Wall clock time and date at job start Mon Mar 30 2020 01:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.48606 * 110.99961 * 288.91947 * 11 10 9 13 13 C 1.55326 * 106.98953 * 233.72810 * 12 11 10 14 14 C 1.53553 * 101.86630 * 337.48009 * 13 12 11 15 15 H 1.08999 * 111.31856 * 281.78597 * 14 13 12 16 16 C 1.45893 * 111.00011 * 170.00164 * 11 10 9 17 17 H 1.09004 * 109.55526 * 34.74296 * 16 11 10 18 18 C 1.51637 * 117.35336 * 269.87402 * 16 11 10 19 19 C 1.53882 * 106.96851 * 181.26838 * 18 16 11 20 20 C 1.52601 * 111.20347 * 55.02402 * 19 18 16 21 21 N 1.45619 * 115.91827 * 153.97241 * 14 13 12 22 22 C 1.46898 * 110.99897 * 60.18787 * 21 14 13 23 23 C 1.53001 * 109.46989 * 169.99875 * 22 21 14 24 24 O 1.42899 * 109.47194 * 64.99585 * 23 22 21 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 29 29 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 30 30 H 1.09000 * 109.92934 * 353.06335 * 12 11 10 31 31 H 1.09001 * 109.92610 * 114.40003 * 12 11 10 32 32 H 1.08993 * 110.95426 * 219.33403 * 13 12 11 33 33 H 1.09002 * 110.95067 * 95.61990 * 13 12 11 34 34 H 1.08992 * 109.95770 * 300.63645 * 18 16 11 35 35 H 1.09007 * 109.95358 * 61.90616 * 18 16 11 36 36 H 1.08996 * 109.13823 * 294.57554 * 19 18 16 37 37 H 1.09000 * 109.08797 * 175.43490 * 19 18 16 38 38 H 1.09001 * 109.02958 * 185.74915 * 20 19 18 39 39 H 1.08997 * 109.02723 * 66.91353 * 20 19 18 40 40 H 1.09004 * 109.46814 * 289.99895 * 22 21 14 41 41 H 1.08997 * 109.47322 * 49.99514 * 22 21 14 42 42 H 1.09000 * 109.46601 * 184.99657 * 23 22 21 43 43 H 1.08995 * 109.46901 * 304.99592 * 23 22 21 44 44 H 0.96703 * 113.99790 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.8544 -5.1710 1.3110 13 6 1.3133 -6.5713 1.8019 14 6 1.7241 -7.2482 0.4863 15 1 0.8530 -7.5940 -0.0703 16 6 2.4110 -6.0577 -0.2376 17 1 3.3759 -5.8562 0.2276 18 6 2.6366 -6.4788 -1.6768 19 6 3.5873 -7.6884 -1.6471 20 6 3.0393 -8.7993 -0.7558 21 7 2.7189 -8.3057 0.5981 22 6 2.2341 -9.3960 1.4549 23 6 3.1870 -10.5886 1.3508 24 8 4.4625 -10.2272 1.8841 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.8719 -3.6044 -0.8906 29 1 2.8719 -3.6044 0.8894 30 1 1.1641 -4.4072 2.0244 31 1 -0.2290 -5.1554 1.1926 32 1 0.4907 -7.1071 2.2756 33 1 2.1633 -6.4877 2.4791 34 1 1.6888 -6.7618 -2.1346 35 1 3.0918 -5.6616 -2.2365 36 1 4.5579 -7.3708 -1.2661 37 1 3.7093 -8.0709 -2.6604 38 1 3.7833 -9.5922 -0.6782 39 1 2.1352 -9.2054 -1.2093 40 1 2.1917 -9.0540 2.4890 41 1 1.2381 -9.6974 1.1307 42 1 2.7815 -11.4279 1.9157 43 1 3.2983 -10.8744 0.3049 44 1 5.1182 -10.9372 1.8509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934256867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:15 Heat of formation + Delta-G solvation = -41.960697 kcal Electronic energy + Delta-G solvation = -21502.784070 eV Core-core repulsion = 18454.668022 eV Total energy + Delta-G solvation = -3048.116048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.25652 -37.63047 -36.08261 -33.59643 -33.32477 -31.44937 -29.06278 -28.60832 -27.76573 -24.54651 -23.91811 -22.37327 -21.37275 -20.83349 -19.64419 -19.21943 -17.66843 -16.54085 -16.07623 -15.51827 -15.12294 -14.78194 -14.55454 -14.34126 -14.03927 -13.67290 -13.38823 -13.29914 -12.87866 -12.58558 -12.31631 -12.12911 -11.90998 -11.46453 -11.31886 -11.05394 -11.01498 -10.84258 -10.75968 -10.67084 -10.51324 -10.43013 -10.13669 -9.93212 -9.74345 -9.27569 -9.06911 -8.36442 -8.28461 -7.64921 -5.94159 -3.96378 3.37180 3.41115 3.43822 3.70574 4.04649 4.39179 4.50906 4.70251 4.82510 4.88422 4.98045 5.00469 5.14932 5.16861 5.28046 5.36741 5.40750 5.41592 5.52816 5.59080 5.67399 5.77812 5.83702 5.93828 5.98983 6.08463 6.14753 6.25657 6.29504 6.39299 6.45853 6.50849 6.64078 6.98851 7.04959 7.11715 7.43287 7.54945 7.64488 7.86726 7.96603 8.16203 8.49999 9.11037 9.66872 11.17214 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035284 B = 0.003772 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.381323 B = 7422.195092 C = 7626.328993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.031 3.969 10 C 0.060 3.940 11 N -0.521 5.521 12 C 0.048 3.952 13 C -0.130 4.130 14 C 0.066 3.934 15 H 0.055 0.945 16 C 0.078 3.922 17 H 0.052 0.948 18 C -0.105 4.105 19 C -0.114 4.114 20 C 0.049 3.951 21 N -0.507 5.507 22 C 0.051 3.949 23 C 0.073 3.927 24 O -0.557 6.557 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.023 0.977 28 H 0.058 0.942 29 H 0.022 0.978 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.028 0.972 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.048 0.952 44 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 -22.817 0.861 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.067 4.067 11 N -0.245 5.245 12 C -0.080 4.080 13 C -0.168 4.168 14 C -0.043 4.043 15 H 0.073 0.927 16 C -0.031 4.031 17 H 0.070 0.930 18 C -0.143 4.143 19 C -0.152 4.152 20 C -0.078 4.078 21 N -0.232 5.232 22 C -0.077 4.077 23 C -0.005 4.005 24 O -0.361 6.361 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.699 -21.883 0.779 22.395 hybrid contribution 0.535 0.022 0.179 0.564 sum 5.233 -21.860 0.958 22.498 Atomic orbital electron populations 1.69969 1.06011 1.26590 1.50731 1.24990 0.94818 0.99113 0.95373 0.86668 0.79578 0.83210 0.78588 1.21309 1.20301 1.20250 1.21180 0.92939 0.91149 1.50793 0.92895 1.19044 0.93908 0.89991 0.97742 1.22496 0.96593 0.88678 0.98888 1.63421 1.29539 1.02130 1.29404 1.23129 0.99922 0.94658 0.90282 1.22607 1.00982 0.96686 0.96538 1.22548 0.92864 0.91906 0.96955 0.92742 1.21975 0.95561 0.90009 0.95575 0.93032 1.21379 0.99374 0.97117 0.96411 1.21584 0.99811 0.95283 0.98547 1.22227 0.99415 0.97678 0.88482 1.62598 1.40468 1.09233 1.10858 1.22188 0.95000 0.91034 0.99444 1.22325 0.84807 0.96043 0.97319 1.86659 1.22035 1.42281 1.85104 0.93005 0.96625 0.95831 0.92338 0.96004 0.91990 0.90759 0.91493 0.90748 0.91676 0.91350 0.91352 0.91459 0.90572 0.95338 0.89734 0.93594 0.93600 0.93365 0.78198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.82 5.03 -27.89 -0.14 0.68 16 10 C 0.06 1.34 4.48 -3.82 -0.02 1.33 16 11 N -0.52 -10.01 5.11 -223.79 -1.14 -11.16 16 12 C 0.05 0.84 6.20 -1.65 -0.01 0.83 16 13 C -0.13 -1.85 5.95 -25.21 -0.15 -2.00 16 14 C 0.07 0.94 2.08 -66.87 -0.14 0.80 16 15 H 0.05 0.79 8.06 -51.93 -0.42 0.37 16 16 C 0.08 1.28 1.86 -67.70 -0.13 1.15 16 17 H 0.05 0.93 7.82 -51.93 -0.41 0.52 16 18 C -0.10 -1.50 6.01 -26.96 -0.16 -1.66 16 19 C -0.11 -1.32 5.99 -26.48 -0.16 -1.48 16 20 C 0.05 0.55 4.75 -3.63 -0.02 0.53 16 21 N -0.51 -6.40 4.78 -225.44 -1.08 -7.47 16 22 C 0.05 0.53 5.24 -3.82 -0.02 0.51 16 23 C 0.07 0.61 6.63 37.16 0.25 0.85 16 24 O -0.56 -5.44 13.61 -35.23 -0.48 -5.92 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.44 7.31 -51.92 -0.38 0.06 16 27 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 29 H 0.02 0.49 7.91 -51.93 -0.41 0.08 16 30 H 0.06 1.16 7.12 -51.93 -0.37 0.79 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.75 5.91 -51.93 -0.31 0.44 16 39 H 0.03 0.30 8.11 -51.93 -0.42 -0.12 16 40 H 0.08 0.94 7.80 -51.93 -0.40 0.54 16 41 H 0.05 0.43 8.07 -51.93 -0.42 0.01 16 42 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.05 0.36 5.94 -51.93 -0.31 0.05 16 44 H 0.37 1.86 9.12 45.56 0.42 2.28 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -32.48 336.98 -10.21 -42.69 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -7.19 Total: -1.28 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.10 Total: -12.31 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -1.48 Total: -45.30 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.48 Total: -5.92 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.48 -10.21 -42.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934256867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.726 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds