Wall clock time and date at job start Mon Mar 30 2020 01:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99880 * 2 1 4 4 H 1.48498 * 109.47182 * 269.99671 * 3 2 1 5 5 H 1.48496 * 109.47260 * 29.99700 * 3 2 1 6 6 H 1.48507 * 109.47262 * 149.99974 * 3 2 1 7 7 C 1.37878 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99805 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99940 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46974 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46673 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.46893 * 179.97438 * 11 10 9 13 13 C 1.46902 * 111.00100 * 185.16903 * 12 11 10 14 14 C 1.52993 * 109.47132 * 61.38217 * 13 12 11 15 15 C 1.50692 * 109.47433 * 54.51351 * 14 13 12 16 16 N 1.34776 * 120.00101 * 174.03745 * 15 14 13 17 17 O 1.21284 * 120.00468 * 354.04129 * 15 14 13 18 18 C 1.53003 * 109.46901 * 301.37750 * 13 12 11 19 19 C 1.53001 * 109.47207 * 300.00349 * 18 13 12 20 20 C 1.52999 * 109.47051 * 299.99727 * 19 18 13 21 21 C 1.53003 * 109.46892 * 60.00081 * 20 19 18 22 22 C 1.52993 * 109.47609 * 299.99998 * 21 20 19 23 23 H 0.97000 * 120.00072 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46719 * 299.99901 * 9 7 2 25 25 H 1.08996 * 109.47171 * 59.99635 * 9 7 2 26 26 H 1.08995 * 109.47060 * 299.99378 * 10 9 7 27 27 H 1.08996 * 109.47350 * 59.99891 * 10 9 7 28 28 H 1.08996 * 109.47756 * 299.99697 * 11 10 9 29 29 H 1.09008 * 109.47151 * 60.00471 * 11 10 9 30 30 H 1.00894 * 110.99821 * 61.20980 * 12 11 10 31 31 H 1.09004 * 109.47238 * 174.51766 * 14 13 12 32 32 H 1.09002 * 109.47023 * 294.51483 * 14 13 12 33 33 H 0.97002 * 120.00246 * 0.02562 * 16 15 14 34 34 H 0.97006 * 120.00478 * 180.02562 * 16 15 14 35 35 H 1.09007 * 109.46819 * 60.00045 * 18 13 12 36 36 H 1.08999 * 109.46962 * 179.97438 * 18 13 12 37 37 H 1.08996 * 109.46877 * 179.97438 * 19 18 13 38 38 H 1.09000 * 109.47101 * 59.99654 * 19 18 13 39 39 H 1.08999 * 109.47037 * 300.00470 * 20 19 18 40 40 H 1.08993 * 109.46919 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.46979 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.46962 * 60.00343 * 21 20 19 43 43 H 1.09010 * 109.46793 * 300.00272 * 22 21 20 44 44 H 1.08996 * 109.47280 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5516 -2.6364 0.0022 12 7 6.0413 -4.0214 0.0040 13 6 7.5045 -4.0623 0.1275 14 6 7.9225 -3.4226 1.4530 15 6 7.1953 -4.0969 2.5876 16 7 7.4949 -3.7802 3.8629 17 8 6.3404 -4.9248 2.3533 18 6 8.1360 -3.2906 -1.0329 19 6 7.7180 -3.9304 -2.3584 20 6 8.1925 -5.3845 -2.3948 21 6 7.5609 -6.1562 -1.2344 22 6 7.9789 -5.5165 0.0910 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6804 -0.8889 25 1 3.8745 -0.6800 0.8911 26 1 3.6580 -3.1497 0.8925 27 1 3.6586 -3.1510 -0.8874 28 1 5.9149 -2.1234 -0.8881 29 1 5.9149 -2.1219 0.8919 30 1 5.7341 -4.5146 -0.8209 31 1 8.9975 -3.5396 1.5899 32 1 7.6712 -2.3621 1.4397 33 1 8.1783 -3.1179 4.0504 34 1 7.0271 -4.2145 4.5933 35 1 7.7980 -2.2546 -1.0069 36 1 9.2217 -3.3205 -0.9410 37 1 8.1675 -3.3803 -3.1850 38 1 6.6323 -3.9001 -2.4500 39 1 9.2782 -5.4148 -2.3031 40 1 7.8942 -5.8403 -3.3389 41 1 7.8986 -7.1923 -1.2606 42 1 6.4752 -6.1259 -1.3261 43 1 9.0647 -5.5468 0.1827 44 1 7.5293 -6.0666 0.9177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934822902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:01 Heat of formation + Delta-G solvation = -61.875588 kcal Electronic energy + Delta-G solvation = -21768.027500 eV Core-core repulsion = 18719.047877 eV Total energy + Delta-G solvation = -3048.979623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41993 -38.35068 -35.16726 -33.44928 -33.33785 -31.94628 -30.82685 -29.95190 -27.42340 -25.98304 -22.97567 -22.25950 -21.66971 -20.15959 -19.94830 -18.55539 -17.11718 -16.78202 -16.55736 -15.82806 -15.31845 -14.82443 -14.59734 -14.28538 -14.08171 -13.90357 -13.36090 -13.28947 -12.65045 -12.45908 -12.15900 -12.12534 -12.04600 -11.83732 -11.54412 -11.44104 -11.12661 -10.87042 -10.71385 -10.44982 -10.30968 -10.05619 -9.84718 -9.64758 -9.52504 -9.45513 -9.41430 -9.09102 -8.47535 -7.81417 -5.97684 -3.94575 2.94383 3.33319 3.40222 3.44243 3.64309 4.42533 4.50173 4.56708 4.66067 4.79161 5.02508 5.09891 5.14248 5.29284 5.36105 5.38927 5.47040 5.49825 5.55615 5.62851 5.71365 5.78809 5.86686 5.92986 5.99843 6.07044 6.12403 6.23877 6.34084 6.37080 6.45167 6.69874 6.75059 6.92244 7.03506 7.41599 7.46507 7.52507 7.57931 7.82458 7.88405 8.54523 8.63476 9.09190 9.65195 11.16165 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019028 B = 0.004999 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.184043 B = 5599.703918 C = 6283.763473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.096 4.096 11 C 0.054 3.946 12 N -0.655 5.655 13 C 0.134 3.866 14 C -0.133 4.133 15 C 0.513 3.487 16 N -0.870 5.870 17 O -0.494 6.494 18 C -0.150 4.150 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.109 4.109 23 H 0.262 0.738 24 H 0.007 0.993 25 H 0.012 0.988 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.023 0.977 29 H 0.059 0.941 30 H 0.338 0.662 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.394 0.606 34 H 0.397 0.603 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.092 -8.332 1.303 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.134 4.134 11 C -0.074 4.074 12 N -0.287 5.287 13 C 0.042 3.958 14 C -0.174 4.174 15 C 0.297 3.703 16 N -0.436 5.436 17 O -0.366 6.366 18 C -0.190 4.190 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.146 4.146 23 H 0.071 0.929 24 H 0.025 0.975 25 H 0.031 0.969 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.159 0.841 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.221 0.779 34 H 0.227 0.773 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 22.268 -8.847 1.603 24.015 hybrid contribution 0.815 1.635 -0.468 1.886 sum 23.084 -7.212 1.135 24.211 Atomic orbital electron populations 1.69925 1.06279 1.26711 1.51625 1.25045 0.94715 0.99095 0.94780 0.86770 0.80329 0.83739 0.78366 1.20412 1.21462 1.19137 1.21185 0.89631 0.94432 1.50103 0.91029 1.19537 0.97078 0.92569 0.95776 1.21380 0.91370 0.99101 1.01535 1.22171 0.97529 0.88633 0.99110 1.60689 1.07285 1.14978 1.45779 1.20557 0.89178 0.94729 0.91328 1.21812 1.00308 1.01423 0.93862 1.20417 0.83329 0.82943 0.83659 1.44006 1.44417 1.47011 1.08126 1.90800 1.30320 1.31902 1.83576 1.22285 1.00790 1.00240 0.95673 1.21515 1.01456 0.95862 0.97024 1.21557 1.00182 0.95429 0.98475 1.21533 1.01278 0.98658 0.94368 1.21644 0.99411 0.94877 0.98691 0.92861 0.97458 0.96939 0.91991 0.93283 0.95906 0.92218 0.84131 0.89497 0.88905 0.77874 0.77297 0.91466 0.91910 0.92083 0.91750 0.92334 0.92240 0.92222 0.91268 0.92674 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.80 13.96 55.43 0.77 -28.03 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.52 -15.36 9.66 -34.44 -0.33 -15.69 16 8 H 0.07 2.30 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 10 C -0.10 -2.04 5.46 -26.73 -0.15 -2.19 16 11 C 0.05 0.92 4.85 -3.82 -0.02 0.90 16 12 N -0.66 -9.82 4.17 -99.96 -0.42 -10.24 16 13 C 0.13 1.58 0.28 -131.60 -0.04 1.55 16 14 C -0.13 -1.42 4.25 -27.89 -0.12 -1.53 16 15 C 0.51 6.52 7.57 -10.99 -0.08 6.44 16 16 N -0.87 -7.82 8.87 31.22 0.28 -7.54 16 17 O -0.49 -8.44 14.01 5.55 0.08 -8.36 16 18 C -0.15 -1.59 4.31 -26.73 -0.12 -1.70 16 19 C -0.12 -1.26 5.66 -26.73 -0.15 -1.42 16 20 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 21 C -0.12 -1.26 5.66 -26.73 -0.15 -1.41 16 22 C -0.11 -1.21 4.67 -26.73 -0.12 -1.33 16 23 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 24 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 25 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 26 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.02 0.37 6.57 -51.93 -0.34 0.03 16 29 H 0.06 1.01 6.20 -51.92 -0.32 0.69 16 30 H 0.34 5.03 5.25 -39.29 -0.21 4.83 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.99 6.62 -51.93 -0.34 0.64 16 33 H 0.39 2.29 8.83 -40.82 -0.36 1.93 16 34 H 0.40 3.40 8.93 -40.82 -0.36 3.04 16 35 H 0.07 0.77 6.50 -51.93 -0.34 0.44 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.77 6.80 -51.93 -0.35 0.41 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.81 6.54 -51.93 -0.34 0.47 16 43 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 44 H 0.08 1.13 6.22 -51.93 -0.32 0.81 16 LS Contribution 329.84 15.07 4.97 4.97 Total: -1.00 -34.18 329.84 -8.08 -42.26 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.45 Total: 5.54 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -1.65 Total: -16.24 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.63 Total: -45.81 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.08 Total: -8.36 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.18 -8.08 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934822902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.612 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds