Wall clock time and date at job start Mon Mar 30 2020 00:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.52997 * 109.47206 * 120.00470 * 2 1 3 5 5 O 1.42899 * 109.46925 * 294.99428 * 4 2 1 6 6 C 1.50706 * 109.46708 * 239.99945 * 2 1 3 7 7 N 1.30294 * 126.35031 * 299.68933 * 6 2 1 8 8 N 1.28530 * 110.05192 * 179.82130 * 7 6 2 9 9 C 1.31212 * 109.85927 * 0.45384 * 8 7 6 10 10 N 1.38582 * 126.47143 * 179.73075 * 9 8 7 11 11 C 1.46899 * 110.99812 * 236.04506 * 10 9 8 12 12 C 1.46899 * 110.99825 * 359.97438 * 10 9 8 13 13 H 1.08997 * 109.47200 * 300.00108 * 12 10 9 14 14 C 1.53001 * 109.47057 * 60.00443 * 12 10 9 15 15 C 1.50701 * 109.46993 * 180.02562 * 12 10 9 16 16 H 1.07995 * 120.00243 * 0.02562 * 15 12 10 17 17 C 1.37883 * 119.99979 * 180.02562 * 15 12 10 18 18 N 1.31514 * 119.99851 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99922 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47028 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47015 * 119.99951 * 19 17 15 22 22 H 1.48492 * 109.46948 * 239.99750 * 19 17 15 23 23 N 1.36450 * 107.05599 * 359.72814 * 9 8 7 24 24 C 1.46508 * 127.13531 * 180.02562 * 23 9 8 25 25 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46792 * 299.99932 * 1 2 3 27 27 H 1.09002 * 109.47539 * 59.99857 * 1 2 3 28 28 H 1.08999 * 109.47302 * 54.99655 * 4 2 1 29 29 H 1.09006 * 109.47192 * 174.99865 * 4 2 1 30 30 H 0.96700 * 113.99921 * 179.97438 * 5 4 2 31 31 H 1.08999 * 109.47755 * 60.00002 * 11 10 9 32 32 H 1.09006 * 109.47216 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.46970 * 299.99600 * 11 10 9 34 34 H 1.09001 * 109.47016 * 299.99709 * 14 12 10 35 35 H 1.08997 * 109.47389 * 59.99781 * 14 12 10 36 36 H 1.08997 * 109.47064 * 180.02562 * 14 12 10 37 37 H 0.96996 * 119.99961 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.46654 * 269.99801 * 24 23 9 39 39 H 1.08997 * 109.47302 * 29.99823 * 24 23 9 40 40 H 1.08997 * 109.47034 * 150.00051 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 1.6621 0.0167 2.4130 6 6 2.0322 -0.7105 -1.2305 7 7 1.7996 -1.9506 -1.5553 8 7 2.3760 -2.2300 -2.6696 9 6 3.0206 -1.1772 -3.1142 10 7 3.7633 -1.0982 -4.2816 11 6 5.1387 -0.6646 -4.0021 12 6 3.7514 -2.3791 -5.0007 13 1 4.1786 -3.1558 -4.3665 14 6 2.3108 -2.7489 -5.3599 15 6 4.5678 -2.2550 -6.2613 16 1 5.0479 -1.3185 -6.5038 17 6 4.7019 -3.3372 -7.1051 18 7 4.1168 -4.4775 -6.8101 19 14 5.7145 -3.1836 -8.6674 20 1 6.2643 -1.8078 -8.7676 21 1 6.8318 -4.1612 -8.6311 22 1 4.8530 -3.4600 -9.8448 23 7 2.8215 -0.1747 -2.2102 24 6 3.3445 1.1923 -2.2758 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6053 -1.7199 1.2950 29 1 3.1264 -0.7996 1.2055 30 1 1.9526 -0.3834 3.2440 31 1 5.6161 -1.3795 -3.3319 32 1 5.6997 -0.6115 -4.9353 33 1 5.1212 0.3186 -3.5319 34 1 1.7206 -2.8388 -4.4479 35 1 1.8836 -1.9722 -5.9940 36 1 2.3019 -3.6995 -5.8930 37 1 4.2108 -5.2387 -7.4039 38 1 4.3135 1.2348 -1.7785 39 1 3.4580 1.4882 -3.3187 40 1 2.6511 1.8708 -1.7790 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121298847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:23 Heat of formation + Delta-G solvation = 23.079821 kcal Electronic energy + Delta-G solvation = -21382.777162 eV Core-core repulsion = 18233.941139 eV Total energy + Delta-G solvation = -3148.836023 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.98604 -39.05803 -38.22361 -36.11912 -35.15117 -34.36931 -31.20891 -30.28321 -28.58954 -27.44453 -27.19256 -25.98400 -24.24610 -23.31910 -21.46936 -20.62048 -18.64431 -18.49369 -17.64951 -17.41435 -17.05337 -16.54906 -15.96703 -15.73827 -15.49576 -15.06693 -14.85907 -14.55010 -14.21028 -13.90622 -13.61248 -13.52604 -13.09009 -12.95132 -12.82560 -12.73174 -12.51116 -12.27526 -12.18675 -12.11870 -12.01358 -11.86665 -11.42214 -11.07279 -11.02308 -10.89615 -10.57285 -10.47340 -9.03771 -8.13306 -6.29340 0.81801 1.32315 1.44696 1.46073 1.57973 1.86065 2.41163 2.92862 3.12839 3.18694 3.50488 3.80159 3.84658 4.08001 4.13890 4.23420 4.30246 4.35042 4.46327 4.56682 4.61368 4.66666 4.75615 4.82606 4.86749 4.96392 4.97299 5.11257 5.15808 5.27402 5.35562 5.41058 5.56531 5.65128 5.94031 6.00250 6.16073 6.56947 6.80765 6.87098 7.39744 7.86916 8.93638 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040450 B = 0.004474 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.044583 B = 6256.499405 C = 6563.040471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.011 3.989 3 H 0.115 0.885 4 C 0.097 3.903 5 O -0.576 6.576 6 C 0.173 3.827 7 N -0.320 5.320 8 N -0.365 5.365 9 C 0.367 3.633 10 N -0.455 5.455 11 C 0.034 3.966 12 C 0.242 3.758 13 H -0.025 1.025 14 C -0.128 4.128 15 C -0.528 4.528 16 H 0.076 0.924 17 C 0.012 3.988 18 N -0.919 5.919 19 Si 0.971 3.029 20 H -0.258 1.258 21 H -0.281 1.281 22 H -0.283 1.283 23 N -0.484 5.484 24 C 0.063 3.937 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.402 0.598 31 H 0.016 0.984 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.044 0.956 35 H 0.019 0.981 36 H 0.060 0.940 37 H 0.263 0.737 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.668 14.444 14.726 20.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.010 4.010 3 H 0.133 0.867 4 C 0.018 3.982 5 O -0.385 6.385 6 C -0.096 4.096 7 N -0.158 5.158 8 N -0.210 5.210 9 C 0.010 3.990 10 N -0.179 5.179 11 C -0.113 4.113 12 C 0.137 3.863 13 H -0.007 1.007 14 C -0.186 4.186 15 C -0.567 4.567 16 H 0.094 0.906 17 C -0.188 4.188 18 N -0.558 5.558 19 Si 0.796 3.204 20 H -0.181 1.181 21 H -0.207 1.207 22 H -0.209 1.209 23 N -0.180 5.180 24 C -0.077 4.077 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.252 0.748 31 H 0.035 0.965 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.650 13.618 13.945 19.561 hybrid contribution 1.397 -0.321 -0.438 1.499 sum -0.253 13.297 13.507 18.955 Atomic orbital electron populations 1.21696 0.91937 1.02464 1.02841 1.19471 0.97519 0.98787 0.85232 0.86658 1.21840 0.97890 0.93930 0.84571 1.86332 1.81860 1.53388 1.16912 1.24909 0.97708 0.92155 0.94861 1.73812 1.21022 1.13008 1.07987 1.74688 1.16974 1.22428 1.06905 1.23159 1.00626 0.85313 0.89942 1.58993 1.13203 1.33939 1.11766 1.22539 0.86033 0.99917 1.02796 1.18958 0.94615 0.81263 0.91488 1.00721 1.21772 0.96863 1.00670 0.99334 1.21411 1.31154 0.98276 1.05821 0.90642 1.25825 0.96837 0.94671 1.01444 1.70098 1.44272 1.02644 1.38747 0.85308 0.78007 0.78668 0.78434 1.18137 1.20725 1.20890 1.46279 1.40395 1.13129 1.18163 1.22522 1.01879 0.77314 1.06019 0.93171 0.89201 0.92788 0.93313 0.93535 0.74755 0.96521 0.88860 0.88621 0.93760 0.96140 0.92103 0.92785 0.88162 0.88586 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.07 71.98 0.65 -2.11 16 2 C 0.01 0.23 2.99 -11.54 -0.03 0.20 16 3 H 0.12 1.88 6.94 -2.39 -0.02 1.86 16 4 C 0.10 1.90 6.41 71.98 0.46 2.36 16 5 O -0.58 -8.91 13.19 -148.98 -1.97 -10.87 16 6 C 0.17 5.47 6.58 137.64 0.91 6.37 16 7 N -0.32 -13.30 12.18 -49.53 -0.60 -13.90 16 8 N -0.37 -17.61 9.00 -58.01 -0.52 -18.13 16 9 C 0.37 15.54 6.76 260.11 1.76 17.30 16 10 N -0.46 -20.06 4.69 -711.00 -3.33 -23.40 16 11 C 0.03 1.20 9.08 127.69 1.16 2.36 16 12 C 0.24 13.06 1.73 44.17 0.08 13.13 16 13 H -0.02 -1.54 8.11 -2.39 -0.02 -1.56 16 14 C -0.13 -7.11 8.77 71.98 0.63 -6.48 16 15 C -0.53 -28.70 7.88 25.60 0.20 -28.50 16 16 H 0.08 3.86 6.40 -2.91 -0.02 3.84 16 17 C 0.01 0.64 5.30 84.66 0.45 1.09 16 18 N -0.92 -54.39 11.32 21.45 0.24 -54.14 16 19 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 20 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 23 N -0.48 -15.15 3.21 -538.17 -1.73 -16.88 16 24 C 0.06 1.17 9.20 127.77 1.18 2.35 16 25 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.09 1.56 7.82 -2.39 -0.02 1.54 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.40 2.70 9.12 -74.06 -0.68 2.03 16 31 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 3.41 6.10 -2.38 -0.01 3.40 16 33 H 0.10 2.48 5.41 -2.39 -0.01 2.46 16 34 H 0.04 2.45 5.43 -2.39 -0.01 2.43 16 35 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 3.66 6.07 -2.39 -0.01 3.65 16 37 H 0.26 14.71 8.31 -92.71 -0.77 13.93 16 38 H 0.10 1.39 7.85 -2.39 -0.02 1.37 16 39 H 0.10 1.83 7.57 -2.39 -0.02 1.81 16 40 H 0.12 1.42 7.23 -2.39 -0.02 1.40 16 Total: -1.00 -75.36 319.42 1.93 -73.43 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.38 Total: 10.92 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 7.44 Total: 8.08 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -5.94 Total: -126.45 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -1.97 Total: -10.87 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -75.36 1.93 -73.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121298847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.513 kcal (2) G-P(sol) polarization free energy of solvation -75.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds