Wall clock time and date at job start Mon Mar 30 2020 01:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48500 * 109.46872 * 269.99892 * 3 2 1 5 5 H 1.48497 * 109.47068 * 29.99929 * 3 2 1 6 6 H 1.48505 * 109.47102 * 149.99932 * 3 2 1 7 7 C 1.37882 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99714 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47004 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47098 * 174.89627 * 10 9 7 12 12 C 1.49223 * 110.99708 * 65.66060 * 11 10 9 13 13 C 1.55058 * 102.70124 * 161.52925 * 12 11 10 14 14 C 1.55715 * 103.11092 * 323.39474 * 13 12 11 15 15 H 1.09007 * 109.60455 * 260.46861 * 14 13 12 16 16 C 1.47433 * 110.99959 * 180.57610 * 11 10 9 17 17 H 1.09007 * 105.02524 * 321.02522 * 16 11 10 18 18 C 1.49754 * 113.49777 * 74.95422 * 16 11 10 19 19 C 1.52679 * 112.70348 * 98.03031 * 18 16 11 20 20 C 1.53466 * 107.50080 * 52.71516 * 19 18 16 21 21 N 1.45342 * 107.44862 * 141.41459 * 14 13 12 22 22 C 1.46898 * 111.00227 * 80.07734 * 21 14 13 23 23 C 1.53002 * 109.47312 * 176.26543 * 22 21 14 24 24 O 1.42900 * 109.47429 * 62.03796 * 23 22 21 25 25 H 0.97000 * 119.99940 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46895 * 60.00607 * 9 7 2 27 27 H 1.09002 * 109.47584 * 300.00351 * 9 7 2 28 28 H 1.08997 * 109.46716 * 54.89948 * 10 9 7 29 29 H 1.09000 * 109.47128 * 294.89968 * 10 9 7 30 30 H 1.08999 * 110.76423 * 43.23273 * 12 11 10 31 31 H 1.08998 * 110.77233 * 279.83420 * 12 11 10 32 32 H 1.08991 * 110.69540 * 204.98531 * 13 12 11 33 33 H 1.09007 * 110.68867 * 81.79425 * 13 12 11 34 34 H 1.09010 * 108.83831 * 218.85641 * 18 16 11 35 35 H 1.08998 * 108.83815 * 337.30130 * 18 16 11 36 36 H 1.09004 * 109.84913 * 172.21767 * 19 18 16 37 37 H 1.09000 * 109.84757 * 293.14469 * 19 18 16 38 38 H 1.09006 * 109.74800 * 172.82126 * 20 19 18 39 39 H 1.09004 * 109.74905 * 52.10247 * 20 19 18 40 40 H 1.08999 * 109.46858 * 56.26770 * 22 21 14 41 41 H 1.09003 * 109.47761 * 296.26232 * 22 21 14 42 42 H 1.09001 * 109.46994 * 302.03561 * 23 22 21 43 43 H 1.09003 * 109.47158 * 182.04114 * 23 22 21 44 44 H 0.96694 * 114.00046 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 7 1.5149 -4.9307 0.1258 12 6 0.6657 -5.1787 -1.0759 13 6 0.3853 -6.7011 -0.9868 14 6 1.7238 -7.2752 -0.4359 15 1 2.3117 -7.6847 -1.2573 16 6 2.4437 -6.0755 0.1429 17 1 3.2160 -5.8238 -0.5841 18 6 3.1751 -6.2317 1.4403 19 6 2.5350 -7.2723 2.3560 20 6 2.3830 -8.5677 1.5472 21 7 1.3906 -8.3348 0.5016 22 6 1.0684 -9.5813 -0.2057 23 6 0.8146 -10.6946 0.8128 24 8 -0.3096 -10.3501 1.6249 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5575 -0.8881 27 1 0.6245 -2.5563 0.8919 28 1 2.9310 -3.5539 0.8416 29 1 2.8094 -3.6576 -0.9311 30 1 1.2094 -4.9389 -1.9896 31 1 -0.2627 -4.6107 -1.0170 32 1 0.1674 -7.1110 -1.9729 33 1 -0.4333 -6.9021 -0.2955 34 1 4.2023 -6.5311 1.2315 35 1 3.1868 -5.2713 1.9556 36 1 3.1753 -7.4485 3.2204 37 1 1.5564 -6.9234 2.6855 38 1 2.0472 -9.3728 2.2009 39 1 3.3385 -8.8339 1.0952 40 1 1.9032 -9.8604 -0.8486 41 1 0.1753 -9.4342 -0.8131 42 1 1.6949 -10.8172 1.4439 43 1 0.6112 -11.6279 0.2877 44 1 -0.5284 -11.0122 2.2948 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934256917.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:20 Heat of formation + Delta-G solvation = -35.703734 kcal Electronic energy + Delta-G solvation = -21602.573609 eV Core-core repulsion = 18554.728883 eV Total energy + Delta-G solvation = -3047.844726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.16709 -37.62236 -35.93713 -33.67509 -33.31611 -31.43805 -29.13510 -28.67792 -27.61499 -24.65204 -23.87795 -22.43369 -21.42131 -21.14646 -19.83720 -18.39398 -17.53366 -16.61056 -16.27151 -15.39232 -14.95230 -14.75254 -14.54514 -14.33403 -14.19331 -13.72353 -13.54518 -13.24959 -12.89631 -12.33546 -12.27468 -11.85710 -11.76758 -11.61558 -11.35245 -11.07358 -10.93468 -10.73969 -10.67187 -10.55344 -10.45005 -10.32400 -10.13837 -10.04808 -9.73209 -9.30867 -9.07064 -8.29730 -8.10013 -7.71040 -5.95159 -3.97491 3.34567 3.40676 3.44079 3.78998 4.11844 4.38057 4.54923 4.67192 4.81495 4.94096 5.01721 5.11432 5.20889 5.23749 5.31938 5.40596 5.42375 5.47992 5.59249 5.65392 5.72742 5.82721 5.89922 5.93133 6.03795 6.10578 6.19379 6.27432 6.38953 6.42427 6.54118 6.55768 6.63626 7.02580 7.18718 7.35288 7.51148 7.52073 7.59169 7.80834 7.95312 8.14345 8.48182 9.09724 9.65787 11.16245 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037564 B = 0.003861 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.215442 B = 7251.143108 C = 7525.212475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.030 3.970 10 C 0.054 3.946 11 N -0.500 5.500 12 C 0.037 3.963 13 C -0.114 4.114 14 C 0.103 3.897 15 H 0.038 0.962 16 C 0.077 3.923 17 H 0.019 0.981 18 C -0.105 4.105 19 C -0.110 4.110 20 C 0.062 3.938 21 N -0.530 5.530 22 C 0.061 3.939 23 C 0.074 3.926 24 O -0.554 6.554 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.026 0.974 28 H 0.061 0.939 29 H 0.017 0.983 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.023 0.977 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.045 0.955 44 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.709 -22.534 0.983 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.073 4.073 11 N -0.225 5.225 12 C -0.092 4.092 13 C -0.153 4.153 14 C -0.006 4.006 15 H 0.056 0.944 16 C -0.032 4.032 17 H 0.037 0.963 18 C -0.143 4.143 19 C -0.148 4.148 20 C -0.066 4.066 21 N -0.255 5.255 22 C -0.067 4.067 23 C -0.004 4.004 24 O -0.357 6.357 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.041 0.959 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.905 -21.661 1.302 21.894 hybrid contribution 1.820 0.226 -0.986 2.082 sum 4.725 -21.436 0.316 21.953 Atomic orbital electron populations 1.69973 1.06000 1.26515 1.50688 1.24989 0.94820 0.99117 0.95366 0.86608 0.79860 0.83589 0.78010 1.20760 1.21192 1.19913 1.21196 0.92923 0.91109 1.50801 0.92886 1.19045 0.93901 0.89983 0.97816 1.22535 0.97266 0.89138 0.98377 1.65098 1.18788 1.01161 1.37462 1.23274 0.98962 0.95153 0.91767 1.22918 0.97552 0.94845 0.99976 1.21576 0.96184 0.90679 0.92199 0.94439 1.20916 0.93846 0.91743 0.96732 0.96251 1.20750 0.97245 1.00817 0.95452 1.21541 1.02077 0.94223 0.96925 1.22042 0.92245 0.98572 0.93692 1.60006 1.45387 1.05613 1.14531 1.22117 1.00638 0.88950 0.94965 1.22300 0.89048 0.96138 0.92901 1.86684 1.49311 1.49035 1.50717 0.93024 0.96672 0.95534 0.92009 0.96429 0.94283 0.89418 0.92277 0.89326 0.92898 0.90507 0.91919 0.90031 0.90438 0.95927 0.94088 0.89996 0.93442 0.93696 0.78271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.80 4.85 -27.88 -0.14 0.67 16 10 C 0.05 1.19 4.55 -3.82 -0.02 1.18 16 11 N -0.50 -9.73 5.18 -225.78 -1.17 -10.90 16 12 C 0.04 0.66 5.67 -1.44 -0.01 0.65 16 13 C -0.11 -1.70 6.18 -24.20 -0.15 -1.85 16 14 C 0.10 1.47 2.86 -67.91 -0.19 1.27 16 15 H 0.04 0.51 7.79 -51.93 -0.40 0.10 16 16 C 0.08 1.25 2.14 -69.83 -0.15 1.10 16 17 H 0.02 0.33 7.51 -51.93 -0.39 -0.06 16 18 C -0.10 -1.54 5.51 -28.50 -0.16 -1.69 16 19 C -0.11 -1.43 6.24 -26.65 -0.17 -1.60 16 20 C 0.06 0.72 5.00 -4.05 -0.02 0.70 16 21 N -0.53 -6.89 3.97 -227.50 -0.90 -7.79 16 22 C 0.06 0.64 5.38 -3.82 -0.02 0.62 16 23 C 0.07 0.63 6.49 37.16 0.24 0.87 16 24 O -0.55 -5.59 13.52 -35.23 -0.48 -6.07 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.01 0.42 7.31 -51.93 -0.38 0.04 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.36 7.04 -51.93 -0.37 0.99 16 29 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 30 H 0.04 0.69 7.97 -51.93 -0.41 0.28 16 31 H 0.09 1.69 7.75 -51.93 -0.40 1.29 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.43 7.99 -51.92 -0.41 1.02 16 34 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.08 1.25 6.87 -51.93 -0.36 0.90 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.08 0.81 5.68 -51.93 -0.29 0.52 16 39 H 0.02 0.25 8.11 -51.93 -0.42 -0.17 16 40 H 0.04 0.38 7.96 -51.93 -0.41 -0.03 16 41 H 0.08 0.91 7.80 -51.93 -0.40 0.50 16 42 H 0.05 0.36 6.05 -51.93 -0.31 0.04 16 43 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.37 2.00 9.12 45.56 0.42 2.41 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -32.50 333.94 -10.03 -42.53 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.05 Total: -1.27 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.19 Total: -11.91 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -1.34 Total: -45.32 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.48 Total: -6.07 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.50 -10.03 -42.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934256917.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.827 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds