Wall clock time and date at job start Mon Mar 30 2020 01:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99880 * 2 1 4 4 H 1.48498 * 109.47182 * 269.99671 * 3 2 1 5 5 H 1.48496 * 109.47260 * 29.99700 * 3 2 1 6 6 H 1.48507 * 109.47262 * 149.99974 * 3 2 1 7 7 C 1.37878 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99805 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99940 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46974 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46673 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.46893 * 179.97438 * 11 10 9 13 13 C 1.46902 * 111.00100 * 185.16903 * 12 11 10 14 14 C 1.52993 * 109.47132 * 61.38217 * 13 12 11 15 15 C 1.50692 * 109.47433 * 54.51351 * 14 13 12 16 16 N 1.34776 * 120.00101 * 174.03745 * 15 14 13 17 17 O 1.21284 * 120.00468 * 354.04129 * 15 14 13 18 18 C 1.53003 * 109.46901 * 301.37750 * 13 12 11 19 19 C 1.53001 * 109.47207 * 300.00349 * 18 13 12 20 20 C 1.52999 * 109.47051 * 299.99727 * 19 18 13 21 21 C 1.53003 * 109.46892 * 60.00081 * 20 19 18 22 22 C 1.52993 * 109.47609 * 299.99998 * 21 20 19 23 23 H 0.97000 * 120.00072 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46719 * 299.99901 * 9 7 2 25 25 H 1.08996 * 109.47171 * 59.99635 * 9 7 2 26 26 H 1.08995 * 109.47060 * 299.99378 * 10 9 7 27 27 H 1.08996 * 109.47350 * 59.99891 * 10 9 7 28 28 H 1.08996 * 109.47756 * 299.99697 * 11 10 9 29 29 H 1.09008 * 109.47151 * 60.00471 * 11 10 9 30 30 H 1.00894 * 110.99821 * 61.20980 * 12 11 10 31 31 H 1.09004 * 109.47238 * 174.51766 * 14 13 12 32 32 H 1.09002 * 109.47023 * 294.51483 * 14 13 12 33 33 H 0.97002 * 120.00246 * 0.02562 * 16 15 14 34 34 H 0.97006 * 120.00478 * 180.02562 * 16 15 14 35 35 H 1.09007 * 109.46819 * 60.00045 * 18 13 12 36 36 H 1.08999 * 109.46962 * 179.97438 * 18 13 12 37 37 H 1.08996 * 109.46877 * 179.97438 * 19 18 13 38 38 H 1.09000 * 109.47101 * 59.99654 * 19 18 13 39 39 H 1.08999 * 109.47037 * 300.00470 * 20 19 18 40 40 H 1.08993 * 109.46919 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.46979 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.46962 * 60.00343 * 21 20 19 43 43 H 1.09010 * 109.46793 * 300.00272 * 22 21 20 44 44 H 1.08996 * 109.47280 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5516 -2.6364 0.0022 12 7 6.0413 -4.0214 0.0040 13 6 7.5045 -4.0623 0.1275 14 6 7.9225 -3.4226 1.4530 15 6 7.1953 -4.0969 2.5876 16 7 7.4949 -3.7802 3.8629 17 8 6.3404 -4.9248 2.3533 18 6 8.1360 -3.2906 -1.0329 19 6 7.7180 -3.9304 -2.3584 20 6 8.1925 -5.3845 -2.3948 21 6 7.5609 -6.1562 -1.2344 22 6 7.9789 -5.5165 0.0910 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6804 -0.8889 25 1 3.8745 -0.6800 0.8911 26 1 3.6580 -3.1497 0.8925 27 1 3.6586 -3.1510 -0.8874 28 1 5.9149 -2.1234 -0.8881 29 1 5.9149 -2.1219 0.8919 30 1 5.7341 -4.5146 -0.8209 31 1 8.9975 -3.5396 1.5899 32 1 7.6712 -2.3621 1.4397 33 1 8.1783 -3.1179 4.0504 34 1 7.0271 -4.2145 4.5933 35 1 7.7980 -2.2546 -1.0069 36 1 9.2217 -3.3205 -0.9410 37 1 8.1675 -3.3803 -3.1850 38 1 6.6323 -3.9001 -2.4500 39 1 9.2782 -5.4148 -2.3031 40 1 7.8942 -5.8403 -3.3389 41 1 7.8986 -7.1923 -1.2606 42 1 6.4752 -6.1259 -1.3261 43 1 9.0647 -5.5468 0.1827 44 1 7.5293 -6.0666 0.9177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934822902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:01 Heat of formation + Delta-G solvation = -87.108281 kcal Electronic energy + Delta-G solvation = -21769.121671 eV Core-core repulsion = 18719.047877 eV Total energy + Delta-G solvation = -3050.073795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35717 -39.30592 -36.66427 -35.00619 -34.35855 -33.58483 -31.78991 -31.28632 -28.51265 -27.55084 -24.24255 -23.47582 -22.66738 -21.78544 -20.98057 -19.49323 -18.90904 -17.93537 -17.61561 -16.92428 -16.38221 -16.22804 -15.91327 -15.52480 -15.24583 -15.07667 -14.74494 -14.44993 -14.25203 -13.71548 -13.60693 -13.23601 -12.98268 -12.93877 -12.77354 -12.62400 -12.60896 -12.19933 -11.99260 -11.79489 -11.53773 -11.45157 -11.36122 -11.16806 -11.10902 -10.85053 -10.77209 -10.55044 -10.31038 -8.92706 -8.30028 -6.34913 1.34160 1.37386 1.49769 2.01059 2.36078 2.84083 3.04720 3.35848 3.72716 3.84041 3.95787 4.18710 4.25212 4.28106 4.34848 4.41367 4.50527 4.61631 4.67323 4.70583 4.73168 4.80157 4.85657 4.90097 4.91759 4.99487 5.07114 5.18394 5.20153 5.27147 5.32230 5.44825 5.50169 5.57351 5.59294 5.63367 5.66425 6.14016 6.27615 6.42297 6.62186 6.73418 6.76681 7.29424 7.69294 8.87531 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019028 B = 0.004999 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.184043 B = 5599.703918 C = 6283.763473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.244 1.244 7 C -0.536 4.536 8 H 0.023 0.977 9 C -0.005 4.005 10 C -0.087 4.087 11 C 0.072 3.928 12 N -0.668 5.668 13 C 0.131 3.869 14 C -0.133 4.133 15 C 0.505 3.495 16 N -0.855 5.855 17 O -0.549 6.549 18 C -0.144 4.144 19 C -0.123 4.123 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.103 4.103 23 H 0.267 0.733 24 H 0.021 0.979 25 H 0.018 0.982 26 H 0.033 0.967 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.064 0.936 30 H 0.335 0.665 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.412 0.588 34 H 0.399 0.601 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.997 -6.724 1.147 27.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.781 3.219 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.167 1.167 7 C -0.574 4.574 8 H 0.041 0.959 9 C -0.043 4.043 10 C -0.125 4.125 11 C -0.057 4.057 12 N -0.300 5.300 13 C 0.039 3.961 14 C -0.173 4.173 15 C 0.290 3.710 16 N -0.420 5.420 17 O -0.425 6.425 18 C -0.184 4.184 19 C -0.160 4.160 20 C -0.149 4.149 21 C -0.159 4.159 22 C -0.140 4.140 23 H 0.075 0.925 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.155 0.845 31 H 0.142 0.858 32 H 0.115 0.885 33 H 0.242 0.758 34 H 0.229 0.771 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.098 0.902 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 26.223 -7.234 1.475 27.242 hybrid contribution -0.477 1.014 -0.374 1.181 sum 25.746 -6.220 1.101 26.510 Atomic orbital electron populations 1.70094 1.08493 1.28245 1.52707 1.26127 0.95706 1.03856 0.93912 0.85546 0.79464 0.77556 0.79380 1.18836 1.20806 1.16741 1.21526 0.92426 0.92928 1.50548 0.95906 1.19452 0.93641 0.94841 0.96353 1.21206 0.95011 0.96592 0.99675 1.21859 0.93798 0.90238 0.99826 1.60624 1.10059 1.13492 1.45852 1.20710 0.86972 0.95644 0.92742 1.21884 1.02237 1.00994 0.92165 1.20897 0.82778 0.82340 0.85020 1.43880 1.44239 1.46704 1.07190 1.90791 1.32776 1.34419 1.84509 1.22229 1.02117 0.99315 0.94693 1.21531 1.00199 0.96760 0.97558 1.21507 1.00981 0.94478 0.97970 1.21521 1.00043 0.99474 0.94824 1.21577 1.00534 0.94091 0.97843 0.92458 0.96073 0.96329 0.94781 0.94334 0.94716 0.91725 0.84504 0.85754 0.88478 0.75757 0.77068 0.92136 0.89398 0.91044 0.93938 0.90597 0.91898 0.91393 0.93500 0.90236 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.33 13.96 21.45 0.30 -62.03 16 2 C 0.00 0.01 5.47 84.65 0.46 0.47 16 3 Si 0.96 45.36 27.47 68.60 1.88 47.24 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.24 -10.60 6.54 99.48 0.65 -9.95 16 7 C -0.54 -33.03 9.66 25.60 0.25 -32.78 16 8 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 9 C 0.00 -0.25 4.04 29.85 0.12 -0.13 16 10 C -0.09 -3.79 5.46 30.59 0.17 -3.62 16 11 C 0.07 2.38 4.85 86.30 0.42 2.80 16 12 N -0.67 -19.91 4.17 -470.16 -1.96 -21.86 16 13 C 0.13 2.82 0.28 3.53 0.00 2.82 16 14 C -0.13 -2.42 4.25 29.84 0.13 -2.30 16 15 C 0.50 12.16 7.57 87.65 0.66 12.82 16 16 N -0.85 -13.77 8.87 -173.54 -1.54 -15.31 16 17 O -0.55 -18.97 14.01 -3.04 -0.04 -19.01 16 18 C -0.14 -2.58 4.31 30.60 0.13 -2.44 16 19 C -0.12 -2.29 5.66 30.59 0.17 -2.12 16 20 C -0.11 -1.84 5.92 30.60 0.18 -1.65 16 21 C -0.12 -2.39 5.66 30.59 0.17 -2.21 16 22 C -0.10 -2.11 4.67 30.59 0.14 -1.97 16 23 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 24 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 25 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 26 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.03 1.07 6.57 -2.39 -0.02 1.06 16 29 H 0.06 2.08 6.20 -2.38 -0.01 2.06 16 30 H 0.33 10.20 5.25 -89.70 -0.47 9.73 16 31 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.10 1.73 6.62 -2.39 -0.02 1.72 16 33 H 0.41 3.60 8.83 -92.71 -0.82 2.78 16 34 H 0.40 6.37 8.93 -92.70 -0.83 5.55 16 35 H 0.06 1.18 6.50 -2.38 -0.02 1.17 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.04 0.98 6.80 -2.39 -0.02 0.96 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 1.13 6.54 -2.39 -0.02 1.11 16 43 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.06 1.53 6.22 -2.39 -0.01 1.52 16 Total: -1.00 -77.48 329.84 0.49 -76.99 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -1.17 Total: 24.29 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 3.01 Total: -30.31 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -3.20 Total: -99.21 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.04 Total: -19.01 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -77.48 0.49 -76.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934822902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.118 kcal (2) G-P(sol) polarization free energy of solvation -77.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds