Wall clock time and date at job start Mon Mar 30 2020 00:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46795 * 2 1 4 4 C 1.50699 * 109.47270 * 239.99997 * 2 1 3 5 5 H 1.07998 * 119.99308 * 354.60407 * 4 2 1 6 6 C 1.37875 * 119.99953 * 174.60707 * 4 2 1 7 7 N 1.31516 * 119.99931 * 173.91787 * 6 4 2 8 8 Si 1.86797 * 120.00056 * 353.90972 * 6 4 2 9 9 H 1.48500 * 109.46919 * 87.61540 * 8 6 4 10 10 H 1.48498 * 109.47144 * 207.61263 * 8 6 4 11 11 H 1.48497 * 109.47142 * 327.61579 * 8 6 4 12 12 N 1.46900 * 109.47234 * 119.99484 * 2 1 3 13 13 C 1.46900 * 110.99923 * 58.95762 * 12 2 1 14 14 C 1.38572 * 111.00454 * 295.00274 * 12 2 1 15 15 N 1.31220 * 126.47416 * 69.85074 * 14 12 2 16 16 N 1.28533 * 109.86295 * 180.02562 * 15 14 12 17 17 C 1.30296 * 110.05096 * 359.72143 * 16 15 14 18 18 C 1.50700 * 126.34445 * 180.31751 * 17 16 15 19 19 H 1.09006 * 109.46839 * 180.15396 * 18 17 16 20 20 C 1.52994 * 109.47498 * 60.15017 * 18 17 16 21 21 C 1.52995 * 109.47066 * 300.14900 * 18 17 16 22 22 O 1.42903 * 109.47211 * 185.00664 * 21 18 17 23 23 N 1.36452 * 126.47592 * 249.89641 * 14 12 2 24 24 C 1.46498 * 127.13635 * 359.96741 * 23 14 12 25 25 H 1.09003 * 109.47124 * 305.74891 * 1 2 3 26 26 H 1.09001 * 109.47083 * 65.74733 * 1 2 3 27 27 H 1.09002 * 109.47290 * 185.75148 * 1 2 3 28 28 H 0.96998 * 120.00121 * 179.97438 * 7 6 4 29 29 H 1.09007 * 109.47128 * 290.21313 * 13 12 2 30 30 H 1.09002 * 109.47259 * 50.20443 * 13 12 2 31 31 H 1.08991 * 109.47301 * 170.21047 * 13 12 2 32 32 H 1.09010 * 109.47182 * 59.99866 * 20 18 17 33 33 H 1.09003 * 109.47274 * 180.02562 * 20 18 17 34 34 H 1.08998 * 109.47115 * 300.00045 * 20 18 17 35 35 H 1.09007 * 109.47109 * 305.00214 * 21 18 17 36 36 H 1.08998 * 109.47415 * 65.00291 * 21 18 17 37 37 H 0.96701 * 113.99807 * 180.02562 * 22 21 18 38 38 H 1.09003 * 109.47691 * 86.61348 * 24 23 14 39 39 H 1.09003 * 109.47492 * 206.61769 * 24 23 14 40 40 H 1.09005 * 109.46956 * 326.61462 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 1.3344 -1.1963 -1.8961 6 6 3.3829 -0.7400 -1.5062 7 7 3.8332 -1.4588 -2.5114 8 14 4.5731 0.2408 -0.4523 9 1 4.9941 -0.5788 0.7123 10 1 5.7658 0.6034 -1.2594 11 1 3.9057 1.4773 0.0279 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2461 14 6 1.6698 -0.0022 2.3490 15 7 0.4613 0.1271 2.8439 16 7 0.5025 0.8312 3.9184 17 6 1.7302 1.1850 4.1739 18 6 2.1964 2.0096 5.3460 19 1 3.2768 2.1434 5.2892 20 6 1.8392 1.2916 6.6490 21 6 1.5108 3.3769 5.3126 22 8 2.0386 4.2000 6.3547 23 7 2.5165 0.6721 3.1798 24 6 3.9681 0.8118 3.0395 25 1 -0.3633 0.6004 0.8341 26 1 -0.3633 0.4221 -0.9370 27 1 -0.3634 -1.0225 0.1030 28 1 4.7833 -1.4793 -2.7057 29 1 0.4555 -2.0743 1.4385 30 1 1.7254 -2.5639 0.2915 31 1 2.0396 -2.6164 2.0427 32 1 2.3277 0.3174 6.6728 33 1 2.1761 1.8882 7.4967 34 1 0.7590 1.1578 6.7057 35 1 1.6924 3.8509 4.3480 36 1 0.4382 3.2492 5.4585 37 1 1.6483 5.0839 6.3935 38 1 4.1908 1.6661 2.4001 39 1 4.4149 0.9669 4.0216 40 1 4.3787 -0.0935 2.5924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121298848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:26 Heat of formation + Delta-G solvation = 42.553950 kcal Electronic energy + Delta-G solvation = -21819.451342 eV Core-core repulsion = 18671.459780 eV Total energy + Delta-G solvation = -3147.991562 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.62700 -37.79002 -37.19070 -34.76709 -33.87811 -32.49862 -30.03524 -28.38649 -27.36422 -26.48419 -25.63442 -25.08346 -23.03610 -21.27342 -19.87170 -19.27013 -17.78519 -17.03275 -16.49796 -16.04168 -15.73340 -15.08622 -14.71210 -14.46215 -14.18776 -13.69512 -13.43914 -13.06941 -12.99565 -12.71705 -12.42933 -12.21279 -11.97641 -11.64017 -11.46826 -11.22578 -11.12506 -11.05871 -10.78793 -10.65269 -10.34736 -10.16996 -9.91720 -9.85625 -9.68278 -9.30732 -8.71055 -8.56790 -7.80659 -6.22493 -4.27764 2.06320 2.59277 3.17732 3.26058 3.27493 3.33451 3.94550 4.35488 4.43115 4.51144 4.72337 4.82320 4.95658 5.12205 5.22774 5.28332 5.44821 5.46509 5.60370 5.67511 5.71728 5.81487 5.98355 6.08943 6.21118 6.25807 6.31402 6.42834 6.54165 6.55683 6.75626 6.92833 7.04806 7.21104 7.37303 7.46660 7.67524 8.09447 8.41681 8.81650 9.13427 9.41208 10.87178 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026100 B = 0.006266 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.523866 B = 4467.238195 C = 4948.289359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.180 3.820 3 H 0.041 0.959 4 C -0.508 4.508 5 H 0.080 0.920 6 C 0.087 3.913 7 N -0.887 5.887 8 Si 0.901 3.099 9 H -0.269 1.269 10 H -0.302 1.302 11 H -0.274 1.274 12 N -0.474 5.474 13 C 0.047 3.953 14 C 0.373 3.627 15 N -0.318 5.318 16 N -0.284 5.284 17 C 0.156 3.844 18 C 0.007 3.993 19 H 0.088 0.912 20 C -0.135 4.135 21 C 0.088 3.912 22 O -0.573 6.573 23 N -0.471 5.471 24 C 0.071 3.929 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.266 0.734 29 H 0.037 0.963 30 H 0.099 0.901 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.382 0.618 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 7.459 15.130 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.077 3.923 3 H 0.059 0.941 4 C -0.547 4.547 5 H 0.098 0.902 6 C -0.119 4.119 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.195 1.195 10 H -0.229 1.229 11 H -0.200 1.200 12 N -0.202 5.202 13 C -0.100 4.100 14 C 0.018 3.982 15 N -0.162 5.162 16 N -0.125 5.125 17 C -0.112 4.112 18 C -0.014 4.014 19 H 0.107 0.893 20 C -0.193 4.193 21 C 0.010 3.990 22 O -0.379 6.379 23 N -0.164 5.164 24 C -0.073 4.073 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.229 0.771 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.199 6.692 15.209 16.617 hybrid contribution 1.190 1.059 0.044 1.594 sum 0.991 7.751 15.253 17.138 Atomic orbital electron populations 1.22312 0.97938 1.01472 1.00493 1.19939 0.91536 0.94688 0.86141 0.94088 1.20887 0.93233 1.35917 1.04613 0.90206 1.25035 0.98445 0.94114 0.94268 1.69939 1.14790 1.38556 1.29029 0.86502 0.79426 0.80704 0.80283 1.19473 1.22926 1.19986 1.60103 1.59433 1.03097 0.97595 1.22166 0.97761 0.86723 1.03325 1.23209 0.84904 0.96424 0.93663 1.74706 1.18032 1.17374 1.06073 1.73879 1.16155 1.12061 1.10452 1.24212 0.88642 1.04131 0.94178 1.19273 1.00413 0.91784 0.89966 0.89334 1.21721 1.02808 0.99698 0.95039 1.22069 0.97463 0.89704 0.89783 1.86390 1.67669 1.29013 1.54801 1.46274 1.09399 1.40684 1.19994 1.22236 0.76547 1.05127 1.03362 0.93313 0.93004 0.92913 0.92424 0.94399 0.88264 0.93725 0.92706 0.91058 0.91433 0.93585 0.92022 0.77083 0.90490 0.89641 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 8.35 37.16 0.31 -3.22 16 2 C 0.18 4.23 1.67 -68.87 -0.12 4.11 16 3 H 0.04 1.02 6.63 -51.93 -0.34 0.68 16 4 C -0.51 -13.49 7.65 -34.44 -0.26 -13.75 16 5 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 6 C 0.09 2.36 5.46 -17.82 -0.10 2.27 16 7 N -0.89 -25.62 13.96 55.43 0.77 -24.85 16 8 Si 0.90 21.13 24.87 -169.99 -4.23 16.90 16 9 H -0.27 -5.95 5.98 56.52 0.34 -5.61 16 10 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.27 -6.30 6.42 56.52 0.36 -5.94 16 12 N -0.47 -10.37 3.20 -176.08 -0.56 -10.93 16 13 C 0.05 0.97 8.69 60.06 0.52 1.49 16 14 C 0.37 7.73 6.21 -318.88 -1.98 5.75 16 15 N -0.32 -6.73 9.82 30.31 0.30 -6.43 16 16 N -0.28 -5.47 12.18 32.99 0.40 -5.07 16 17 C 0.16 2.58 6.58 -154.01 -1.01 1.56 16 18 C 0.01 0.08 2.99 -91.78 -0.27 -0.19 16 19 H 0.09 1.00 6.86 -51.93 -0.36 0.64 16 20 C -0.13 -1.52 9.07 37.15 0.34 -1.18 16 21 C 0.09 0.99 6.41 37.15 0.24 1.23 16 22 O -0.57 -5.52 13.19 -35.23 -0.46 -5.99 16 23 N -0.47 -8.43 3.21 -121.46 -0.39 -8.82 16 24 C 0.07 1.05 10.07 59.85 0.60 1.65 16 25 H 0.05 1.05 6.27 -51.93 -0.33 0.72 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.05 1.12 6.31 -51.93 -0.33 0.79 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.04 0.76 6.44 -51.93 -0.33 0.42 16 30 H 0.10 2.17 6.81 -51.93 -0.35 1.82 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.38 1.97 9.12 45.56 0.42 2.39 16 38 H 0.08 1.13 7.83 -51.93 -0.41 0.72 16 39 H 0.08 0.93 7.07 -51.93 -0.37 0.56 16 40 H 0.10 1.62 6.51 -51.93 -0.34 1.28 16 LS Contribution 315.90 15.07 4.76 4.76 Total: -1.00 -31.40 315.90 -6.49 -37.88 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.34 Total: 2.84 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.73 Total: -0.29 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.52 Total: -56.11 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.46 Total: -5.99 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.23 Total: 16.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.40 -6.49 -37.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121298848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.436 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds