Wall clock time and date at job start Mon Mar 30 2020 00:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.52997 * 109.47206 * 120.00470 * 2 1 3 5 5 O 1.42899 * 109.46925 * 294.99428 * 4 2 1 6 6 C 1.50706 * 109.46708 * 239.99945 * 2 1 3 7 7 N 1.30294 * 126.35031 * 299.68933 * 6 2 1 8 8 N 1.28530 * 110.05192 * 179.82130 * 7 6 2 9 9 C 1.31212 * 109.85927 * 0.45384 * 8 7 6 10 10 N 1.38582 * 126.47143 * 179.73075 * 9 8 7 11 11 C 1.46899 * 110.99812 * 236.04506 * 10 9 8 12 12 C 1.46899 * 110.99825 * 359.97438 * 10 9 8 13 13 H 1.08997 * 109.47200 * 300.00108 * 12 10 9 14 14 C 1.53001 * 109.47057 * 60.00443 * 12 10 9 15 15 C 1.50701 * 109.46993 * 180.02562 * 12 10 9 16 16 H 1.07995 * 120.00243 * 0.02562 * 15 12 10 17 17 C 1.37883 * 119.99979 * 180.02562 * 15 12 10 18 18 N 1.31514 * 119.99851 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99922 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47028 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47015 * 119.99951 * 19 17 15 22 22 H 1.48492 * 109.46948 * 239.99750 * 19 17 15 23 23 N 1.36450 * 107.05599 * 359.72814 * 9 8 7 24 24 C 1.46508 * 127.13531 * 180.02562 * 23 9 8 25 25 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46792 * 299.99932 * 1 2 3 27 27 H 1.09002 * 109.47539 * 59.99857 * 1 2 3 28 28 H 1.08999 * 109.47302 * 54.99655 * 4 2 1 29 29 H 1.09006 * 109.47192 * 174.99865 * 4 2 1 30 30 H 0.96700 * 113.99921 * 179.97438 * 5 4 2 31 31 H 1.08999 * 109.47755 * 60.00002 * 11 10 9 32 32 H 1.09006 * 109.47216 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.46970 * 299.99600 * 11 10 9 34 34 H 1.09001 * 109.47016 * 299.99709 * 14 12 10 35 35 H 1.08997 * 109.47389 * 59.99781 * 14 12 10 36 36 H 1.08997 * 109.47064 * 180.02562 * 14 12 10 37 37 H 0.96996 * 119.99961 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.46654 * 269.99801 * 24 23 9 39 39 H 1.08997 * 109.47302 * 29.99823 * 24 23 9 40 40 H 1.08997 * 109.47034 * 150.00051 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 1.6621 0.0167 2.4130 6 6 2.0322 -0.7105 -1.2305 7 7 1.7996 -1.9506 -1.5553 8 7 2.3760 -2.2300 -2.6696 9 6 3.0206 -1.1772 -3.1142 10 7 3.7633 -1.0982 -4.2816 11 6 5.1387 -0.6646 -4.0021 12 6 3.7514 -2.3791 -5.0007 13 1 4.1786 -3.1558 -4.3665 14 6 2.3108 -2.7489 -5.3599 15 6 4.5678 -2.2550 -6.2613 16 1 5.0479 -1.3185 -6.5038 17 6 4.7019 -3.3372 -7.1051 18 7 4.1168 -4.4775 -6.8101 19 14 5.7145 -3.1836 -8.6674 20 1 6.2643 -1.8078 -8.7676 21 1 6.8318 -4.1612 -8.6311 22 1 4.8530 -3.4600 -9.8448 23 7 2.8215 -0.1747 -2.2102 24 6 3.3445 1.1923 -2.2758 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6053 -1.7199 1.2950 29 1 3.1264 -0.7996 1.2055 30 1 1.9526 -0.3834 3.2440 31 1 5.6161 -1.3795 -3.3319 32 1 5.6997 -0.6115 -4.9353 33 1 5.1212 0.3186 -3.5319 34 1 1.7206 -2.8388 -4.4479 35 1 1.8836 -1.9722 -5.9940 36 1 2.3019 -3.6995 -5.8930 37 1 4.2108 -5.2387 -7.4039 38 1 4.3135 1.2348 -1.7785 39 1 3.4580 1.4882 -3.3187 40 1 2.6511 1.8708 -1.7790 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121298847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:24 Heat of formation + Delta-G solvation = 46.330343 kcal Electronic energy + Delta-G solvation = -21381.768944 eV Core-core repulsion = 18233.941139 eV Total energy + Delta-G solvation = -3147.827805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.53395 -37.69049 -37.02186 -34.81100 -33.85122 -32.66662 -29.24690 -28.79280 -27.46929 -26.43635 -25.37536 -24.29064 -22.97534 -21.61423 -20.02782 -19.18464 -17.74027 -16.72725 -16.27371 -15.90663 -15.51027 -15.12517 -14.61943 -14.32153 -14.25132 -13.92338 -13.35107 -13.13863 -12.91228 -12.67226 -12.37471 -12.12889 -11.83479 -11.54203 -11.21111 -11.04979 -11.03360 -10.85740 -10.53236 -10.38185 -10.20812 -10.13728 -10.06010 -9.84597 -9.57568 -9.35918 -8.63511 -8.45962 -7.36167 -6.05535 -4.13728 2.20009 2.63534 3.26451 3.34277 3.36042 3.37100 4.00614 4.30818 4.50402 4.60862 4.76361 4.79235 5.00132 5.11184 5.18573 5.26042 5.39113 5.49650 5.53071 5.60888 5.73859 5.80419 5.95940 5.99711 6.11743 6.29226 6.34031 6.45993 6.88764 7.00944 7.18998 7.38354 7.40361 7.45157 7.69972 7.72943 7.97418 8.28249 8.43569 8.87941 9.36333 9.51022 11.00542 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040450 B = 0.004474 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.044583 B = 6256.499405 C = 6563.040471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.012 3.988 3 H 0.086 0.914 4 C 0.088 3.912 5 O -0.574 6.574 6 C 0.145 3.855 7 N -0.278 5.278 8 N -0.315 5.315 9 C 0.388 3.612 10 N -0.454 5.454 11 C 0.033 3.967 12 C 0.230 3.770 13 H 0.021 0.979 14 C -0.143 4.143 15 C -0.519 4.519 16 H 0.065 0.935 17 C 0.064 3.936 18 N -0.882 5.882 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 N -0.492 5.492 24 C 0.078 3.922 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.381 0.619 31 H 0.029 0.971 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.022 0.978 36 H 0.087 0.913 37 H 0.262 0.738 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.432 11.361 13.785 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.010 4.010 3 H 0.104 0.896 4 C 0.010 3.990 5 O -0.379 6.379 6 C -0.123 4.123 7 N -0.117 5.117 8 N -0.160 5.160 9 C 0.032 3.968 10 N -0.178 5.178 11 C -0.115 4.115 12 C 0.126 3.874 13 H 0.039 0.961 14 C -0.202 4.202 15 C -0.557 4.557 16 H 0.083 0.917 17 C -0.138 4.138 18 N -0.520 5.520 19 Si 0.727 3.273 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 N -0.189 5.189 24 C -0.065 4.065 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.228 0.772 31 H 0.047 0.953 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.423 10.492 12.960 16.850 hybrid contribution 1.689 0.560 -0.340 1.812 sum -0.734 11.052 12.620 16.792 Atomic orbital electron populations 1.21734 0.92466 1.03288 1.01923 1.19200 0.97209 0.97781 0.86767 0.89584 1.22088 0.98038 0.94640 0.84282 1.86389 1.81728 1.53435 1.16393 1.24068 1.00362 0.93241 0.94619 1.73905 1.19209 1.10504 1.08111 1.74853 1.15687 1.20128 1.05315 1.23312 1.00170 0.84112 0.89163 1.59082 1.11324 1.36458 1.10890 1.22442 0.87979 0.98085 1.02960 1.19379 0.95829 0.80292 0.91866 0.96145 1.21972 0.95958 1.02270 0.99966 1.21102 1.31159 0.97835 1.05631 0.91695 1.24903 0.95763 0.95131 0.98050 1.69938 1.42828 1.01790 1.37412 0.86420 0.79807 0.78052 0.82979 1.19753 1.21013 1.20894 1.46050 1.41101 1.12058 1.19728 1.22028 0.99680 0.79871 1.04932 0.91404 0.91211 0.92696 0.92014 0.93702 0.77158 0.95276 0.88280 0.93142 0.93576 0.95833 0.89495 0.92765 0.90795 0.88693 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.07 37.16 0.34 -1.25 16 2 C 0.01 0.14 2.99 -91.77 -0.27 -0.13 16 3 H 0.09 0.91 6.94 -51.93 -0.36 0.55 16 4 C 0.09 0.97 6.41 37.16 0.24 1.21 16 5 O -0.57 -5.40 13.19 -35.23 -0.46 -5.87 16 6 C 0.14 2.39 6.58 -154.01 -1.01 1.37 16 7 N -0.28 -5.68 12.18 32.99 0.40 -5.28 16 8 N -0.32 -7.33 9.00 30.31 0.27 -7.06 16 9 C 0.39 8.18 6.76 -318.88 -2.15 6.02 16 10 N -0.45 -9.94 4.69 -176.08 -0.83 -10.77 16 11 C 0.03 0.60 9.08 60.06 0.55 1.14 16 12 C 0.23 5.98 1.73 -68.86 -0.12 5.86 16 13 H 0.02 0.60 8.11 -51.93 -0.42 0.18 16 14 C -0.14 -3.80 8.77 37.16 0.33 -3.48 16 15 C -0.52 -13.90 7.88 -34.44 -0.27 -14.17 16 16 H 0.06 1.68 6.40 -52.49 -0.34 1.34 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -25.25 11.32 55.43 0.63 -24.62 16 19 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 N -0.49 -8.18 3.21 -121.45 -0.39 -8.57 16 24 C 0.08 0.88 9.20 59.85 0.55 1.43 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.72 7.82 -51.93 -0.41 0.31 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.38 1.89 9.12 45.56 0.42 2.31 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 1.86 6.10 -51.93 -0.32 1.54 16 33 H 0.05 0.72 5.41 -51.93 -0.28 0.44 16 34 H 0.05 1.21 5.43 -51.93 -0.28 0.92 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.07 0.70 7.85 -51.93 -0.41 0.29 16 39 H 0.09 1.09 7.57 -51.93 -0.39 0.69 16 40 H 0.08 0.73 7.23 -51.93 -0.38 0.35 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -33.06 319.42 -7.66 -40.73 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.15 Total: 1.13 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.93 Total: -0.33 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.09 Total: -56.30 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.46 Total: -5.87 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.06 -7.66 -40.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121298847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.057 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds