Wall clock time and date at job start Mon Mar 30 2020 00:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47206 * 2 1 4 4 H 1.08998 * 109.47294 * 304.99934 * 3 2 1 5 5 O 1.42907 * 109.46911 * 65.00090 * 3 2 1 6 6 C 1.50705 * 109.47284 * 184.99782 * 3 2 1 7 7 N 1.30288 * 126.34613 * 284.97432 * 6 3 2 8 8 N 1.28534 * 110.05441 * 180.02562 * 7 6 3 9 9 C 1.31224 * 109.85447 * 0.02562 * 8 7 6 10 10 N 1.38578 * 126.46863 * 180.02562 * 9 8 7 11 11 C 1.46900 * 110.99632 * 236.06831 * 10 9 8 12 12 C 1.46902 * 111.00020 * 0.02562 * 10 9 8 13 13 H 1.08999 * 109.46905 * 55.00380 * 12 10 9 14 14 C 1.52998 * 109.47094 * 295.00175 * 12 10 9 15 15 C 1.50704 * 109.46842 * 175.00123 * 12 10 9 16 16 H 1.07997 * 120.00265 * 359.97438 * 15 12 10 17 17 C 1.37880 * 119.99922 * 179.97438 * 15 12 10 18 18 N 1.31512 * 119.99896 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00090 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46885 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47280 * 119.99740 * 19 17 15 22 22 H 1.48494 * 109.46840 * 240.00195 * 19 17 15 23 23 N 1.36449 * 107.05559 * 359.97438 * 9 8 7 24 24 C 1.46504 * 127.13779 * 180.02562 * 23 9 8 25 25 H 1.08997 * 109.47353 * 59.99805 * 1 2 3 26 26 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47548 * 300.00198 * 1 2 3 28 28 H 1.09000 * 109.47681 * 240.00187 * 2 1 3 29 29 H 1.09004 * 109.47425 * 119.99532 * 2 1 3 30 30 H 0.96696 * 114.00259 * 60.00409 * 5 3 2 31 31 H 1.08990 * 109.47401 * 60.00100 * 11 10 9 32 32 H 1.09007 * 109.46753 * 180.02562 * 11 10 9 33 33 H 1.09003 * 109.46909 * 299.99309 * 11 10 9 34 34 H 1.09005 * 109.47017 * 300.00066 * 14 12 10 35 35 H 1.08992 * 109.47380 * 59.99835 * 14 12 10 36 36 H 1.09001 * 109.46899 * 180.02562 * 14 12 10 37 37 H 0.96996 * 119.99932 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.47056 * 270.00633 * 24 23 9 39 39 H 1.09000 * 109.47012 * 30.00202 * 24 23 9 40 40 H 1.08996 * 109.47303 * 150.00084 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5419 1.4443 -0.1238 7 7 4.3944 1.1448 0.8148 8 7 5.5955 1.2500 0.3694 9 6 5.5732 1.6260 -0.8877 10 7 6.6733 1.8433 -1.7020 11 6 6.6516 3.1999 -2.2651 12 6 7.9247 1.5955 -0.9736 13 1 7.9065 0.5907 -0.5514 14 6 8.0700 2.6198 0.1536 15 6 9.0904 1.7215 -1.9204 16 1 8.9188 1.9613 -2.9593 17 6 10.3760 1.5308 -1.4602 18 7 10.5851 1.2394 -0.1949 19 14 11.8210 1.6877 -2.6335 20 1 11.3217 2.0202 -3.9919 21 1 12.7274 2.7651 -2.1613 22 1 12.5625 0.4020 -2.6803 23 7 4.2625 1.7615 -1.2417 24 6 3.7363 2.1633 -2.5486 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0141 1.6543 2.0139 31 1 6.6664 3.9296 -1.4557 32 1 7.5256 3.3436 -2.9004 33 1 5.7464 3.3328 -2.8577 34 1 8.0882 3.6246 -0.2686 35 1 7.2269 2.5287 0.8383 36 1 8.9988 2.4362 0.6938 37 1 11.4895 1.1048 0.1288 38 1 3.6284 3.2476 -2.5792 39 1 4.4249 1.8446 -3.3311 40 1 2.7642 1.6968 -2.7080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121434731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:39 Heat of formation + Delta-G solvation = 42.850804 kcal Electronic energy + Delta-G solvation = -21439.259365 eV Core-core repulsion = 18291.280676 eV Total energy + Delta-G solvation = -3147.978689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.55760 -37.97244 -37.12380 -34.74632 -33.01803 -32.70795 -29.89945 -28.72935 -27.69521 -26.42504 -25.20910 -24.90044 -22.38857 -21.61722 -20.56992 -19.47262 -17.21654 -16.53353 -16.20331 -15.89738 -15.67706 -15.28510 -15.02305 -14.53908 -13.95423 -13.45658 -13.38694 -13.19163 -13.05891 -12.52909 -12.41578 -12.25383 -11.60368 -11.50485 -11.25456 -11.18986 -11.11986 -10.95506 -10.82929 -10.64193 -10.39547 -10.19439 -10.08545 -9.82640 -9.75297 -9.04884 -8.91026 -8.43571 -7.40004 -6.06187 -4.13719 2.14815 2.61688 3.26516 3.33422 3.34543 3.37204 4.18978 4.31513 4.40304 4.58393 4.65256 4.75514 4.78186 5.08850 5.14746 5.25362 5.26700 5.35093 5.51484 5.58585 5.71057 5.77275 5.90397 5.98393 6.06539 6.18299 6.29693 6.44281 6.77794 6.91515 7.06668 7.17909 7.42858 7.47775 7.61212 7.71203 7.93800 8.24790 8.40630 8.87904 9.30370 9.51055 11.00263 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040093 B = 0.004489 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.209016 B = 6235.367019 C = 6492.714477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.149 4.149 3 C 0.211 3.789 4 H 0.106 0.894 5 O -0.548 6.548 6 C 0.108 3.892 7 N -0.277 5.277 8 N -0.314 5.314 9 C 0.389 3.611 10 N -0.450 5.450 11 C 0.029 3.971 12 C 0.227 3.773 13 H 0.055 0.945 14 C -0.172 4.172 15 C -0.515 4.515 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.883 5.883 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 N -0.488 5.488 24 C 0.077 3.923 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.387 0.613 31 H 0.035 0.965 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.021 0.979 35 H 0.037 0.963 36 H 0.091 0.909 37 H 0.262 0.738 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.419 1.477 -3.822 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.148 3.852 4 H 0.124 0.876 5 O -0.352 6.352 6 C -0.161 4.161 7 N -0.118 5.118 8 N -0.159 5.159 9 C 0.034 3.966 10 N -0.174 5.174 11 C -0.118 4.118 12 C 0.124 3.876 13 H 0.073 0.927 14 C -0.231 4.231 15 C -0.554 4.554 16 H 0.082 0.918 17 C -0.139 4.139 18 N -0.521 5.521 19 Si 0.728 3.272 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 N -0.187 5.187 24 C -0.066 4.066 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.237 0.763 31 H 0.054 0.946 32 H 0.115 0.885 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.024 1.107 -3.167 17.351 hybrid contribution 0.850 0.524 -1.118 1.499 sum -16.173 1.630 -4.284 16.811 Atomic orbital electron populations 1.21707 0.94542 1.01758 1.02404 1.22203 0.96849 0.95856 1.03884 1.19935 0.82458 0.93922 0.88853 0.87588 1.86512 1.75397 1.57686 1.15654 1.25323 0.97758 1.08150 0.84823 1.73800 0.95970 1.17040 1.24990 1.74862 1.12262 1.23963 1.04829 1.23396 0.83470 0.99347 0.90401 1.59315 1.01204 1.25307 1.31524 1.22465 1.02599 0.87287 0.99434 1.19405 0.80837 0.96831 0.90576 0.92681 1.22405 1.03197 0.97495 0.99985 1.21060 0.89899 1.49088 0.95361 0.91752 1.24900 0.98786 0.94966 0.95242 1.69928 1.21297 1.47232 1.13651 0.86414 0.82224 0.77714 0.80872 1.19754 1.21019 1.20928 1.46027 1.06119 1.54382 1.12143 1.22047 1.00766 1.01183 0.82614 0.92791 0.92499 0.91788 0.91035 0.90418 0.76347 0.94637 0.88514 0.93258 0.95955 0.94420 0.89001 0.92767 0.90657 0.88582 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.81 37.15 0.36 -0.79 16 2 C -0.15 -1.48 5.59 -26.73 -0.15 -1.63 16 3 C 0.21 2.46 3.31 -27.88 -0.09 2.36 16 4 H 0.11 1.04 7.28 -51.93 -0.38 0.66 16 5 O -0.55 -6.68 12.86 -35.23 -0.45 -7.13 16 6 C 0.11 1.74 6.93 -154.02 -1.07 0.67 16 7 N -0.28 -5.57 12.10 32.99 0.40 -5.17 16 8 N -0.31 -7.26 9.32 30.31 0.28 -6.98 16 9 C 0.39 8.14 6.75 -318.87 -2.15 5.99 16 10 N -0.45 -9.78 4.80 -176.08 -0.85 -10.63 16 11 C 0.03 0.54 8.60 60.06 0.52 1.05 16 12 C 0.23 5.85 2.03 -68.86 -0.14 5.71 16 13 H 0.06 1.62 7.95 -51.93 -0.41 1.21 16 14 C -0.17 -4.38 8.26 37.16 0.31 -4.08 16 15 C -0.52 -13.76 7.88 -34.44 -0.27 -14.03 16 16 H 0.06 1.67 6.77 -52.49 -0.36 1.31 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 18 N -0.88 -25.17 11.32 55.43 0.63 -24.54 16 19 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 N -0.49 -7.99 3.21 -121.46 -0.39 -8.38 16 24 C 0.08 0.84 9.13 59.85 0.55 1.39 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.39 4.15 8.97 45.56 0.41 4.55 16 31 H 0.04 0.67 6.51 -51.93 -0.34 0.34 16 32 H 0.10 1.82 6.42 -51.93 -0.33 1.49 16 33 H 0.05 0.71 5.41 -51.93 -0.28 0.43 16 34 H 0.02 0.53 6.48 -51.93 -0.34 0.19 16 35 H 0.04 0.95 5.88 -51.93 -0.31 0.65 16 36 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 38 H 0.07 0.70 7.85 -51.93 -0.41 0.29 16 39 H 0.10 1.06 7.57 -51.93 -0.39 0.66 16 40 H 0.08 0.65 7.51 -51.93 -0.39 0.26 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -32.29 317.43 -7.92 -40.21 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.07 Total: 3.73 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.23 Total: -1.70 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.07 Total: -55.69 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.45 Total: -7.13 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.29 -7.92 -40.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121434731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.062 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds