Wall clock time and date at job start Mon Mar 30 2020 00:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46795 * 2 1 4 4 C 1.50699 * 109.47270 * 239.99997 * 2 1 3 5 5 H 1.07998 * 119.99308 * 354.60407 * 4 2 1 6 6 C 1.37875 * 119.99953 * 174.60707 * 4 2 1 7 7 N 1.31516 * 119.99931 * 173.91787 * 6 4 2 8 8 Si 1.86797 * 120.00056 * 353.90972 * 6 4 2 9 9 H 1.48500 * 109.46919 * 87.61540 * 8 6 4 10 10 H 1.48498 * 109.47144 * 207.61263 * 8 6 4 11 11 H 1.48497 * 109.47142 * 327.61579 * 8 6 4 12 12 N 1.46900 * 109.47234 * 119.99484 * 2 1 3 13 13 C 1.46900 * 110.99923 * 58.95762 * 12 2 1 14 14 C 1.38572 * 111.00454 * 295.00274 * 12 2 1 15 15 N 1.31220 * 126.47416 * 69.85074 * 14 12 2 16 16 N 1.28533 * 109.86295 * 180.02562 * 15 14 12 17 17 C 1.30296 * 110.05096 * 359.72143 * 16 15 14 18 18 C 1.50700 * 126.34445 * 180.31751 * 17 16 15 19 19 H 1.09006 * 109.46839 * 180.15396 * 18 17 16 20 20 C 1.52994 * 109.47498 * 60.15017 * 18 17 16 21 21 C 1.52995 * 109.47066 * 300.14900 * 18 17 16 22 22 O 1.42903 * 109.47211 * 185.00664 * 21 18 17 23 23 N 1.36452 * 126.47592 * 249.89641 * 14 12 2 24 24 C 1.46498 * 127.13635 * 359.96741 * 23 14 12 25 25 H 1.09003 * 109.47124 * 305.74891 * 1 2 3 26 26 H 1.09001 * 109.47083 * 65.74733 * 1 2 3 27 27 H 1.09002 * 109.47290 * 185.75148 * 1 2 3 28 28 H 0.96998 * 120.00121 * 179.97438 * 7 6 4 29 29 H 1.09007 * 109.47128 * 290.21313 * 13 12 2 30 30 H 1.09002 * 109.47259 * 50.20443 * 13 12 2 31 31 H 1.08991 * 109.47301 * 170.21047 * 13 12 2 32 32 H 1.09010 * 109.47182 * 59.99866 * 20 18 17 33 33 H 1.09003 * 109.47274 * 180.02562 * 20 18 17 34 34 H 1.08998 * 109.47115 * 300.00045 * 20 18 17 35 35 H 1.09007 * 109.47109 * 305.00214 * 21 18 17 36 36 H 1.08998 * 109.47415 * 65.00291 * 21 18 17 37 37 H 0.96701 * 113.99807 * 180.02562 * 22 21 18 38 38 H 1.09003 * 109.47691 * 86.61348 * 24 23 14 39 39 H 1.09003 * 109.47492 * 206.61769 * 24 23 14 40 40 H 1.09005 * 109.46956 * 326.61462 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 1.3344 -1.1963 -1.8961 6 6 3.3829 -0.7400 -1.5062 7 7 3.8332 -1.4588 -2.5114 8 14 4.5731 0.2408 -0.4523 9 1 4.9941 -0.5788 0.7123 10 1 5.7658 0.6034 -1.2594 11 1 3.9057 1.4773 0.0279 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2461 14 6 1.6698 -0.0022 2.3490 15 7 0.4613 0.1271 2.8439 16 7 0.5025 0.8312 3.9184 17 6 1.7302 1.1850 4.1739 18 6 2.1964 2.0096 5.3460 19 1 3.2768 2.1434 5.2892 20 6 1.8392 1.2916 6.6490 21 6 1.5108 3.3769 5.3126 22 8 2.0386 4.2000 6.3547 23 7 2.5165 0.6721 3.1798 24 6 3.9681 0.8118 3.0395 25 1 -0.3633 0.6004 0.8341 26 1 -0.3633 0.4221 -0.9370 27 1 -0.3634 -1.0225 0.1030 28 1 4.7833 -1.4793 -2.7057 29 1 0.4555 -2.0743 1.4385 30 1 1.7254 -2.5639 0.2915 31 1 2.0396 -2.6164 2.0427 32 1 2.3277 0.3174 6.6728 33 1 2.1761 1.8882 7.4967 34 1 0.7590 1.1578 6.7057 35 1 1.6924 3.8509 4.3480 36 1 0.4382 3.2492 5.4585 37 1 1.6483 5.0839 6.3935 38 1 4.1908 1.6661 2.4001 39 1 4.4149 0.9669 4.0216 40 1 4.3787 -0.0935 2.5924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121298848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:26 Heat of formation + Delta-G solvation = 20.866877 kcal Electronic energy + Delta-G solvation = -21820.391764 eV Core-core repulsion = 18671.459780 eV Total energy + Delta-G solvation = -3148.931984 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.06140 -39.25561 -38.28267 -36.06841 -35.02970 -34.39703 -31.82478 -29.83881 -28.61675 -27.54756 -27.34906 -26.81666 -24.19108 -22.92960 -21.26281 -20.76428 -19.02486 -18.65893 -17.82389 -17.52954 -17.14366 -16.48521 -16.08912 -15.66123 -15.49770 -15.14506 -15.03087 -14.59434 -14.39529 -13.97517 -13.74725 -13.57553 -13.25968 -13.12293 -12.92668 -12.68147 -12.66700 -12.44408 -12.33872 -12.09097 -11.90698 -11.75592 -11.44412 -11.38168 -11.05822 -10.95119 -10.76145 -10.06537 -9.50401 -8.31587 -6.42264 0.66082 1.24886 1.34652 1.41521 1.50248 1.72888 2.40087 2.78666 3.00422 3.26926 3.45145 3.74192 3.81308 4.05053 4.08636 4.15279 4.23003 4.31658 4.42738 4.49771 4.54160 4.59177 4.62667 4.71683 4.77117 4.83749 4.94675 4.98082 5.03910 5.07871 5.19398 5.29704 5.35611 5.51299 5.68617 5.84417 6.24405 6.50629 6.70218 6.84882 7.30576 7.68048 8.81203 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026100 B = 0.006266 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.523866 B = 4467.238195 C = 4948.289359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.190 3.810 3 H 0.031 0.969 4 C -0.511 4.511 5 H 0.044 0.956 6 C 0.038 3.962 7 N -0.933 5.933 8 Si 0.956 3.044 9 H -0.246 1.246 10 H -0.304 1.304 11 H -0.266 1.266 12 N -0.476 5.476 13 C 0.055 3.945 14 C 0.350 3.650 15 N -0.337 5.337 16 N -0.312 5.312 17 C 0.181 3.819 18 C 0.004 3.996 19 H 0.110 0.890 20 C -0.128 4.128 21 C 0.097 3.903 22 O -0.577 6.577 23 N -0.472 5.472 24 C 0.061 3.939 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.268 0.732 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.402 0.598 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.433 9.060 18.043 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.086 3.914 3 H 0.049 0.951 4 C -0.549 4.549 5 H 0.062 0.938 6 C -0.163 4.163 7 N -0.571 5.571 8 Si 0.782 3.218 9 H -0.170 1.170 10 H -0.232 1.232 11 H -0.191 1.191 12 N -0.203 5.203 13 C -0.092 4.092 14 C -0.006 4.006 15 N -0.181 5.181 16 N -0.152 5.152 17 C -0.087 4.087 18 C -0.017 4.017 19 H 0.128 0.872 20 C -0.186 4.186 21 C 0.017 3.983 22 O -0.386 6.386 23 N -0.164 5.164 24 C -0.081 4.081 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.253 0.747 38 H 0.099 0.901 39 H 0.148 0.852 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.972 8.307 18.147 19.982 hybrid contribution 0.749 0.604 -0.774 1.235 sum 1.722 8.911 17.373 19.601 Atomic orbital electron populations 1.22182 0.96868 1.01467 1.00573 1.19651 0.92297 0.93599 0.85867 0.95116 1.20918 0.92846 1.35569 1.05574 0.93812 1.25786 1.00143 0.94926 0.95414 1.70059 1.15276 1.40573 1.31170 0.85657 0.77014 0.79825 0.79279 1.17018 1.23201 1.19052 1.59729 1.59474 1.03366 0.97718 1.22085 0.98048 0.86313 1.02768 1.22967 0.85616 0.98008 0.94041 1.74608 1.18730 1.17906 1.06875 1.73840 1.17795 1.13167 1.10397 1.24988 0.87651 1.02130 0.93937 1.19548 1.01692 0.91918 0.88560 0.87238 1.21678 1.02144 0.99938 0.94886 1.21846 0.96977 0.89311 0.90120 1.86336 1.67868 1.30352 1.53994 1.46454 1.10548 1.39875 1.19514 1.22526 0.74749 1.04664 1.06175 0.93064 0.92928 0.92982 0.92296 0.94343 0.90362 0.91838 0.92634 0.89330 0.92536 0.93964 0.92574 0.74710 0.90082 0.85214 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.62 8.35 71.98 0.60 -6.02 16 2 C 0.19 8.94 1.67 44.17 0.07 9.01 16 3 H 0.03 1.52 6.63 -2.39 -0.02 1.50 16 4 C -0.51 -27.80 7.65 25.60 0.20 -27.60 16 5 H 0.04 2.63 7.99 -2.91 -0.02 2.61 16 6 C 0.04 2.12 5.46 84.65 0.46 2.58 16 7 N -0.93 -55.22 13.96 21.45 0.30 -54.92 16 8 Si 0.96 42.94 24.87 68.60 1.71 44.65 16 9 H -0.25 -10.05 5.98 99.48 0.59 -9.46 16 10 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 11 H -0.27 -11.45 6.42 99.48 0.64 -10.81 16 12 N -0.48 -20.38 3.20 -711.01 -2.28 -22.66 16 13 C 0.05 2.24 8.69 127.69 1.11 3.34 16 14 C 0.35 13.96 6.21 260.12 1.62 15.57 16 15 N -0.34 -13.89 9.82 -58.01 -0.57 -14.46 16 16 N -0.31 -11.46 12.18 -49.54 -0.60 -12.06 16 17 C 0.18 5.48 6.58 137.64 0.91 6.38 16 18 C 0.00 0.08 2.99 -11.54 -0.03 0.05 16 19 H 0.11 1.91 6.86 -2.38 -0.02 1.89 16 20 C -0.13 -2.45 9.07 71.98 0.65 -1.80 16 21 C 0.10 1.85 6.41 71.98 0.46 2.31 16 22 O -0.58 -8.88 13.19 -148.98 -1.97 -10.85 16 23 N -0.47 -15.55 3.21 -538.18 -1.73 -17.28 16 24 C 0.06 1.56 10.07 127.77 1.29 2.85 16 25 H 0.05 2.20 6.27 -2.39 -0.01 2.18 16 26 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.05 2.23 6.31 -2.39 -0.02 2.22 16 28 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.04 1.54 6.44 -2.38 -0.02 1.52 16 30 H 0.08 3.50 6.81 -2.39 -0.02 3.48 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.09 1.42 7.82 -2.39 -0.02 1.40 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.40 2.68 9.12 -74.06 -0.68 2.00 16 38 H 0.08 2.05 7.83 -2.39 -0.02 2.03 16 39 H 0.13 2.13 7.07 -2.39 -0.02 2.11 16 40 H 0.09 2.53 6.51 -2.38 -0.02 2.51 16 Total: -1.00 -68.34 315.90 2.38 -65.96 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.19 Total: 14.95 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 7.33 Total: 6.67 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -4.88 Total: -121.38 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -1.97 Total: -10.85 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.71 Total: 44.65 kcal Total: -68.34 2.38 -65.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121298848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.826 kcal (2) G-P(sol) polarization free energy of solvation -68.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds