Wall clock time and date at job start Mon Mar 30 2020 00:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47206 * 2 1 4 4 H 1.08998 * 109.47294 * 304.99934 * 3 2 1 5 5 O 1.42907 * 109.46911 * 65.00090 * 3 2 1 6 6 C 1.50705 * 109.47284 * 184.99782 * 3 2 1 7 7 N 1.30288 * 126.34613 * 284.97432 * 6 3 2 8 8 N 1.28534 * 110.05441 * 180.02562 * 7 6 3 9 9 C 1.31224 * 109.85447 * 0.02562 * 8 7 6 10 10 N 1.38578 * 126.46863 * 180.02562 * 9 8 7 11 11 C 1.46900 * 110.99632 * 236.06831 * 10 9 8 12 12 C 1.46902 * 111.00020 * 0.02562 * 10 9 8 13 13 H 1.08999 * 109.46905 * 55.00380 * 12 10 9 14 14 C 1.52998 * 109.47094 * 295.00175 * 12 10 9 15 15 C 1.50704 * 109.46842 * 175.00123 * 12 10 9 16 16 H 1.07997 * 120.00265 * 359.97438 * 15 12 10 17 17 C 1.37880 * 119.99922 * 179.97438 * 15 12 10 18 18 N 1.31512 * 119.99896 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00090 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46885 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47280 * 119.99740 * 19 17 15 22 22 H 1.48494 * 109.46840 * 240.00195 * 19 17 15 23 23 N 1.36449 * 107.05559 * 359.97438 * 9 8 7 24 24 C 1.46504 * 127.13779 * 180.02562 * 23 9 8 25 25 H 1.08997 * 109.47353 * 59.99805 * 1 2 3 26 26 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47548 * 300.00198 * 1 2 3 28 28 H 1.09000 * 109.47681 * 240.00187 * 2 1 3 29 29 H 1.09004 * 109.47425 * 119.99532 * 2 1 3 30 30 H 0.96696 * 114.00259 * 60.00409 * 5 3 2 31 31 H 1.08990 * 109.47401 * 60.00100 * 11 10 9 32 32 H 1.09007 * 109.46753 * 180.02562 * 11 10 9 33 33 H 1.09003 * 109.46909 * 299.99309 * 11 10 9 34 34 H 1.09005 * 109.47017 * 300.00066 * 14 12 10 35 35 H 1.08992 * 109.47380 * 59.99835 * 14 12 10 36 36 H 1.09001 * 109.46899 * 180.02562 * 14 12 10 37 37 H 0.96996 * 119.99932 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.47056 * 270.00633 * 24 23 9 39 39 H 1.09000 * 109.47012 * 30.00202 * 24 23 9 40 40 H 1.08996 * 109.47303 * 150.00084 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5419 1.4443 -0.1238 7 7 4.3944 1.1448 0.8148 8 7 5.5955 1.2500 0.3694 9 6 5.5732 1.6260 -0.8877 10 7 6.6733 1.8433 -1.7020 11 6 6.6516 3.1999 -2.2651 12 6 7.9247 1.5955 -0.9736 13 1 7.9065 0.5907 -0.5514 14 6 8.0700 2.6198 0.1536 15 6 9.0904 1.7215 -1.9204 16 1 8.9188 1.9613 -2.9593 17 6 10.3760 1.5308 -1.4602 18 7 10.5851 1.2394 -0.1949 19 14 11.8210 1.6877 -2.6335 20 1 11.3217 2.0202 -3.9919 21 1 12.7274 2.7651 -2.1613 22 1 12.5625 0.4020 -2.6803 23 7 4.2625 1.7615 -1.2417 24 6 3.7363 2.1633 -2.5486 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0141 1.6543 2.0139 31 1 6.6664 3.9296 -1.4557 32 1 7.5256 3.3436 -2.9004 33 1 5.7464 3.3328 -2.8577 34 1 8.0882 3.6246 -0.2686 35 1 7.2269 2.5287 0.8383 36 1 8.9988 2.4362 0.6938 37 1 11.4895 1.1048 0.1288 38 1 3.6284 3.2476 -2.5792 39 1 4.4249 1.8446 -3.3311 40 1 2.7642 1.6968 -2.7080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121434731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:38 Heat of formation + Delta-G solvation = 20.336961 kcal Electronic energy + Delta-G solvation = -21440.235638 eV Core-core repulsion = 18291.280676 eV Total energy + Delta-G solvation = -3148.954963 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.98208 -39.31978 -38.46702 -36.06579 -34.77155 -33.74218 -31.38768 -30.53480 -28.82817 -27.58449 -27.20448 -26.37313 -23.63086 -22.99014 -21.78103 -21.12723 -18.46250 -18.25062 -17.56721 -17.26664 -17.10229 -16.64862 -16.18820 -16.07616 -15.43502 -15.04234 -14.54639 -14.31525 -14.16489 -13.90649 -13.51127 -13.29987 -13.08254 -13.05456 -12.94672 -12.70476 -12.56368 -12.39798 -12.17076 -12.10504 -11.97208 -11.87365 -11.47031 -11.28847 -11.10321 -10.90066 -10.60852 -10.51849 -9.03749 -8.13239 -6.28617 0.79412 1.33163 1.44699 1.46289 1.58115 1.85067 2.41694 2.97247 3.16421 3.21376 3.45196 3.70116 3.86902 3.93915 4.09767 4.25197 4.32053 4.41586 4.47580 4.53638 4.61173 4.68105 4.79660 4.86144 4.96676 4.98005 5.06830 5.11358 5.13372 5.24904 5.43670 5.44146 5.58428 5.59543 5.84166 6.03409 6.19113 6.55542 6.56102 6.81010 7.40485 7.83571 8.93837 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040093 B = 0.004489 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.209016 B = 6235.367019 C = 6492.714477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.144 4.144 3 C 0.213 3.787 4 H 0.138 0.862 5 O -0.553 6.553 6 C 0.133 3.867 7 N -0.319 5.319 8 N -0.367 5.367 9 C 0.367 3.633 10 N -0.453 5.453 11 C 0.032 3.968 12 C 0.240 3.760 13 H 0.004 0.996 14 C -0.153 4.153 15 C -0.525 4.525 16 H 0.073 0.927 17 C 0.012 3.988 18 N -0.919 5.919 19 Si 0.971 3.029 20 H -0.258 1.258 21 H -0.281 1.281 22 H -0.284 1.284 23 N -0.480 5.480 24 C 0.061 3.939 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.392 0.608 31 H 0.023 0.977 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.030 0.970 35 H 0.031 0.969 36 H 0.063 0.937 37 H 0.263 0.737 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.591 2.367 -6.258 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.182 4.182 3 C 0.151 3.849 4 H 0.156 0.844 5 O -0.358 6.358 6 C -0.137 4.137 7 N -0.159 5.159 8 N -0.211 5.211 9 C 0.010 3.990 10 N -0.176 5.176 11 C -0.115 4.115 12 C 0.134 3.866 13 H 0.022 0.978 14 C -0.212 4.212 15 C -0.563 4.563 16 H 0.091 0.909 17 C -0.188 4.188 18 N -0.558 5.558 19 Si 0.796 3.204 20 H -0.182 1.182 21 H -0.207 1.207 22 H -0.210 1.210 23 N -0.177 5.177 24 C -0.079 4.079 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.242 0.758 31 H 0.042 0.958 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.239 2.009 -5.624 20.145 hybrid contribution 1.349 0.234 -0.334 1.410 sum -17.890 2.243 -5.957 18.989 Atomic orbital electron populations 1.21669 0.92467 1.02584 1.03060 1.22154 0.98445 0.94335 1.03311 1.20372 0.79258 0.95587 0.89689 0.84424 1.86501 1.75105 1.58124 1.16092 1.26342 0.99335 1.04248 0.83749 1.73697 0.95719 1.19714 1.26723 1.74708 1.14356 1.25321 1.06737 1.23253 0.84930 1.00615 0.90248 1.59180 1.00046 1.27309 1.31089 1.22551 1.04591 0.85193 0.99170 1.18949 0.83030 0.94016 0.90634 0.97759 1.22169 1.01324 0.97946 0.99755 1.21355 0.90401 1.48735 0.95804 0.90876 1.25805 1.01703 0.94508 0.96755 1.70091 1.21851 1.48213 1.15663 0.85314 0.78470 0.77462 0.79202 1.18209 1.20673 1.21008 1.46270 1.04269 1.53221 1.13933 1.22561 1.02473 1.03147 0.79761 0.91204 0.91659 0.92038 0.90877 0.91878 0.75815 0.95826 0.89087 0.88844 0.95113 0.94984 0.91868 0.92813 0.88302 0.88499 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.81 71.98 0.71 -1.04 16 2 C -0.14 -2.49 5.59 30.59 0.17 -2.32 16 3 C 0.21 4.35 3.31 29.85 0.10 4.45 16 4 H 0.14 1.99 7.28 -2.39 -0.02 1.97 16 5 O -0.55 -12.29 12.86 -148.98 -1.92 -14.21 16 6 C 0.13 4.13 6.93 137.64 0.95 5.08 16 7 N -0.32 -13.04 12.10 -49.54 -0.60 -13.64 16 8 N -0.37 -17.58 9.32 -58.00 -0.54 -18.12 16 9 C 0.37 15.44 6.75 260.11 1.76 17.20 16 10 N -0.45 -19.81 4.80 -710.99 -3.42 -23.22 16 11 C 0.03 1.11 8.60 127.69 1.10 2.21 16 12 C 0.24 12.80 2.03 44.17 0.09 12.89 16 13 H 0.00 0.28 7.95 -2.39 -0.02 0.26 16 14 C -0.15 -8.14 8.26 71.98 0.59 -7.55 16 15 C -0.52 -28.40 7.88 25.60 0.20 -28.19 16 16 H 0.07 3.75 6.77 -2.91 -0.02 3.73 16 17 C 0.01 0.64 5.30 84.66 0.45 1.09 16 18 N -0.92 -54.19 11.32 21.45 0.24 -53.95 16 19 Si 0.97 42.85 29.54 68.60 2.03 44.88 16 20 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 N -0.48 -14.78 3.21 -538.17 -1.73 -16.51 16 24 C 0.06 1.08 9.13 127.77 1.17 2.25 16 25 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.81 7.82 -2.38 -0.02 0.79 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.39 8.03 8.97 -74.06 -0.66 7.36 16 31 H 0.02 0.87 6.51 -2.39 -0.02 0.86 16 32 H 0.09 3.30 6.42 -2.38 -0.02 3.29 16 33 H 0.09 2.42 5.41 -2.39 -0.01 2.40 16 34 H 0.03 1.52 6.48 -2.38 -0.02 1.50 16 35 H 0.03 1.70 5.88 -2.39 -0.01 1.69 16 36 H 0.06 3.71 6.07 -2.39 -0.01 3.70 16 37 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.10 1.35 7.85 -2.38 -0.02 1.33 16 39 H 0.10 1.77 7.57 -2.39 -0.02 1.75 16 40 H 0.12 1.24 7.51 -2.39 -0.02 1.22 16 Total: -1.00 -74.11 317.43 1.75 -72.36 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.39 Total: 16.35 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 7.29 Total: 6.06 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -6.04 Total: -125.44 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.92 Total: -14.21 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -74.11 1.75 -72.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121434731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.702 kcal (2) G-P(sol) polarization free energy of solvation -74.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds