Wall clock time and date at job start Mon Mar 30 2020 00:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47204 * 2 1 4 4 C 1.50698 * 109.46563 * 240.00148 * 2 1 3 5 5 H 1.08000 * 120.00665 * 355.16402 * 4 2 1 6 6 C 1.37881 * 119.99776 * 175.17085 * 4 2 1 7 7 N 1.31516 * 120.00234 * 175.19009 * 6 4 2 8 8 Si 1.86809 * 119.99917 * 355.18886 * 6 4 2 9 9 H 1.48494 * 109.47086 * 89.56600 * 8 6 4 10 10 H 1.48493 * 109.47023 * 209.57361 * 8 6 4 11 11 H 1.48506 * 109.46595 * 329.56923 * 8 6 4 12 12 N 1.46899 * 109.47158 * 120.00177 * 2 1 3 13 13 C 1.46901 * 110.99812 * 58.95143 * 12 2 1 14 14 C 1.38576 * 110.99959 * 294.99943 * 12 2 1 15 15 N 1.31217 * 126.47518 * 69.43920 * 14 12 2 16 16 N 1.28524 * 109.86263 * 179.82258 * 15 14 12 17 17 C 1.30292 * 110.05494 * 0.45396 * 16 15 14 18 18 C 1.50697 * 126.35260 * 179.76409 * 17 16 15 19 19 C 1.53006 * 109.47538 * 113.53323 * 18 17 16 20 20 C 1.53002 * 109.47344 * 233.53405 * 18 17 16 21 21 O 1.42899 * 109.47019 * 353.53437 * 18 17 16 22 22 N 1.36450 * 126.47297 * 249.74984 * 14 12 2 23 23 C 1.46497 * 127.13534 * 359.97438 * 22 14 12 24 24 H 1.09002 * 109.46942 * 185.35267 * 1 2 3 25 25 H 1.09001 * 109.46904 * 305.35098 * 1 2 3 26 26 H 1.08992 * 109.47240 * 65.34878 * 1 2 3 27 27 H 0.96996 * 119.99952 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47373 * 54.35200 * 13 12 2 29 29 H 1.09003 * 109.46812 * 174.35311 * 13 12 2 30 30 H 1.08994 * 109.47375 * 294.34964 * 13 12 2 31 31 H 1.09002 * 109.46379 * 67.66603 * 19 18 17 32 32 H 1.08996 * 109.46979 * 187.66410 * 19 18 17 33 33 H 1.08998 * 109.47083 * 307.67067 * 19 18 17 34 34 H 1.09003 * 109.46613 * 59.90324 * 20 18 17 35 35 H 1.08995 * 109.47269 * 179.90713 * 20 18 17 36 36 H 1.08994 * 109.47118 * 299.90976 * 20 18 17 37 37 H 0.96701 * 113.99991 * 60.00306 * 21 18 17 38 38 H 1.09001 * 109.47454 * 92.86878 * 23 22 14 39 39 H 1.09000 * 109.47258 * 212.86911 * 23 22 14 40 40 H 1.08999 * 109.47312 * 332.86410 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 1.3336 -1.1885 -1.9011 6 6 3.3838 -0.7500 -1.5003 7 7 3.8305 -1.4489 -2.5209 8 14 4.5806 0.1890 -0.4160 9 1 5.0216 -0.6811 0.7036 10 1 5.7604 0.5980 -1.2197 11 1 3.9108 1.3968 0.1299 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6698 -0.0024 2.3490 15 7 0.4604 0.1333 2.8397 16 7 0.5025 0.8316 3.9179 17 6 1.7297 1.1882 4.1717 18 6 2.1953 2.0175 5.3406 19 6 3.0680 1.1598 6.2592 20 6 3.0093 3.2079 4.8293 21 8 1.0615 2.4933 6.0687 22 7 2.5170 0.6695 3.1813 23 6 3.9690 0.8063 3.0428 24 1 -0.3633 -1.0232 0.0959 25 1 -0.3633 0.5946 0.8382 26 1 -0.3633 0.4286 -0.9339 27 1 4.7813 -1.4765 -2.7108 28 1 1.7905 -2.5862 0.3190 29 1 1.9849 -2.5957 2.0883 30 1 0.4449 -2.0731 1.3650 31 1 3.9975 0.9099 5.7477 32 1 3.2923 1.7152 7.1698 33 1 2.5359 0.2434 6.5142 34 1 2.3880 3.8180 4.1736 35 1 3.3447 3.8087 5.6747 36 1 3.8749 2.8450 4.2753 37 1 0.4988 1.7913 6.4232 38 1 4.1974 1.7222 2.4978 39 1 4.4259 0.8483 4.0315 40 1 4.3641 -0.0499 2.4961 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121388637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:30 Heat of formation + Delta-G solvation = 26.973201 kcal Electronic energy + Delta-G solvation = -22237.076741 eV Core-core repulsion = 19088.409547 eV Total energy + Delta-G solvation = -3148.667194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.09842 -39.47752 -38.64493 -36.18365 -34.64075 -33.26574 -31.83177 -30.19558 -28.74351 -28.39921 -27.55567 -26.88533 -23.93185 -22.97625 -21.49229 -21.13307 -19.04780 -18.61866 -17.66228 -17.39953 -17.11025 -16.50540 -16.03224 -15.68798 -15.45222 -15.18920 -14.82528 -14.45197 -14.24718 -13.83802 -13.59864 -13.31494 -13.30537 -13.13019 -12.93809 -12.81027 -12.73809 -12.54510 -12.43344 -12.15909 -12.06227 -11.74889 -11.62868 -11.39828 -11.29653 -11.05085 -10.77249 -10.06888 -9.53639 -8.31224 -6.42619 0.65815 1.23926 1.34337 1.41923 1.51586 1.72669 2.40583 2.77721 2.94845 3.24899 3.27332 3.62656 3.72310 3.87082 4.06215 4.10235 4.26942 4.41032 4.41629 4.52552 4.57040 4.63293 4.69601 4.72686 4.77167 4.81232 4.91694 4.96984 5.02713 5.13228 5.17899 5.18493 5.32723 5.50089 5.65475 5.82655 6.23517 6.49428 6.60989 6.69365 7.30146 7.67012 8.81433 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025895 B = 0.007139 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.019865 B = 3921.388205 C = 4523.161240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.190 3.810 3 H 0.031 0.969 4 C -0.510 4.510 5 H 0.043 0.957 6 C 0.035 3.965 7 N -0.933 5.933 8 Si 0.960 3.040 9 H -0.247 1.247 10 H -0.305 1.305 11 H -0.263 1.263 12 N -0.474 5.474 13 C 0.055 3.945 14 C 0.350 3.650 15 N -0.339 5.339 16 N -0.316 5.316 17 C 0.149 3.851 18 C 0.224 3.776 19 C -0.173 4.173 20 C -0.147 4.147 21 O -0.546 6.546 22 N -0.463 5.463 23 C 0.052 3.948 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.268 0.732 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.394 0.606 38 H 0.087 0.913 39 H 0.131 0.869 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.311 6.234 18.703 20.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.086 3.914 3 H 0.048 0.952 4 C -0.549 4.549 5 H 0.061 0.939 6 C -0.166 4.166 7 N -0.571 5.571 8 Si 0.787 3.213 9 H -0.171 1.171 10 H -0.233 1.233 11 H -0.188 1.188 12 N -0.201 5.201 13 C -0.092 4.092 14 C -0.007 4.007 15 N -0.182 5.182 16 N -0.156 5.156 17 C -0.121 4.121 18 C 0.180 3.820 19 C -0.230 4.230 20 C -0.204 4.204 21 O -0.353 6.353 22 N -0.156 5.156 23 C -0.089 4.089 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.244 0.756 38 H 0.105 0.895 39 H 0.149 0.851 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.724 6.592 18.560 20.045 hybrid contribution 0.613 -0.430 -0.558 0.934 sum 4.337 6.162 18.003 19.516 Atomic orbital electron populations 1.22191 0.97030 1.01468 1.00510 1.19649 0.92188 0.93631 0.85930 0.95152 1.20903 0.92783 1.35831 1.05350 0.93913 1.25833 1.00268 0.94808 0.95647 1.70059 1.15328 1.41201 1.30542 0.85600 0.76889 0.79806 0.79036 1.17127 1.23284 1.18830 1.59730 1.59340 1.03382 0.97661 1.22084 0.98192 0.86312 1.02596 1.23027 0.85552 0.98053 0.94074 1.74601 1.18785 1.18087 1.06759 1.73793 1.17887 1.13303 1.10657 1.26343 0.88029 1.02143 0.95536 1.19643 0.86712 0.91882 0.83770 1.22563 0.99911 1.00005 1.00557 1.21991 0.99065 0.96373 1.03017 1.86522 1.39320 1.37997 1.71420 1.46297 1.10320 1.39403 1.19579 1.22746 0.74863 1.04874 1.06439 0.92874 0.93219 0.92976 0.92286 0.90394 0.91693 0.94419 0.89910 0.87855 0.92172 0.93345 0.87910 0.89449 0.75631 0.89477 0.85071 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.77 8.34 71.98 0.60 -6.17 16 2 C 0.19 9.00 1.67 44.17 0.07 9.07 16 3 H 0.03 1.51 6.67 -2.39 -0.02 1.50 16 4 C -0.51 -27.83 7.71 25.60 0.20 -27.63 16 5 H 0.04 2.58 7.99 -2.91 -0.02 2.56 16 6 C 0.04 1.95 5.47 84.66 0.46 2.41 16 7 N -0.93 -55.14 13.96 21.45 0.30 -54.84 16 8 Si 0.96 42.62 24.66 68.60 1.69 44.31 16 9 H -0.25 -9.90 6.10 99.48 0.61 -9.30 16 10 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.26 -11.18 6.38 99.48 0.63 -10.55 16 12 N -0.47 -20.20 3.08 -711.02 -2.19 -22.38 16 13 C 0.06 2.23 8.72 127.69 1.11 3.34 16 14 C 0.35 13.91 6.22 260.12 1.62 15.52 16 15 N -0.34 -14.12 9.87 -58.01 -0.57 -14.69 16 16 N -0.32 -11.88 11.82 -49.54 -0.59 -12.47 16 17 C 0.15 4.51 6.45 137.64 0.89 5.39 16 18 C 0.22 4.67 1.16 -11.54 -0.01 4.66 16 19 C -0.17 -2.39 8.70 71.98 0.63 -1.77 16 20 C -0.15 -2.59 8.67 71.98 0.62 -1.97 16 21 O -0.55 -12.18 12.79 -148.98 -1.90 -14.08 16 22 N -0.46 -14.91 3.21 -538.20 -1.73 -16.64 16 23 C 0.05 1.28 8.60 127.77 1.10 2.38 16 24 H 0.05 2.30 6.23 -2.39 -0.01 2.29 16 25 H 0.05 2.19 6.23 -2.39 -0.01 2.17 16 26 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 28 H 0.08 3.45 6.93 -2.39 -0.02 3.43 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.04 1.51 6.32 -2.39 -0.02 1.49 16 31 H 0.08 0.92 5.85 -2.39 -0.01 0.91 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.26 5.52 -2.39 -0.01 1.25 16 37 H 0.39 7.28 8.95 -74.06 -0.66 6.61 16 38 H 0.09 2.02 7.77 -2.39 -0.02 2.00 16 39 H 0.13 1.95 5.16 -2.39 -0.01 1.94 16 40 H 0.09 2.48 5.99 -2.39 -0.01 2.46 16 Total: -1.00 -69.38 307.45 2.53 -66.85 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.23 Total: 18.69 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 7.29 Total: 5.24 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -4.77 Total: -121.02 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.90 Total: -14.08 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.69 Total: 44.31 kcal Total: -69.38 2.53 -66.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121388637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.826 kcal (2) G-P(sol) polarization free energy of solvation -69.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds