Wall clock time and date at job start Mon Mar 30 2020 00:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47210 * 2 1 4 4 C 1.36734 * 127.13591 * 270.17755 * 3 2 1 5 5 C 1.50708 * 126.34901 * 359.96589 * 4 3 2 6 6 C 1.53001 * 109.47230 * 270.28635 * 5 4 3 7 7 C 1.52993 * 109.47195 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47261 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99961 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00415 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99791 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00348 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.46962 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46783 * 120.00102 * 12 10 8 15 15 H 1.48491 * 109.47144 * 240.00001 * 12 10 8 16 16 N 1.30293 * 107.30429 * 180.23232 * 4 3 2 17 17 N 1.28528 * 110.05209 * 359.77172 * 16 4 3 18 18 C 1.31218 * 109.86134 * 0.02562 * 17 16 4 19 19 N 1.38575 * 126.47058 * 179.97438 * 18 17 16 20 20 C 1.46892 * 111.00397 * 340.02656 * 19 18 17 21 21 O 1.46304 * 110.99945 * 103.97932 * 19 18 17 22 22 C 1.42905 * 113.99907 * 119.99568 * 21 19 18 23 23 H 1.08994 * 109.47318 * 59.99765 * 1 2 3 24 24 H 1.09001 * 109.47553 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46991 * 299.99700 * 1 2 3 26 26 H 1.09004 * 109.46791 * 239.99785 * 2 1 3 27 27 H 1.09000 * 109.47019 * 120.00569 * 2 1 3 28 28 H 1.09005 * 109.46926 * 30.28521 * 5 4 3 29 29 H 1.08995 * 109.46891 * 150.28544 * 5 4 3 30 30 H 1.08997 * 109.47200 * 300.00089 * 6 5 4 31 31 H 1.09007 * 109.46920 * 59.99911 * 6 5 4 32 32 H 1.08997 * 109.47367 * 300.00290 * 7 6 5 33 33 H 1.09007 * 109.47011 * 60.00270 * 7 6 5 34 34 H 0.96998 * 120.00118 * 180.02562 * 11 10 8 35 35 H 1.08997 * 109.47378 * 183.95430 * 20 19 18 36 36 H 1.09006 * 109.47143 * 303.95537 * 20 19 18 37 37 H 1.08999 * 109.47396 * 63.95180 * 20 19 18 38 38 H 1.09001 * 109.46558 * 60.00200 * 22 21 19 39 39 H 1.09001 * 109.47103 * 179.97438 * 22 21 19 40 40 H 1.09000 * 109.47187 * 300.00152 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2903 2.1606 -1.0900 5 6 2.1440 1.7579 -2.5349 6 6 3.4524 1.1350 -3.0258 7 6 3.3036 0.7256 -4.4925 8 6 4.5924 0.1126 -4.9762 9 1 5.4335 0.0234 -4.3045 10 6 4.6981 -0.3345 -6.2761 11 7 3.6741 -0.2255 -7.0942 12 14 6.2960 -1.0938 -6.8759 13 1 7.2868 -1.0998 -5.7699 14 1 6.0447 -2.4876 -7.3224 15 1 6.8263 -0.2981 -8.0119 16 7 2.7049 3.3140 -0.6480 17 7 2.7088 3.3179 0.6372 18 6 2.2939 2.1574 1.0878 19 7 2.1648 1.7884 2.4172 20 6 2.9746 2.6538 3.2850 21 8 0.7613 1.7980 2.8301 22 6 0.2802 0.5312 3.2840 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.3374 1.0309 -2.6296 29 1 1.9126 2.6376 -3.1355 30 1 4.2589 1.8619 -2.9312 31 1 3.6837 0.2553 -2.4251 32 1 2.4971 -0.0015 -4.5867 33 1 3.0720 1.6051 -5.0934 34 1 3.7482 -0.5404 -8.0086 35 1 2.9105 2.2992 4.3136 36 1 4.0135 2.6283 2.9559 37 1 2.6010 3.6762 3.2291 38 1 0.8662 0.2070 4.1439 39 1 -0.7671 0.6222 3.5719 40 1 0.3748 -0.2016 2.4827 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121691756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:13 Heat of formation + Delta-G solvation = 73.128456 kcal Electronic energy + Delta-G solvation = -20831.695689 eV Core-core repulsion = 17685.029937 eV Total energy + Delta-G solvation = -3146.665752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.89942 -37.84149 -35.93562 -34.85417 -34.14670 -32.40541 -30.70089 -29.67948 -27.11098 -26.96985 -25.48751 -24.22022 -23.55779 -21.01688 -20.72648 -20.11474 -18.02224 -17.06317 -16.31264 -16.20983 -15.73814 -15.45559 -14.97925 -14.54010 -14.19067 -14.05109 -13.64836 -13.38803 -13.15138 -12.85284 -12.53078 -12.31768 -12.10511 -12.05694 -11.58373 -11.52521 -11.36997 -10.91482 -10.84165 -10.63143 -10.52650 -10.51104 -10.15184 -9.82038 -9.73145 -9.45016 -9.14241 -8.51601 -8.38003 -6.03014 -4.05253 1.22830 2.15335 2.63866 3.16316 3.29803 3.37712 3.42040 4.31140 4.42954 4.47771 4.56581 4.75321 4.94947 5.00266 5.07779 5.10045 5.16145 5.19375 5.28668 5.33391 5.34135 5.39641 5.47333 5.64573 5.79661 5.84474 5.88447 6.00630 6.09920 6.40707 6.51454 6.58150 6.72484 6.99160 7.08730 7.62483 7.74967 7.96217 8.38536 8.81065 9.01526 9.59224 11.08285 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030617 B = 0.003793 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.309478 B = 7380.297170 C = 7632.203012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.102 3.898 3 N -0.457 5.457 4 C 0.215 3.785 5 C -0.038 4.038 6 C -0.103 4.103 7 C 0.022 3.978 8 C -0.520 4.520 9 H 0.055 0.945 10 C 0.057 3.943 11 N -0.895 5.895 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.283 1.283 16 N -0.288 5.288 17 N -0.291 5.291 18 C 0.311 3.689 19 N -0.286 5.286 20 C 0.033 3.967 21 O -0.253 6.253 22 C 0.027 3.973 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.017 0.983 33 H 0.021 0.979 34 H 0.260 0.740 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 -1.036 20.162 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.021 4.021 3 N -0.152 5.152 4 C -0.052 4.052 5 C -0.078 4.078 6 C -0.142 4.142 7 C -0.015 4.015 8 C -0.559 4.559 9 H 0.074 0.926 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.209 1.209 16 N -0.129 5.129 17 N -0.140 5.140 18 C -0.045 4.045 19 N -0.057 5.057 20 C -0.115 4.115 21 O -0.249 6.249 22 C -0.070 4.070 23 H 0.086 0.914 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.124 0.876 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.350 -0.027 20.151 21.450 hybrid contribution 0.145 -1.307 -0.336 1.357 sum -7.205 -1.334 19.815 21.127 Atomic orbital electron populations 1.22297 0.93846 1.03490 1.03648 1.21960 0.95829 0.78795 1.05524 1.46303 1.49465 1.13792 1.05650 1.25448 0.99502 0.87922 0.92284 1.20428 1.01400 1.02517 0.83425 1.21670 0.93542 0.98848 1.00132 1.19106 0.97268 0.96681 0.88417 1.21255 0.98692 1.39507 0.96401 0.92650 1.25007 0.96432 0.96037 0.96901 1.69965 1.30133 1.47342 1.05988 0.86549 0.83836 0.78886 0.78834 1.19747 1.21040 1.20941 1.74082 1.18940 1.17854 1.02002 1.74538 1.19953 1.15277 1.04277 1.22345 1.06098 0.88618 0.87426 1.64176 0.94791 1.50059 0.96666 1.22558 0.96545 0.96281 0.96094 1.90938 1.17192 1.31282 1.85482 1.22896 0.98763 0.86462 0.98883 0.91424 0.90073 0.91421 0.87601 0.88554 0.90217 0.88216 0.92303 0.93531 0.96465 0.96089 0.93024 0.89707 0.88665 0.92031 0.93149 0.88724 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 9.48 37.16 0.35 -1.24 16 2 C 0.10 1.10 6.37 -4.04 -0.03 1.08 16 3 N -0.46 -6.74 2.81 -114.09 -0.32 -7.06 16 4 C 0.22 3.67 7.32 -154.02 -1.13 2.54 16 5 C -0.04 -0.63 5.43 -27.88 -0.15 -0.78 16 6 C -0.10 -2.06 5.13 -26.73 -0.14 -2.19 16 7 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 8 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 9 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 12 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 16 N -0.29 -5.54 12.18 32.99 0.40 -5.14 16 17 N -0.29 -5.29 11.43 30.31 0.35 -4.95 16 18 C 0.31 4.86 7.48 -318.89 -2.39 2.47 16 19 N -0.29 -3.61 5.09 -68.06 -0.35 -3.96 16 20 C 0.03 0.34 9.60 60.06 0.58 0.92 16 21 O -0.25 -3.03 10.60 -13.92 -0.15 -3.18 16 22 C 0.03 0.21 10.55 101.05 1.07 1.28 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.64 5.73 -51.93 -0.30 0.35 16 26 H 0.11 1.14 7.91 -51.93 -0.41 0.73 16 27 H 0.10 0.91 7.61 -51.93 -0.39 0.51 16 28 H 0.08 1.16 7.95 -51.93 -0.41 0.75 16 29 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.98 8.12 -51.93 -0.42 0.55 16 37 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.38 5.44 -51.93 -0.28 0.10 16 LS Contribution 335.43 15.07 5.05 5.05 Total: -1.00 -33.32 335.43 -8.09 -41.40 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -6.41 Total: -4.18 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -2.38 Total: -8.76 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.82 Total: -46.75 kcal Atomic # 8 Polarization: -3.03 SS G_CDS: -0.15 Total: -3.18 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.32 -8.09 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121691756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.533 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds