Wall clock time and date at job start Mon Mar 30 2020 01:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.48606 * 110.99961 * 288.91947 * 11 10 9 13 13 C 1.55326 * 106.98953 * 233.72810 * 12 11 10 14 14 C 1.53553 * 101.86630 * 337.48009 * 13 12 11 15 15 H 1.08999 * 111.31856 * 281.78597 * 14 13 12 16 16 C 1.45893 * 111.00011 * 170.00164 * 11 10 9 17 17 H 1.09004 * 109.55526 * 34.74296 * 16 11 10 18 18 C 1.51637 * 117.35336 * 269.87402 * 16 11 10 19 19 C 1.53882 * 106.96851 * 181.26838 * 18 16 11 20 20 C 1.52601 * 111.20347 * 55.02402 * 19 18 16 21 21 N 1.45619 * 115.91827 * 153.97241 * 14 13 12 22 22 C 1.46898 * 110.99897 * 60.18787 * 21 14 13 23 23 C 1.53001 * 109.46989 * 169.99875 * 22 21 14 24 24 O 1.42899 * 109.47194 * 64.99585 * 23 22 21 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 29 29 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 30 30 H 1.09000 * 109.92934 * 353.06335 * 12 11 10 31 31 H 1.09001 * 109.92610 * 114.40003 * 12 11 10 32 32 H 1.08993 * 110.95426 * 219.33403 * 13 12 11 33 33 H 1.09002 * 110.95067 * 95.61990 * 13 12 11 34 34 H 1.08992 * 109.95770 * 300.63645 * 18 16 11 35 35 H 1.09007 * 109.95358 * 61.90616 * 18 16 11 36 36 H 1.08996 * 109.13823 * 294.57554 * 19 18 16 37 37 H 1.09000 * 109.08797 * 175.43490 * 19 18 16 38 38 H 1.09001 * 109.02958 * 185.74915 * 20 19 18 39 39 H 1.08997 * 109.02723 * 66.91353 * 20 19 18 40 40 H 1.09004 * 109.46814 * 289.99895 * 22 21 14 41 41 H 1.08997 * 109.47322 * 49.99514 * 22 21 14 42 42 H 1.09000 * 109.46601 * 184.99657 * 23 22 21 43 43 H 1.08995 * 109.46901 * 304.99592 * 23 22 21 44 44 H 0.96703 * 113.99790 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.8544 -5.1710 1.3110 13 6 1.3133 -6.5713 1.8019 14 6 1.7241 -7.2482 0.4863 15 1 0.8530 -7.5940 -0.0703 16 6 2.4110 -6.0577 -0.2376 17 1 3.3759 -5.8562 0.2276 18 6 2.6366 -6.4788 -1.6768 19 6 3.5873 -7.6884 -1.6471 20 6 3.0393 -8.7993 -0.7558 21 7 2.7189 -8.3057 0.5981 22 6 2.2341 -9.3960 1.4549 23 6 3.1870 -10.5886 1.3508 24 8 4.4625 -10.2272 1.8841 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.8719 -3.6044 -0.8906 29 1 2.8719 -3.6044 0.8894 30 1 1.1641 -4.4072 2.0244 31 1 -0.2290 -5.1554 1.1926 32 1 0.4907 -7.1071 2.2756 33 1 2.1633 -6.4877 2.4791 34 1 1.6888 -6.7618 -2.1346 35 1 3.0918 -5.6616 -2.2365 36 1 4.5579 -7.3708 -1.2661 37 1 3.7093 -8.0709 -2.6604 38 1 3.7833 -9.5922 -0.6782 39 1 2.1352 -9.2054 -1.2093 40 1 2.1917 -9.0540 2.4890 41 1 1.2381 -9.6974 1.1307 42 1 2.7815 -11.4279 1.9157 43 1 3.2983 -10.8744 0.3049 44 1 5.1182 -10.9372 1.8509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934256867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:14 Heat of formation + Delta-G solvation = -67.620239 kcal Electronic energy + Delta-G solvation = -21503.896752 eV Core-core repulsion = 18454.668022 eV Total energy + Delta-G solvation = -3049.228730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.42786 -38.62836 -37.08481 -35.37601 -34.60910 -33.16720 -30.42650 -29.79569 -29.04929 -26.30703 -25.11935 -23.71555 -22.63832 -22.12001 -20.81525 -20.63167 -18.57170 -18.31769 -17.28627 -16.72871 -16.56310 -16.23159 -15.92727 -15.49922 -15.10249 -14.97094 -14.69309 -14.43839 -14.21148 -14.08364 -13.75033 -13.16666 -13.12716 -13.04736 -12.94338 -12.61839 -12.51185 -12.31847 -12.19474 -11.85383 -11.78541 -11.62546 -11.59809 -11.36628 -11.28747 -10.93775 -10.74356 -10.55580 -9.32976 -9.18533 -8.20402 -6.32330 1.39212 1.43006 1.50922 2.39665 2.70973 3.12465 3.16568 3.43294 3.54931 3.70751 4.01712 4.03485 4.07372 4.22142 4.29705 4.29926 4.38198 4.41825 4.46757 4.51758 4.57841 4.64434 4.68208 4.79891 4.84957 4.87878 4.95220 4.99749 5.02270 5.04803 5.09569 5.20565 5.24645 5.40312 5.45383 5.63347 5.78320 6.00669 6.08069 6.17287 6.27645 6.34370 6.83990 7.02067 7.36618 8.91635 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035284 B = 0.003772 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.381323 B = 7422.195092 C = 7626.328993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.281 1.281 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.042 3.958 10 C 0.080 3.920 11 N -0.533 5.533 12 C 0.044 3.956 13 C -0.116 4.116 14 C 0.080 3.920 15 H 0.056 0.944 16 C 0.074 3.926 17 H 0.033 0.967 18 C -0.104 4.104 19 C -0.107 4.107 20 C 0.050 3.950 21 N -0.522 5.522 22 C 0.046 3.954 23 C 0.075 3.925 24 O -0.585 6.585 25 H 0.264 0.736 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.057 0.943 29 H 0.017 0.983 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.119 -24.482 0.689 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.206 1.206 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.076 0.924 9 C 0.004 3.996 10 C -0.048 4.048 11 N -0.257 5.257 12 C -0.084 4.084 13 C -0.155 4.155 14 C -0.029 4.029 15 H 0.074 0.926 16 C -0.035 4.035 17 H 0.051 0.949 18 C -0.142 4.142 19 C -0.146 4.146 20 C -0.078 4.078 21 N -0.247 5.247 22 C -0.081 4.081 23 C -0.002 4.002 24 O -0.392 6.392 25 H 0.073 0.927 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.075 0.925 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.058 0.942 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 5.739 -23.588 0.608 24.284 hybrid contribution 0.186 0.502 0.240 0.587 sum 5.925 -23.086 0.848 23.849 Atomic orbital electron populations 1.70109 1.07823 1.27885 1.51249 1.25974 0.95778 1.03323 0.94499 0.85473 0.78274 0.77914 0.79210 1.20578 1.19189 1.19097 1.21591 0.93433 0.92370 1.51248 0.92403 1.18848 0.94017 0.91754 0.94959 1.22085 0.95228 0.88955 0.98484 1.63355 1.29918 1.01880 1.30550 1.23150 0.99707 0.96333 0.89226 1.22497 1.01562 0.94650 0.96750 1.22358 0.92947 0.91663 0.95959 0.92621 1.22065 0.94234 0.89899 0.97322 0.94891 1.21399 1.00082 0.98025 0.94693 1.21563 0.98404 0.94315 1.00277 1.22286 1.00369 0.97609 0.87487 1.62562 1.39970 1.09955 1.12184 1.22289 0.96435 0.91086 0.98307 1.22353 0.84021 0.95433 0.98437 1.86600 1.23113 1.44082 1.85404 0.92686 0.98973 0.98972 0.92478 0.96516 0.94085 0.90899 0.88928 0.91305 0.91594 0.92707 0.92239 0.88990 0.88775 0.94225 0.90847 0.92252 0.91434 0.92082 0.75988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.55 -32.67 9.11 25.60 0.23 -32.44 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.04 2.36 5.03 29.85 0.15 2.51 16 10 C 0.08 3.73 4.48 86.30 0.39 4.11 16 11 N -0.53 -21.16 5.11 -861.93 -4.40 -25.56 16 12 C 0.04 1.58 6.20 86.77 0.54 2.12 16 13 C -0.12 -3.24 5.95 31.58 0.19 -3.05 16 14 C 0.08 2.18 2.08 46.15 0.10 2.27 16 15 H 0.06 1.51 8.06 -2.39 -0.02 1.49 16 16 C 0.07 2.42 1.86 45.46 0.08 2.51 16 17 H 0.03 1.21 7.82 -2.39 -0.02 1.19 16 18 C -0.10 -2.92 6.01 30.44 0.18 -2.73 16 19 C -0.11 -2.28 5.99 30.76 0.18 -2.10 16 20 C 0.05 0.95 4.75 86.03 0.41 1.36 16 21 N -0.52 -12.12 4.78 -867.15 -4.14 -16.26 16 22 C 0.05 0.85 5.24 86.30 0.45 1.30 16 23 C 0.08 1.01 6.63 71.98 0.48 1.49 16 24 O -0.58 -9.99 13.61 -148.98 -2.03 -12.01 16 25 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 26 H -0.01 -0.49 7.31 -2.38 -0.02 -0.51 16 27 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H 0.06 2.62 8.08 -2.39 -0.02 2.60 16 29 H 0.02 0.78 7.91 -2.39 -0.02 0.76 16 30 H 0.04 1.63 7.12 -2.39 -0.02 1.61 16 31 H 0.07 2.60 8.14 -2.39 -0.02 2.59 16 32 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.07 1.83 8.12 -2.39 -0.02 1.81 16 35 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.51 5.91 -2.39 -0.01 1.50 16 39 H 0.04 0.69 8.11 -2.39 -0.02 0.68 16 40 H 0.07 1.50 7.80 -2.38 -0.02 1.48 16 41 H 0.06 0.93 8.07 -2.39 -0.02 0.91 16 42 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.06 0.66 5.94 -2.39 -0.01 0.65 16 44 H 0.39 2.93 9.12 -74.06 -0.68 2.25 16 Total: -1.00 -71.34 336.98 -4.14 -75.48 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.28 Total: 10.98 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 3.84 Total: -22.06 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -8.26 Total: -99.88 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -2.03 Total: -12.01 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -71.34 -4.14 -75.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934256867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.859 kcal (2) G-P(sol) polarization free energy of solvation -71.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds