Wall clock time and date at job start Mon Mar 30 2020 00:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47204 * 2 1 4 4 C 1.50698 * 109.46563 * 240.00148 * 2 1 3 5 5 H 1.08000 * 120.00665 * 355.16402 * 4 2 1 6 6 C 1.37881 * 119.99776 * 175.17085 * 4 2 1 7 7 N 1.31516 * 120.00234 * 175.19009 * 6 4 2 8 8 Si 1.86809 * 119.99917 * 355.18886 * 6 4 2 9 9 H 1.48494 * 109.47086 * 89.56600 * 8 6 4 10 10 H 1.48493 * 109.47023 * 209.57361 * 8 6 4 11 11 H 1.48506 * 109.46595 * 329.56923 * 8 6 4 12 12 N 1.46899 * 109.47158 * 120.00177 * 2 1 3 13 13 C 1.46901 * 110.99812 * 58.95143 * 12 2 1 14 14 C 1.38576 * 110.99959 * 294.99943 * 12 2 1 15 15 N 1.31217 * 126.47518 * 69.43920 * 14 12 2 16 16 N 1.28524 * 109.86263 * 179.82258 * 15 14 12 17 17 C 1.30292 * 110.05494 * 0.45396 * 16 15 14 18 18 C 1.50697 * 126.35260 * 179.76409 * 17 16 15 19 19 C 1.53006 * 109.47538 * 113.53323 * 18 17 16 20 20 C 1.53002 * 109.47344 * 233.53405 * 18 17 16 21 21 O 1.42899 * 109.47019 * 353.53437 * 18 17 16 22 22 N 1.36450 * 126.47297 * 249.74984 * 14 12 2 23 23 C 1.46497 * 127.13534 * 359.97438 * 22 14 12 24 24 H 1.09002 * 109.46942 * 185.35267 * 1 2 3 25 25 H 1.09001 * 109.46904 * 305.35098 * 1 2 3 26 26 H 1.08992 * 109.47240 * 65.34878 * 1 2 3 27 27 H 0.96996 * 119.99952 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47373 * 54.35200 * 13 12 2 29 29 H 1.09003 * 109.46812 * 174.35311 * 13 12 2 30 30 H 1.08994 * 109.47375 * 294.34964 * 13 12 2 31 31 H 1.09002 * 109.46379 * 67.66603 * 19 18 17 32 32 H 1.08996 * 109.46979 * 187.66410 * 19 18 17 33 33 H 1.08998 * 109.47083 * 307.67067 * 19 18 17 34 34 H 1.09003 * 109.46613 * 59.90324 * 20 18 17 35 35 H 1.08995 * 109.47269 * 179.90713 * 20 18 17 36 36 H 1.08994 * 109.47118 * 299.90976 * 20 18 17 37 37 H 0.96701 * 113.99991 * 60.00306 * 21 18 17 38 38 H 1.09001 * 109.47454 * 92.86878 * 23 22 14 39 39 H 1.09000 * 109.47258 * 212.86911 * 23 22 14 40 40 H 1.08999 * 109.47312 * 332.86410 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 1.3336 -1.1885 -1.9011 6 6 3.3838 -0.7500 -1.5003 7 7 3.8305 -1.4489 -2.5209 8 14 4.5806 0.1890 -0.4160 9 1 5.0216 -0.6811 0.7036 10 1 5.7604 0.5980 -1.2197 11 1 3.9108 1.3968 0.1299 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6698 -0.0024 2.3490 15 7 0.4604 0.1333 2.8397 16 7 0.5025 0.8316 3.9179 17 6 1.7297 1.1882 4.1717 18 6 2.1953 2.0175 5.3406 19 6 3.0680 1.1598 6.2592 20 6 3.0093 3.2079 4.8293 21 8 1.0615 2.4933 6.0687 22 7 2.5170 0.6695 3.1813 23 6 3.9690 0.8063 3.0428 24 1 -0.3633 -1.0232 0.0959 25 1 -0.3633 0.5946 0.8382 26 1 -0.3633 0.4286 -0.9339 27 1 4.7813 -1.4765 -2.7108 28 1 1.7905 -2.5862 0.3190 29 1 1.9849 -2.5957 2.0883 30 1 0.4449 -2.0731 1.3650 31 1 3.9975 0.9099 5.7477 32 1 3.2923 1.7152 7.1698 33 1 2.5359 0.2434 6.5142 34 1 2.3880 3.8180 4.1736 35 1 3.3447 3.8087 5.6747 36 1 3.8749 2.8450 4.2753 37 1 0.4988 1.7913 6.4232 38 1 4.1974 1.7222 2.4978 39 1 4.4259 0.8483 4.0315 40 1 4.3641 -0.0499 2.4961 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121388637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:31 Heat of formation + Delta-G solvation = 49.080781 kcal Electronic energy + Delta-G solvation = -22236.118084 eV Core-core repulsion = 19088.409547 eV Total energy + Delta-G solvation = -3147.708537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.68201 -38.23000 -37.18876 -34.89431 -32.70672 -32.16228 -30.08097 -28.73407 -27.67642 -27.47455 -25.65020 -25.15675 -22.76182 -21.33198 -20.38670 -19.43251 -17.46877 -17.03056 -16.32654 -15.95121 -15.63086 -15.18085 -14.74305 -14.50438 -13.76250 -13.60068 -13.45656 -13.17306 -12.82936 -12.56935 -12.42600 -12.25343 -12.07405 -11.83984 -11.61013 -11.38606 -11.21634 -11.17537 -10.80389 -10.65828 -10.56882 -10.30623 -9.91308 -9.85036 -9.70006 -9.30653 -8.73395 -8.58132 -7.83740 -6.22764 -4.28266 2.04939 2.57554 3.17107 3.23753 3.26501 3.32861 3.90539 4.24970 4.35010 4.46892 4.57199 4.68809 4.71278 5.15929 5.23624 5.28303 5.40213 5.44246 5.47755 5.55039 5.69592 5.78871 5.87886 5.96830 6.13139 6.22464 6.29116 6.40045 6.53185 6.54590 6.74392 6.89747 7.04075 7.20467 7.45445 7.46644 7.65887 8.07574 8.40928 8.81210 9.11518 9.40488 10.86826 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025895 B = 0.007139 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.019865 B = 3921.388205 C = 4523.161240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.042 0.958 4 C -0.507 4.507 5 H 0.080 0.920 6 C 0.085 3.915 7 N -0.887 5.887 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.302 1.302 11 H -0.273 1.273 12 N -0.474 5.474 13 C 0.048 3.952 14 C 0.373 3.627 15 N -0.317 5.317 16 N -0.283 5.283 17 C 0.125 3.875 18 C 0.228 3.772 19 C -0.179 4.179 20 C -0.146 4.146 21 O -0.537 6.537 22 N -0.465 5.465 23 C 0.064 3.936 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.266 0.734 28 H 0.098 0.902 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.386 0.614 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 4.939 15.600 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.077 3.923 3 H 0.060 0.940 4 C -0.545 4.545 5 H 0.098 0.902 6 C -0.120 4.120 7 N -0.524 5.524 8 Si 0.734 3.266 9 H -0.197 1.197 10 H -0.230 1.230 11 H -0.198 1.198 12 N -0.202 5.202 13 C -0.099 4.099 14 C 0.018 3.982 15 N -0.161 5.161 16 N -0.123 5.123 17 C -0.143 4.143 18 C 0.184 3.816 19 C -0.238 4.238 20 C -0.204 4.204 21 O -0.342 6.342 22 N -0.159 5.159 23 C -0.079 4.079 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.018 5.305 15.432 16.443 hybrid contribution 1.238 -0.056 0.338 1.284 sum 3.255 5.249 15.771 16.937 Atomic orbital electron populations 1.22319 0.97936 1.01476 1.00578 1.19951 0.91562 0.94733 0.86065 0.94011 1.20894 0.93143 1.36090 1.04415 0.90199 1.25052 0.98512 0.94082 0.94371 1.69936 1.14816 1.39217 1.28398 0.86467 0.79419 0.80520 0.80227 1.19738 1.23016 1.19819 1.60108 1.59383 1.03121 0.97630 1.22159 0.98103 0.86774 1.02871 1.23260 0.84844 0.96414 0.93657 1.74711 1.17933 1.17497 1.05936 1.73845 1.16015 1.11913 1.10569 1.25361 0.89047 1.04300 0.95640 1.19187 0.86313 0.91342 0.84764 1.22596 1.00325 1.00566 1.00270 1.21919 0.99268 0.96980 1.02201 1.86527 1.38765 1.37243 1.71657 1.46153 1.09156 1.40336 1.20233 1.22412 0.76773 1.05134 1.03580 0.92890 0.93240 0.92971 0.92439 0.88354 0.93798 0.94295 0.91303 0.90279 0.91646 0.91202 0.90481 0.90943 0.76521 0.90338 0.89590 0.87962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 8.34 37.16 0.31 -3.27 16 2 C 0.18 4.23 1.67 -68.86 -0.12 4.12 16 3 H 0.04 1.05 6.67 -51.93 -0.35 0.70 16 4 C -0.51 -13.45 7.71 -34.44 -0.27 -13.71 16 5 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 6 C 0.09 2.31 5.47 -17.82 -0.10 2.21 16 7 N -0.89 -25.58 13.96 55.43 0.77 -24.80 16 8 Si 0.90 21.00 24.66 -169.99 -4.19 16.81 16 9 H -0.27 -5.94 6.10 56.52 0.34 -5.59 16 10 H -0.30 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.27 -6.18 6.38 56.52 0.36 -5.82 16 12 N -0.47 -10.30 3.08 -176.09 -0.54 -10.84 16 13 C 0.05 0.97 8.72 60.07 0.52 1.50 16 14 C 0.37 7.70 6.22 -318.89 -1.98 5.71 16 15 N -0.32 -6.74 9.87 30.31 0.30 -6.44 16 16 N -0.28 -5.51 11.82 32.99 0.39 -5.12 16 17 C 0.12 2.05 6.45 -154.01 -0.99 1.06 16 18 C 0.23 2.80 1.16 -91.77 -0.11 2.69 16 19 C -0.18 -1.68 8.70 37.16 0.32 -1.35 16 20 C -0.15 -1.59 8.67 37.16 0.32 -1.27 16 21 O -0.54 -6.75 12.79 -35.23 -0.45 -7.20 16 22 N -0.46 -8.15 3.21 -121.46 -0.39 -8.54 16 23 C 0.06 0.92 8.60 59.85 0.51 1.43 16 24 H 0.05 1.13 6.23 -51.93 -0.32 0.80 16 25 H 0.05 1.08 6.23 -51.93 -0.32 0.76 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.10 2.13 6.93 -51.93 -0.36 1.77 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.77 6.32 -51.93 -0.33 0.45 16 31 H 0.07 0.59 5.85 -51.93 -0.30 0.28 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.70 5.52 -51.93 -0.29 0.42 16 37 H 0.39 4.01 8.95 45.56 0.41 4.42 16 38 H 0.08 1.08 7.77 -51.93 -0.40 0.68 16 39 H 0.09 0.88 5.16 -51.93 -0.27 0.61 16 40 H 0.10 1.63 5.99 -51.93 -0.31 1.32 16 LS Contribution 307.45 15.07 4.63 4.63 Total: -1.00 -31.31 307.45 -6.08 -37.39 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.03 Total: 4.98 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.57 Total: -0.88 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.53 Total: -55.74 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.45 Total: -7.20 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.19 Total: 16.81 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.31 -6.08 -37.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121388637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.474 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds