Wall clock time and date at job start Mon Mar 30 2020 00:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47158 * 2 1 4 4 C 1.52999 * 109.47157 * 240.00108 * 2 1 3 5 5 O 1.42903 * 109.47256 * 65.00201 * 4 2 1 6 6 C 1.50697 * 109.47366 * 119.99928 * 2 1 3 7 7 N 1.30297 * 126.34330 * 60.03069 * 6 2 1 8 8 N 1.28524 * 110.05523 * 179.97438 * 7 6 2 9 9 C 1.31222 * 109.85972 * 359.97438 * 8 7 6 10 10 N 1.38581 * 126.47579 * 180.02562 * 9 8 7 11 11 C 1.46907 * 110.99396 * 236.06961 * 10 9 8 12 12 C 1.46900 * 110.99921 * 0.02562 * 10 9 8 13 13 H 1.08999 * 109.47158 * 300.00473 * 12 10 9 14 14 C 1.53002 * 109.46859 * 60.00759 * 12 10 9 15 15 C 1.50696 * 109.46922 * 180.02562 * 12 10 9 16 16 H 1.07999 * 120.00453 * 0.02562 * 15 12 10 17 17 C 1.37881 * 120.00051 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99765 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 120.00236 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47128 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47193 * 120.00118 * 19 17 15 22 22 H 1.48501 * 109.47283 * 240.00292 * 19 17 15 23 23 N 1.36460 * 107.04982 * 359.75902 * 9 8 7 24 24 C 1.46493 * 127.13509 * 180.24484 * 23 9 8 25 25 H 1.08996 * 109.47473 * 60.00361 * 1 2 3 26 26 H 1.09001 * 109.46943 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47294 * 299.99780 * 1 2 3 28 28 H 1.08997 * 109.47286 * 304.99761 * 4 2 1 29 29 H 1.09008 * 109.47201 * 184.99542 * 4 2 1 30 30 H 0.96700 * 114.00311 * 180.02562 * 5 4 2 31 31 H 1.08994 * 109.47608 * 59.99904 * 11 10 9 32 32 H 1.09003 * 109.46661 * 180.02562 * 11 10 9 33 33 H 1.08999 * 109.46865 * 299.99112 * 11 10 9 34 34 H 1.09001 * 109.47165 * 179.97438 * 14 12 10 35 35 H 1.09001 * 109.46860 * 299.99844 * 14 12 10 36 36 H 1.08998 * 109.47254 * 59.99398 * 14 12 10 37 37 H 0.97003 * 120.00016 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.47502 * 270.16384 * 24 23 9 39 39 H 1.09002 * 109.47186 * 30.15910 * 24 23 9 40 40 H 1.09000 * 109.47162 * 150.15914 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.6620 0.0168 -2.4131 6 6 2.0324 -0.7104 1.2304 7 7 1.7955 -1.9491 1.5577 8 7 2.3770 -2.2304 2.6688 9 6 3.0218 -1.1775 3.1135 10 7 3.7653 -1.0989 4.2803 11 6 3.2830 -0.0090 5.1392 12 6 3.7541 -2.3800 4.9990 13 1 2.7281 -2.6439 5.2554 14 6 4.3536 -3.4698 4.1080 15 6 4.5704 -2.2559 6.2596 16 1 5.0492 -1.3189 6.5029 17 6 4.7059 -3.3386 7.1026 18 7 4.1233 -4.4797 6.8062 19 14 5.7172 -3.1845 8.6656 20 1 6.2643 -1.8078 8.7675 21 1 4.8554 -3.4636 9.8422 22 1 6.8363 -4.1599 8.6292 23 7 2.8269 -0.1765 2.2068 24 6 3.3561 1.1881 2.2686 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6054 -1.7198 -1.2952 29 1 3.1264 -0.7994 -1.2056 30 1 1.9526 -0.3832 -3.2441 31 1 2.2400 -0.1868 5.4008 32 1 3.8841 0.0307 6.0477 33 1 3.3677 0.9381 4.6064 34 1 4.3457 -4.4204 4.6414 35 1 3.7628 -3.5595 3.1963 36 1 5.3795 -3.2059 3.8516 37 1 4.2189 -5.2415 7.3990 38 1 2.6509 1.8276 2.7996 39 1 4.3105 1.1842 2.7951 40 1 3.5006 1.5679 1.2572 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121298845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:19 Heat of formation + Delta-G solvation = 22.936675 kcal Electronic energy + Delta-G solvation = -21381.887541 eV Core-core repulsion = 18233.045310 eV Total energy + Delta-G solvation = -3148.842231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.98589 -39.05687 -38.22270 -36.11847 -35.14999 -34.37187 -31.20975 -30.28015 -28.58478 -27.45929 -27.18442 -25.98512 -24.24695 -23.31778 -21.46923 -20.62007 -18.62100 -18.52024 -17.58554 -17.51487 -17.01639 -16.53657 -15.95734 -15.68207 -15.58847 -15.07913 -14.85824 -14.55254 -14.18194 -13.85860 -13.60854 -13.55562 -13.12599 -12.97091 -12.84485 -12.69732 -12.52263 -12.23775 -12.17797 -12.07233 -12.03061 -11.88830 -11.48828 -11.06610 -10.97360 -10.91566 -10.57267 -10.46987 -9.04290 -8.13307 -6.29339 0.81763 1.31712 1.44680 1.46028 1.57951 1.86696 2.41172 2.92574 3.13062 3.18769 3.50696 3.79189 3.84125 4.08300 4.14243 4.23527 4.30585 4.34725 4.46309 4.56457 4.61666 4.66916 4.75529 4.82678 4.86298 4.96217 4.97510 5.11592 5.15747 5.27117 5.35639 5.41123 5.56394 5.65100 5.94042 6.00105 6.16167 6.56892 6.80757 6.86877 7.39737 7.86834 8.93624 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040268 B = 0.004481 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.177886 B = 6247.498095 C = 6567.607417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.011 3.989 3 H 0.115 0.885 4 C 0.096 3.904 5 O -0.576 6.576 6 C 0.173 3.827 7 N -0.320 5.320 8 N -0.365 5.365 9 C 0.367 3.633 10 N -0.455 5.455 11 C 0.034 3.966 12 C 0.242 3.758 13 H -0.025 1.025 14 C -0.128 4.128 15 C -0.528 4.528 16 H 0.076 0.924 17 C 0.012 3.988 18 N -0.919 5.919 19 Si 0.971 3.029 20 H -0.258 1.258 21 H -0.282 1.282 22 H -0.283 1.283 23 N -0.483 5.483 24 C 0.064 3.936 25 H 0.089 0.911 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.402 0.598 31 H 0.015 0.985 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 15.090 -13.600 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.010 4.010 3 H 0.133 0.867 4 C 0.017 3.983 5 O -0.385 6.385 6 C -0.096 4.096 7 N -0.158 5.158 8 N -0.210 5.210 9 C 0.009 3.991 10 N -0.178 5.178 11 C -0.113 4.113 12 C 0.136 3.864 13 H -0.008 1.008 14 C -0.186 4.186 15 C -0.567 4.567 16 H 0.094 0.906 17 C -0.188 4.188 18 N -0.558 5.558 19 Si 0.796 3.204 20 H -0.181 1.181 21 H -0.207 1.207 22 H -0.209 1.209 23 N -0.179 5.179 24 C -0.077 4.077 25 H 0.108 0.892 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.252 0.748 31 H 0.034 0.966 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.811 14.025 -13.234 19.487 hybrid contribution 0.571 -0.028 0.945 1.104 sum -2.241 13.997 -12.289 18.761 Atomic orbital electron populations 1.21681 0.91832 1.02444 1.02860 1.19470 0.97599 0.98765 0.85172 0.86660 1.21855 0.97880 0.93979 0.84633 1.86329 1.81847 1.53391 1.16908 1.24914 0.97443 0.92045 0.95227 1.73812 1.20379 1.12830 1.08805 1.74691 1.13967 1.23855 1.08472 1.23170 0.95684 0.86013 0.94197 1.59007 1.45453 1.10442 1.02940 1.22535 0.98219 0.92341 0.98192 1.18961 0.94135 0.82161 0.91103 1.00781 1.21770 0.97541 1.00796 0.98508 1.21410 1.31994 0.98515 1.04739 0.90642 1.25824 0.96730 0.94646 1.01587 1.70101 1.44597 1.02579 1.38486 0.85307 0.78030 0.78709 0.78363 1.18137 1.20749 1.20868 1.46274 1.40602 1.13505 1.17564 1.22517 1.01356 0.77156 1.06689 0.89234 0.93187 0.92707 0.93289 0.93619 0.74753 0.96584 0.88840 0.88636 0.92114 0.93727 0.96088 0.92787 0.88225 0.88544 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.07 71.98 0.65 -2.05 16 2 C 0.01 0.23 2.99 -11.54 -0.03 0.20 16 3 H 0.12 1.88 6.95 -2.39 -0.02 1.86 16 4 C 0.10 1.91 6.41 71.98 0.46 2.37 16 5 O -0.58 -9.02 13.20 -148.98 -1.97 -10.98 16 6 C 0.17 5.47 6.58 137.64 0.91 6.37 16 7 N -0.32 -13.30 12.18 -49.54 -0.60 -13.90 16 8 N -0.37 -17.60 9.01 -58.00 -0.52 -18.12 16 9 C 0.37 15.53 6.75 260.11 1.76 17.28 16 10 N -0.45 -20.04 4.69 -710.98 -3.33 -23.37 16 11 C 0.03 1.21 9.09 127.69 1.16 2.37 16 12 C 0.24 13.04 1.73 44.17 0.08 13.11 16 13 H -0.03 -1.58 8.11 -2.39 -0.02 -1.60 16 14 C -0.13 -7.07 8.77 71.98 0.63 -6.44 16 15 C -0.53 -28.70 7.88 25.60 0.20 -28.50 16 16 H 0.08 3.86 6.40 -2.91 -0.02 3.84 16 17 C 0.01 0.64 5.30 84.66 0.45 1.09 16 18 N -0.92 -54.39 11.32 21.45 0.24 -54.15 16 19 Si 0.97 42.88 29.54 68.60 2.03 44.90 16 20 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 N -0.48 -15.15 3.21 -538.19 -1.73 -16.87 16 24 C 0.06 1.18 9.20 127.77 1.18 2.35 16 25 H 0.09 1.53 7.82 -2.39 -0.02 1.51 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.40 2.80 9.12 -74.06 -0.68 2.13 16 31 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 3.43 6.10 -2.39 -0.01 3.42 16 33 H 0.10 2.49 5.44 -2.39 -0.01 2.48 16 34 H 0.06 3.64 6.07 -2.39 -0.01 3.63 16 35 H 0.04 2.45 5.43 -2.39 -0.01 2.44 16 36 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.26 14.71 8.31 -92.71 -0.77 13.93 16 38 H 0.10 1.40 7.85 -2.38 -0.02 1.38 16 39 H 0.10 1.83 7.60 -2.39 -0.02 1.81 16 40 H 0.12 1.41 7.23 -2.39 -0.02 1.40 16 Total: -1.00 -75.28 319.50 1.93 -73.35 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.38 Total: 10.98 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 7.44 Total: 8.16 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -5.94 Total: -126.41 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -1.97 Total: -10.98 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -75.28 1.93 -73.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121298845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.282 kcal (2) G-P(sol) polarization free energy of solvation -75.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds