015 1.015 28 H 0.060 0.940 29 H 0.018 0.982 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.039 0.961 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.851 -21.938 4.289 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.234 4.234 3 Si 0.940 3.060 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.207 1.207 7 C -0.661 4.661 8 H 0.068 0.932 9 C -0.015 4.015 10 C -0.048 4.048 11 N -0.241 5.241 12 C -0.097 4.097 13 C -0.138 4.138 14 C 0.000 4.000 15 H 0.073 0.927 16 C -0.033 4.033 17 H 0.030 0.970 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.057 4.057 21 N -0.274 5.274 22 C -0.069 4.069 23 C -0.011 4.011 24 O -0.388 6.388 25 H 0.063 0.937 26 H 0.013 0.987 27 H 0.004 0.996 28 H 0.078 0.922 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.544 -20.337 3.205 20.891 hybrid contribution 0.621 -1.179 1.426 1.952 sum 4.166 -21.516 4.632 22.399 Atomic orbital electron populations 1.70909 1.07950 1.29797 1.48459 1.27492 0.96573 1.06844 0.92486 0.82915 0.74119 0.70877 0.78063 1.19357 1.19318 1.20669 1.22425 0.94601 0.93365 1.55672 0.93218 1.19075 0.94779 0.93331 0.94359 1.22000 0.95265 0.88628 0.98928 1.65034 1.19818 1.02145 1.37123 1.23300 0.97473 0.98233 0.90729 1.23055 0.98043 0.91425 1.01312 1.21524 0.95262 0.89513 0.93689 0.92654 1.20968 0.93135 0.92079 0.97131 0.97031 1.20667 0.98463 0.99444 0.95782 1.21521 1.00771 0.94340 0.97736 1.21967 0.93089 0.97857 0.92748 1.59932 1.45879 1.03862 1.17698 1.22235 0.95436 0.93700 0.95561 1.22545 0.88824 1.00760 0.88926 1.86546 1.20136 1.96208 1.35905 0.93650 0.98701 0.99619 0.92197 0.96414 0.94705 0.92005 0.89350 0.89854 0.90638 0.92889 0.89563 0.92834 0.94269 0.89545 0.89866 0.91994 0.91929 0.92771 0.76519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.75 13.65 21.45 0.29 -59.46 16 2 C -0.04 -2.18 5.46 84.65 0.46 -1.72 16 3 Si 1.12 51.32 29.90 68.60 2.05 53.37 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 7 C -0.62 -37.07 9.11 25.60 0.23 -36.84 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 9 C 0.02 1.22 4.18 29.85 0.12 1.34 16 10 C 0.08 3.64 4.66 86.30 0.40 4.05 16 11 N -0.52 -20.30 5.24 -869.37 -4.55 -24.85 16 12 C 0.03 1.11 5.34 86.56 0.46 1.58 16 13 C -0.10 -2.74 4.64 32.23 0.15 -2.59 16 14 C 0.11 2.84 2.88 45.62 0.13 2.98 16 15 H 0.06 1.29 7.58 -2.39 -0.02 1.27 16 16 C 0.08 2.38 2.11 43.06 0.09 2.47 16 17 H 0.01 0.38 7.37 -2.39 -0.02 0.36 16 18 C -0.11 -2.95 5.51 29.25 0.16 -2.79 16 19 C -0.11 -2.56 6.23 30.65 0.19 -2.37 16 20 C 0.07 1.46 5.47 86.63 0.47 1.94 16 21 N -0.55 -12.78 3.87 -873.64 -3.38 -16.16 16 22 C 0.06 1.03 5.45 86.30 0.47 1.50 16 23 C 0.07 1.12 6.57 71.98 0.47 1.59 16 24 O -0.58 -11.85 13.41 -148.98 -2.00 -13.85 16 25 H 0.25 16.61 7.22 -92.71 -0.67 15.94 16 26 H -0.01 -0.30 6.48 -2.39 -0.02 -0.32 16 27 H -0.01 -0.88 8.01 -2.39 -0.02 -0.90 16 28 H 0.06 2.73 7.17 -2.39 -0.02 2.72 16 29 H 0.02 0.81 7.76 -2.39 -0.02 0.79 16 30 H 0.03 1.28 8.05 -2.39 -0.02 1.26 16 31 H 0.06 2.48 7.46 -2.39 -0.02 2.46 16 32 H 0.09 1.93 6.85 -2.38 -0.02 1.92 16 33 H 0.08 2.50 7.25 -2.39 -0.02 2.48 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.71 6.87 -2.39 -0.02 1.69 16 36 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.04 0.72 8.11 -2.39 -0.02 0.70 16 39 H 0.09 1.59 7.88 -2.38 -0.02 1.57 16 40 H 0.08 1.38 7.66 -2.39 -0.02 1.36 16 41 H 0.06 0.91 7.63 -2.39 -0.02 0.89 16 42 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.05 0.93 4.50 -2.39 -0.01 0.92 16 44 H 0.39 4.80 9.12 -74.06 -0.68 4.12 16 Total: -1.00 -72.02 328.30 -3.37 -75.39 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.40 Total: 14.43 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 3.83 Total: -28.87 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -7.64 Total: -100.46 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -2.00 Total: -13.85 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 2.05 Total: 53.37 kcal Total: -72.02 -3.37 -75.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934256866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.829 kcal (2) G-P(sol) polarization free energy of solvation -72.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds