Wall clock time and date at job start Mon Mar 30 2020 00:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47158 * 2 1 4 4 C 1.52999 * 109.47157 * 240.00108 * 2 1 3 5 5 O 1.42903 * 109.47256 * 65.00201 * 4 2 1 6 6 C 1.50697 * 109.47366 * 119.99928 * 2 1 3 7 7 N 1.30297 * 126.34330 * 60.03069 * 6 2 1 8 8 N 1.28524 * 110.05523 * 179.97438 * 7 6 2 9 9 C 1.31222 * 109.85972 * 359.97438 * 8 7 6 10 10 N 1.38581 * 126.47579 * 180.02562 * 9 8 7 11 11 C 1.46907 * 110.99396 * 236.06961 * 10 9 8 12 12 C 1.46900 * 110.99921 * 0.02562 * 10 9 8 13 13 H 1.08999 * 109.47158 * 300.00473 * 12 10 9 14 14 C 1.53002 * 109.46859 * 60.00759 * 12 10 9 15 15 C 1.50696 * 109.46922 * 180.02562 * 12 10 9 16 16 H 1.07999 * 120.00453 * 0.02562 * 15 12 10 17 17 C 1.37881 * 120.00051 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99765 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 120.00236 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47128 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47193 * 120.00118 * 19 17 15 22 22 H 1.48501 * 109.47283 * 240.00292 * 19 17 15 23 23 N 1.36460 * 107.04982 * 359.75902 * 9 8 7 24 24 C 1.46493 * 127.13509 * 180.24484 * 23 9 8 25 25 H 1.08996 * 109.47473 * 60.00361 * 1 2 3 26 26 H 1.09001 * 109.46943 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47294 * 299.99780 * 1 2 3 28 28 H 1.08997 * 109.47286 * 304.99761 * 4 2 1 29 29 H 1.09008 * 109.47201 * 184.99542 * 4 2 1 30 30 H 0.96700 * 114.00311 * 180.02562 * 5 4 2 31 31 H 1.08994 * 109.47608 * 59.99904 * 11 10 9 32 32 H 1.09003 * 109.46661 * 180.02562 * 11 10 9 33 33 H 1.08999 * 109.46865 * 299.99112 * 11 10 9 34 34 H 1.09001 * 109.47165 * 179.97438 * 14 12 10 35 35 H 1.09001 * 109.46860 * 299.99844 * 14 12 10 36 36 H 1.08998 * 109.47254 * 59.99398 * 14 12 10 37 37 H 0.97003 * 120.00016 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.47502 * 270.16384 * 24 23 9 39 39 H 1.09002 * 109.47186 * 30.15910 * 24 23 9 40 40 H 1.09000 * 109.47162 * 150.15914 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.6620 0.0168 -2.4131 6 6 2.0324 -0.7104 1.2304 7 7 1.7955 -1.9491 1.5577 8 7 2.3770 -2.2304 2.6688 9 6 3.0218 -1.1775 3.1135 10 7 3.7653 -1.0989 4.2803 11 6 3.2830 -0.0090 5.1392 12 6 3.7541 -2.3800 4.9990 13 1 2.7281 -2.6439 5.2554 14 6 4.3536 -3.4698 4.1080 15 6 4.5704 -2.2559 6.2596 16 1 5.0492 -1.3189 6.5029 17 6 4.7059 -3.3386 7.1026 18 7 4.1233 -4.4797 6.8062 19 14 5.7172 -3.1845 8.6656 20 1 6.2643 -1.8078 8.7675 21 1 4.8554 -3.4636 9.8422 22 1 6.8363 -4.1599 8.6292 23 7 2.8269 -0.1765 2.2068 24 6 3.3561 1.1881 2.2686 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6054 -1.7198 -1.2952 29 1 3.1264 -0.7994 -1.2056 30 1 1.9526 -0.3832 -3.2441 31 1 2.2400 -0.1868 5.4008 32 1 3.8841 0.0307 6.0477 33 1 3.3677 0.9381 4.6064 34 1 4.3457 -4.4204 4.6414 35 1 3.7628 -3.5595 3.1963 36 1 5.3795 -3.2059 3.8516 37 1 4.2189 -5.2415 7.3990 38 1 2.6509 1.8276 2.7996 39 1 4.3105 1.1842 2.7951 40 1 3.5006 1.5679 1.2572 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121298845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:19 Heat of formation + Delta-G solvation = 46.152669 kcal Electronic energy + Delta-G solvation = -21380.880820 eV Core-core repulsion = 18233.045310 eV Total energy + Delta-G solvation = -3147.835510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.53304 -37.68535 -37.01671 -34.80909 -33.85092 -32.66810 -29.24806 -28.79027 -27.46369 -26.44472 -25.37118 -24.29128 -22.97472 -21.61335 -20.02724 -19.18340 -17.72722 -16.75876 -16.18119 -16.00169 -15.49543 -15.07054 -14.61793 -14.38192 -14.21178 -13.95360 -13.38208 -13.05461 -12.91302 -12.68793 -12.37123 -12.10414 -11.90568 -11.53766 -11.21863 -11.03509 -10.99044 -10.85916 -10.53498 -10.43132 -10.19919 -10.12271 -10.05926 -9.85581 -9.57447 -9.34831 -8.63516 -8.45961 -7.36427 -6.05551 -4.13732 2.20069 2.63151 3.26445 3.34283 3.36813 3.37096 4.00832 4.30973 4.51057 4.60562 4.75557 4.78927 5.01628 5.11578 5.18879 5.26042 5.39160 5.50020 5.53748 5.61163 5.73904 5.79556 5.96565 5.99613 6.11108 6.29072 6.34044 6.46284 6.88782 7.00672 7.18837 7.37813 7.41160 7.44979 7.69695 7.72838 7.97173 8.27984 8.43527 8.87932 9.36322 9.51011 11.00522 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040268 B = 0.004481 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.177886 B = 6247.498095 C = 6567.607417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.012 3.988 3 H 0.086 0.914 4 C 0.087 3.913 5 O -0.574 6.574 6 C 0.145 3.855 7 N -0.278 5.278 8 N -0.315 5.315 9 C 0.388 3.612 10 N -0.454 5.454 11 C 0.033 3.967 12 C 0.230 3.770 13 H 0.021 0.979 14 C -0.143 4.143 15 C -0.519 4.519 16 H 0.065 0.935 17 C 0.064 3.936 18 N -0.882 5.882 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 N -0.492 5.492 24 C 0.078 3.922 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.382 0.618 31 H 0.029 0.971 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 11.978 -12.711 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.010 4.010 3 H 0.104 0.896 4 C 0.009 3.991 5 O -0.380 6.380 6 C -0.123 4.123 7 N -0.117 5.117 8 N -0.160 5.160 9 C 0.032 3.968 10 N -0.178 5.178 11 C -0.115 4.115 12 C 0.126 3.874 13 H 0.039 0.961 14 C -0.202 4.202 15 C -0.557 4.557 16 H 0.083 0.917 17 C -0.139 4.139 18 N -0.520 5.520 19 Si 0.728 3.272 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 N -0.189 5.189 24 C -0.065 4.065 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.229 0.771 31 H 0.048 0.952 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.488 10.870 -12.304 16.784 hybrid contribution 0.871 0.849 0.841 1.479 sum -2.618 11.719 -11.464 16.601 Atomic orbital electron populations 1.21721 0.92471 1.03253 1.01876 1.19199 0.97194 0.97788 0.86777 0.89585 1.22102 0.98126 0.94637 0.84272 1.86385 1.81731 1.53451 1.16404 1.24073 1.00069 0.93087 0.95059 1.73904 1.18642 1.10307 1.08876 1.74855 1.12492 1.21670 1.06964 1.23323 0.94856 0.84791 0.93805 1.59095 1.44425 1.11693 1.02542 1.22439 0.99373 0.91507 0.98143 1.19379 0.97049 0.80164 0.90790 0.96124 1.21973 0.97808 1.01596 0.98775 1.21101 1.32164 0.98063 1.04393 0.91695 1.24902 0.95672 0.95097 0.98185 1.69941 1.43146 1.01730 1.37155 0.86420 0.79890 0.78160 0.82781 1.19754 1.21001 1.20907 1.46044 1.41402 1.12444 1.19029 1.22025 1.00813 0.79827 1.03847 0.91210 0.91416 0.92776 0.92007 0.93614 0.77139 0.95236 0.88290 0.93153 0.89491 0.93593 0.95856 0.92767 0.90760 0.88696 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.07 37.16 0.34 -1.22 16 2 C 0.01 0.14 2.99 -91.77 -0.27 -0.13 16 3 H 0.09 0.91 6.95 -51.93 -0.36 0.55 16 4 C 0.09 0.97 6.41 37.16 0.24 1.21 16 5 O -0.57 -5.45 13.20 -35.23 -0.46 -5.92 16 6 C 0.14 2.39 6.58 -154.02 -1.01 1.37 16 7 N -0.28 -5.68 12.18 32.99 0.40 -5.28 16 8 N -0.31 -7.33 9.01 30.32 0.27 -7.05 16 9 C 0.39 8.17 6.75 -318.86 -2.15 6.02 16 10 N -0.45 -9.94 4.69 -176.07 -0.83 -10.77 16 11 C 0.03 0.60 9.09 60.07 0.55 1.15 16 12 C 0.23 5.97 1.73 -68.87 -0.12 5.85 16 13 H 0.02 0.61 8.11 -51.93 -0.42 0.19 16 14 C -0.14 -3.79 8.77 37.16 0.33 -3.46 16 15 C -0.52 -13.90 7.88 -34.44 -0.27 -14.17 16 16 H 0.06 1.68 6.40 -52.49 -0.34 1.34 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -25.25 11.32 55.43 0.63 -24.63 16 19 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 N -0.49 -8.18 3.21 -121.46 -0.39 -8.57 16 24 C 0.08 0.88 9.20 59.84 0.55 1.44 16 25 H 0.07 0.71 7.82 -51.93 -0.41 0.30 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.38 1.93 9.12 45.56 0.42 2.35 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.10 1.86 6.10 -51.93 -0.32 1.55 16 33 H 0.05 0.73 5.44 -51.93 -0.28 0.44 16 34 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 35 H 0.05 1.20 5.43 -51.93 -0.28 0.91 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.07 0.70 7.85 -51.93 -0.41 0.30 16 39 H 0.09 1.08 7.60 -51.93 -0.39 0.69 16 40 H 0.08 0.73 7.23 -51.93 -0.38 0.35 16 LS Contribution 319.50 15.07 4.81 4.81 Total: -1.00 -33.03 319.50 -7.66 -40.70 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.15 Total: 1.16 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.93 Total: -0.29 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.09 Total: -56.29 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.46 Total: -5.92 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.03 -7.66 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121298845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.848 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds