Wall clock time and date at job start Mon Mar 30 2020 01:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48500 * 109.46872 * 269.99892 * 3 2 1 5 5 H 1.48497 * 109.47068 * 29.99929 * 3 2 1 6 6 H 1.48505 * 109.47102 * 149.99932 * 3 2 1 7 7 C 1.37882 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99714 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47004 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47098 * 174.89627 * 10 9 7 12 12 C 1.49223 * 110.99708 * 65.66060 * 11 10 9 13 13 C 1.55058 * 102.70124 * 161.52925 * 12 11 10 14 14 C 1.55715 * 103.11092 * 323.39474 * 13 12 11 15 15 H 1.09007 * 109.60455 * 260.46861 * 14 13 12 16 16 C 1.47433 * 110.99959 * 180.57610 * 11 10 9 17 17 H 1.09007 * 105.02524 * 321.02522 * 16 11 10 18 18 C 1.49754 * 113.49777 * 74.95422 * 16 11 10 19 19 C 1.52679 * 112.70348 * 98.03031 * 18 16 11 20 20 C 1.53466 * 107.50080 * 52.71516 * 19 18 16 21 21 N 1.45342 * 107.44862 * 141.41459 * 14 13 12 22 22 C 1.46898 * 111.00227 * 80.07734 * 21 14 13 23 23 C 1.53002 * 109.47312 * 176.26543 * 22 21 14 24 24 O 1.42900 * 109.47429 * 62.03796 * 23 22 21 25 25 H 0.97000 * 119.99940 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46895 * 60.00607 * 9 7 2 27 27 H 1.09002 * 109.47584 * 300.00351 * 9 7 2 28 28 H 1.08997 * 109.46716 * 54.89948 * 10 9 7 29 29 H 1.09000 * 109.47128 * 294.89968 * 10 9 7 30 30 H 1.08999 * 110.76423 * 43.23273 * 12 11 10 31 31 H 1.08998 * 110.77233 * 279.83420 * 12 11 10 32 32 H 1.08991 * 110.69540 * 204.98531 * 13 12 11 33 33 H 1.09007 * 110.68867 * 81.79425 * 13 12 11 34 34 H 1.09010 * 108.83831 * 218.85641 * 18 16 11 35 35 H 1.08998 * 108.83815 * 337.30130 * 18 16 11 36 36 H 1.09004 * 109.84913 * 172.21767 * 19 18 16 37 37 H 1.09000 * 109.84757 * 293.14469 * 19 18 16 38 38 H 1.09006 * 109.74800 * 172.82126 * 20 19 18 39 39 H 1.09004 * 109.74905 * 52.10247 * 20 19 18 40 40 H 1.08999 * 109.46858 * 56.26770 * 22 21 14 41 41 H 1.09003 * 109.47761 * 296.26232 * 22 21 14 42 42 H 1.09001 * 109.46994 * 302.03561 * 23 22 21 43 43 H 1.09003 * 109.47158 * 182.04114 * 23 22 21 44 44 H 0.96694 * 114.00046 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 7 1.5149 -4.9307 0.1258 12 6 0.6657 -5.1787 -1.0759 13 6 0.3853 -6.7011 -0.9868 14 6 1.7238 -7.2752 -0.4359 15 1 2.3117 -7.6847 -1.2573 16 6 2.4437 -6.0755 0.1429 17 1 3.2160 -5.8238 -0.5841 18 6 3.1751 -6.2317 1.4403 19 6 2.5350 -7.2723 2.3560 20 6 2.3830 -8.5677 1.5472 21 7 1.3906 -8.3348 0.5016 22 6 1.0684 -9.5813 -0.2057 23 6 0.8146 -10.6946 0.8128 24 8 -0.3096 -10.3501 1.6249 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5575 -0.8881 27 1 0.6245 -2.5563 0.8919 28 1 2.9310 -3.5539 0.8416 29 1 2.8094 -3.6576 -0.9311 30 1 1.2094 -4.9389 -1.9896 31 1 -0.2627 -4.6107 -1.0170 32 1 0.1674 -7.1110 -1.9729 33 1 -0.4333 -6.9021 -0.2955 34 1 4.2023 -6.5311 1.2315 35 1 3.1868 -5.2713 1.9556 36 1 3.1753 -7.4485 3.2204 37 1 1.5564 -6.9234 2.6855 38 1 2.0472 -9.3728 2.2009 39 1 3.3385 -8.8339 1.0952 40 1 1.9032 -9.8604 -0.8486 41 1 0.1753 -9.4342 -0.8131 42 1 1.6949 -10.8172 1.4439 43 1 0.6112 -11.6279 0.2877 44 1 -0.5284 -11.0122 2.2948 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934256917.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:20 Heat of formation + Delta-G solvation = -61.015026 kcal Electronic energy + Delta-G solvation = -21603.671189 eV Core-core repulsion = 18554.728883 eV Total energy + Delta-G solvation = -3048.942306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.36231 -38.62450 -36.96028 -35.37162 -34.74147 -33.13917 -30.45457 -29.97629 -28.90538 -26.32551 -25.15375 -23.80049 -22.89044 -22.06249 -21.47443 -19.58416 -18.49226 -18.21674 -17.56986 -16.69981 -16.46511 -16.13157 -15.93690 -15.74623 -15.21969 -15.07778 -14.53394 -14.46543 -14.28250 -13.88739 -13.64743 -13.32449 -13.12007 -13.01444 -12.76685 -12.57130 -12.38421 -12.30061 -12.10010 -11.90974 -11.79157 -11.70240 -11.40486 -11.33381 -11.29969 -11.04539 -10.70168 -10.56477 -9.33562 -8.96322 -8.20941 -6.33141 1.38811 1.41073 1.52257 2.39307 2.87464 3.00293 3.12092 3.49017 3.54333 3.71588 3.99443 4.09614 4.16343 4.26361 4.29375 4.32812 4.36642 4.46088 4.46725 4.56573 4.59865 4.63773 4.70671 4.78152 4.83824 4.86385 4.96087 5.03606 5.04765 5.06733 5.13042 5.24915 5.37233 5.41748 5.46423 5.60904 5.78009 6.02663 6.15576 6.27866 6.32509 6.41354 6.83429 7.06875 7.36014 8.91405 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037564 B = 0.003861 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.215442 B = 7251.143108 C = 7525.212475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.041 3.959 10 C 0.074 3.926 11 N -0.519 5.519 12 C 0.033 3.967 13 C -0.101 4.101 14 C 0.109 3.891 15 H 0.055 0.945 16 C 0.076 3.924 17 H 0.015 0.985 18 C -0.106 4.106 19 C -0.106 4.106 20 C 0.066 3.934 21 N -0.548 5.548 22 C 0.056 3.944 23 C 0.075 3.925 24 O -0.583 6.583 25 H 0.264 0.736 26 H -0.009 1.009 27 H -0.010 1.010 28 H 0.061 0.939 29 H 0.019 0.981 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.037 0.963 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 -24.178 0.871 24.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.003 3.997 10 C -0.054 4.054 11 N -0.243 5.243 12 C -0.095 4.095 13 C -0.140 4.140 14 C 0.000 4.000 15 H 0.072 0.928 16 C -0.033 4.033 17 H 0.033 0.967 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.061 4.061 21 N -0.274 5.274 22 C -0.071 4.071 23 C -0.002 4.002 24 O -0.390 6.390 25 H 0.073 0.927 26 H 0.009 0.991 27 H 0.009 0.991 28 H 0.079 0.921 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 4.701 -23.345 1.200 23.844 hybrid contribution 1.198 0.698 -0.934 1.672 sum 5.899 -22.647 0.266 23.404 Atomic orbital electron populations 1.70119 1.07897 1.27834 1.51288 1.25995 0.95770 1.03416 0.94509 0.85397 0.78628 0.78152 0.78552 1.19632 1.20598 1.18667 1.21609 0.93467 0.92233 1.51144 0.92210 1.18843 0.94056 0.91959 0.94832 1.22133 0.95851 0.89110 0.98328 1.65015 1.19678 1.01266 1.38376 1.23263 0.97611 0.97355 0.91262 1.22815 0.97739 0.92323 1.01126 1.21458 0.95254 0.90497 0.92797 0.92768 1.21070 0.93238 0.91309 0.97688 0.96679 1.20783 0.98436 1.00329 0.94814 1.21509 1.00730 0.94504 0.97638 1.22054 0.92703 0.97950 0.93358 1.59947 1.46066 1.06513 1.14874 1.22234 1.00793 0.88401 0.95655 1.22352 0.89101 0.96029 0.92737 1.86629 1.50054 1.50639 1.51702 0.92704 0.99085 0.99122 0.92053 0.96291 0.94189 0.92003 0.89722 0.90839 0.90682 0.92883 0.89631 0.92988 0.88845 0.94460 0.92380 0.90995 0.92190 0.91444 0.76142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.63 13.29 21.45 0.28 -58.34 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -32.44 9.11 25.60 0.23 -32.20 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.04 2.30 4.85 29.85 0.14 2.44 16 10 C 0.07 3.37 4.55 86.31 0.39 3.76 16 11 N -0.52 -20.84 5.18 -868.23 -4.49 -25.33 16 12 C 0.03 1.23 5.67 86.56 0.49 1.72 16 13 C -0.10 -2.98 6.18 32.24 0.20 -2.78 16 14 C 0.11 2.95 2.86 45.63 0.13 3.08 16 15 H 0.05 1.31 7.79 -2.38 -0.02 1.29 16 16 C 0.08 2.42 2.14 43.25 0.09 2.52 16 17 H 0.02 0.49 7.51 -2.38 -0.02 0.47 16 18 C -0.11 -3.00 5.51 29.45 0.16 -2.84 16 19 C -0.11 -2.61 6.24 30.64 0.19 -2.41 16 20 C 0.07 1.36 5.00 86.62 0.43 1.79 16 21 N -0.55 -13.12 3.97 -873.67 -3.47 -16.59 16 22 C 0.06 1.02 5.38 86.30 0.46 1.49 16 23 C 0.08 1.04 6.49 71.98 0.47 1.51 16 24 O -0.58 -10.56 13.52 -148.98 -2.01 -12.58 16 25 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 26 H -0.01 -0.56 7.31 -2.39 -0.02 -0.58 16 27 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 28 H 0.06 2.78 7.04 -2.39 -0.02 2.76 16 29 H 0.02 0.85 7.85 -2.39 -0.02 0.84 16 30 H 0.04 1.46 7.97 -2.39 -0.02 1.44 16 31 H 0.06 2.56 7.75 -2.39 -0.02 2.54 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 2.39 7.99 -2.38 -0.02 2.37 16 34 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.05 1.75 6.87 -2.39 -0.02 1.73 16 36 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.65 5.68 -2.38 -0.01 1.63 16 39 H 0.04 0.68 8.11 -2.38 -0.02 0.66 16 40 H 0.06 0.87 7.96 -2.39 -0.02 0.85 16 41 H 0.07 1.44 7.80 -2.39 -0.02 1.42 16 42 H 0.06 0.68 6.05 -2.39 -0.01 0.66 16 43 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.39 3.38 9.12 -74.06 -0.68 2.71 16 Total: -1.00 -71.95 333.94 -3.52 -75.46 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.29 Total: 11.38 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 3.86 Total: -21.40 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -7.68 Total: -100.27 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -2.01 Total: -12.58 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -71.95 -3.52 -75.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934256917.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.448 kcal (2) G-P(sol) polarization free energy of solvation -71.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds