Wall clock time and date at job start Mon Mar 30 2020 00:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47210 * 2 1 4 4 C 1.36734 * 127.13591 * 270.17755 * 3 2 1 5 5 C 1.50708 * 126.34901 * 359.96589 * 4 3 2 6 6 C 1.53001 * 109.47230 * 270.28635 * 5 4 3 7 7 C 1.52993 * 109.47195 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47261 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99961 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00415 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99791 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00348 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.46962 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46783 * 120.00102 * 12 10 8 15 15 H 1.48491 * 109.47144 * 240.00001 * 12 10 8 16 16 N 1.30293 * 107.30429 * 180.23232 * 4 3 2 17 17 N 1.28528 * 110.05209 * 359.77172 * 16 4 3 18 18 C 1.31218 * 109.86134 * 0.02562 * 17 16 4 19 19 N 1.38575 * 126.47058 * 179.97438 * 18 17 16 20 20 C 1.46892 * 111.00397 * 340.02656 * 19 18 17 21 21 O 1.46304 * 110.99945 * 103.97932 * 19 18 17 22 22 C 1.42905 * 113.99907 * 119.99568 * 21 19 18 23 23 H 1.08994 * 109.47318 * 59.99765 * 1 2 3 24 24 H 1.09001 * 109.47553 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46991 * 299.99700 * 1 2 3 26 26 H 1.09004 * 109.46791 * 239.99785 * 2 1 3 27 27 H 1.09000 * 109.47019 * 120.00569 * 2 1 3 28 28 H 1.09005 * 109.46926 * 30.28521 * 5 4 3 29 29 H 1.08995 * 109.46891 * 150.28544 * 5 4 3 30 30 H 1.08997 * 109.47200 * 300.00089 * 6 5 4 31 31 H 1.09007 * 109.46920 * 59.99911 * 6 5 4 32 32 H 1.08997 * 109.47367 * 300.00290 * 7 6 5 33 33 H 1.09007 * 109.47011 * 60.00270 * 7 6 5 34 34 H 0.96998 * 120.00118 * 180.02562 * 11 10 8 35 35 H 1.08997 * 109.47378 * 183.95430 * 20 19 18 36 36 H 1.09006 * 109.47143 * 303.95537 * 20 19 18 37 37 H 1.08999 * 109.47396 * 63.95180 * 20 19 18 38 38 H 1.09001 * 109.46558 * 60.00200 * 22 21 19 39 39 H 1.09001 * 109.47103 * 179.97438 * 22 21 19 40 40 H 1.09000 * 109.47187 * 300.00152 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2903 2.1606 -1.0900 5 6 2.1440 1.7579 -2.5349 6 6 3.4524 1.1350 -3.0258 7 6 3.3036 0.7256 -4.4925 8 6 4.5924 0.1126 -4.9762 9 1 5.4335 0.0234 -4.3045 10 6 4.6981 -0.3345 -6.2761 11 7 3.6741 -0.2255 -7.0942 12 14 6.2960 -1.0938 -6.8759 13 1 7.2868 -1.0998 -5.7699 14 1 6.0447 -2.4876 -7.3224 15 1 6.8263 -0.2981 -8.0119 16 7 2.7049 3.3140 -0.6480 17 7 2.7088 3.3179 0.6372 18 6 2.2939 2.1574 1.0878 19 7 2.1648 1.7884 2.4172 20 6 2.9746 2.6538 3.2850 21 8 0.7613 1.7980 2.8301 22 6 0.2802 0.5312 3.2840 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.3374 1.0309 -2.6296 29 1 1.9126 2.6376 -3.1355 30 1 4.2589 1.8619 -2.9312 31 1 3.6837 0.2553 -2.4251 32 1 2.4971 -0.0015 -4.5867 33 1 3.0720 1.6051 -5.0934 34 1 3.7482 -0.5404 -8.0086 35 1 2.9105 2.2992 4.3136 36 1 4.0135 2.6283 2.9559 37 1 2.6010 3.6762 3.2291 38 1 0.8662 0.2070 4.1439 39 1 -0.7671 0.6222 3.5719 40 1 0.3748 -0.2016 2.4827 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121691756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:13 Heat of formation + Delta-G solvation = 54.778830 kcal Electronic energy + Delta-G solvation = -20832.491388 eV Core-core repulsion = 17685.029937 eV Total energy + Delta-G solvation = -3147.461451 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.12961 -38.75344 -37.13825 -36.32535 -35.25545 -34.25563 -31.72012 -31.15140 -28.71006 -27.68406 -26.48383 -25.66950 -24.83442 -22.45925 -21.99814 -21.53064 -18.99710 -18.49085 -18.03776 -17.24353 -16.88654 -16.46142 -16.33019 -15.87132 -15.55186 -15.39997 -14.57452 -14.32455 -14.18583 -14.13063 -13.79147 -13.58118 -13.41329 -13.19041 -12.82529 -12.67818 -12.61692 -12.60155 -12.44150 -12.33523 -11.81742 -11.54110 -11.41651 -11.29787 -11.28258 -11.19080 -10.79743 -10.53004 -9.74607 -8.18263 -6.28047 0.16333 1.03055 1.40792 1.42465 1.45994 1.54643 2.05992 2.42797 3.15619 3.25224 3.41468 3.56759 3.83066 3.96302 4.05493 4.25358 4.31816 4.41728 4.42551 4.48818 4.51756 4.54445 4.57478 4.61240 4.75323 4.80594 4.83584 5.00197 5.01794 5.07232 5.15773 5.18392 5.34641 5.53615 5.61259 5.75478 5.87162 5.98725 6.27335 6.88054 7.40860 7.54017 8.93358 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030617 B = 0.003793 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.309478 B = 7380.297170 C = 7632.203012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 N -0.453 5.453 4 C 0.207 3.793 5 C -0.025 4.025 6 C -0.085 4.085 7 C 0.027 3.973 8 C -0.542 4.542 9 H 0.055 0.945 10 C 0.004 3.996 11 N -0.929 5.929 12 Si 0.959 3.041 13 H -0.266 1.266 14 H -0.276 1.276 15 H -0.280 1.280 16 N -0.323 5.323 17 N -0.326 5.326 18 C 0.321 3.679 19 N -0.284 5.284 20 C 0.031 3.969 21 O -0.266 6.266 22 C 0.018 3.982 23 H 0.055 0.945 24 H 0.110 0.890 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.007 0.993 33 H -0.003 1.003 34 H 0.264 0.736 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.117 0.883 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.962 -2.746 21.685 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.029 4.029 3 N -0.147 5.147 4 C -0.061 4.061 5 C -0.065 4.065 6 C -0.124 4.124 7 C -0.010 4.010 8 C -0.580 4.580 9 H 0.073 0.927 10 C -0.194 4.194 11 N -0.570 5.570 12 Si 0.784 3.216 13 H -0.190 1.190 14 H -0.201 1.201 15 H -0.206 1.206 16 N -0.164 5.164 17 N -0.175 5.175 18 C -0.036 4.036 19 N -0.054 5.054 20 C -0.116 4.116 21 O -0.263 6.263 22 C -0.078 4.078 23 H 0.074 0.926 24 H 0.129 0.871 25 H 0.083 0.917 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.015 0.985 34 H 0.072 0.928 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.564 -1.747 21.688 23.036 hybrid contribution 0.142 -0.832 -0.696 1.094 sum -7.423 -2.579 20.992 22.414 Atomic orbital electron populations 1.22283 0.92254 1.05176 1.02912 1.22334 0.97139 0.76851 1.06555 1.46506 1.48723 1.14771 1.04693 1.25259 1.00126 0.88061 0.92676 1.20209 1.00129 1.02708 0.83412 1.21361 0.94927 0.98853 0.97271 1.18986 0.95845 0.95177 0.91003 1.21681 0.99773 1.39709 0.96876 0.92715 1.25871 0.99899 0.96506 0.97126 1.70075 1.32201 1.48266 1.06422 0.85486 0.79627 0.78179 0.78291 1.19007 1.20109 1.20599 1.73976 1.20114 1.19433 1.02892 1.74451 1.22018 1.17085 1.03950 1.22745 1.04150 0.87953 0.88757 1.64293 0.95937 1.49909 0.95287 1.22680 0.96015 0.95547 0.97372 1.90939 1.16140 1.33701 1.85548 1.23201 0.99996 0.85062 0.99537 0.92590 0.87129 0.91692 0.87372 0.86736 0.87938 0.88591 0.93902 0.92686 0.97413 0.98459 0.92750 0.86530 0.88881 0.93348 0.91808 0.86538 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 9.48 71.98 0.68 -1.95 16 2 C 0.09 1.80 6.37 86.38 0.55 2.35 16 3 N -0.45 -12.86 2.81 -514.86 -1.45 -14.30 16 4 C 0.21 7.03 7.32 137.64 1.01 8.03 16 5 C -0.02 -0.82 5.43 29.85 0.16 -0.66 16 6 C -0.09 -3.42 5.13 30.59 0.16 -3.26 16 7 C 0.03 1.36 4.97 29.84 0.15 1.51 16 8 C -0.54 -30.32 9.11 25.60 0.23 -30.09 16 9 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 10 C 0.00 0.23 5.46 84.65 0.46 0.69 16 11 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16 12 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 N -0.32 -12.67 12.18 -49.53 -0.60 -13.28 16 17 N -0.33 -11.99 11.43 -58.01 -0.66 -12.65 16 18 C 0.32 9.77 7.48 260.12 1.95 11.72 16 19 N -0.28 -6.68 5.09 -369.25 -1.88 -8.56 16 20 C 0.03 0.60 9.60 127.69 1.23 1.82 16 21 O -0.27 -5.78 10.60 -50.17 -0.53 -6.31 16 22 C 0.02 0.23 10.55 113.37 1.20 1.42 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.06 5.73 -2.39 -0.01 1.05 16 26 H 0.11 2.09 7.91 -2.39 -0.02 2.07 16 27 H 0.11 1.82 7.61 -2.39 -0.02 1.80 16 28 H 0.10 2.89 7.95 -2.38 -0.02 2.87 16 29 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 34 H 0.26 14.69 8.31 -92.71 -0.77 13.91 16 35 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 1.84 8.12 -2.38 -0.02 1.82 16 37 H 0.05 1.08 8.05 -2.39 -0.02 1.06 16 38 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 0.66 5.44 -2.39 -0.01 0.64 16 Total: -1.00 -72.28 335.43 5.97 -66.31 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 1.01 Total: 6.26 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 7.77 Total: -8.41 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -4.31 Total: -103.67 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.53 Total: -6.31 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -72.28 5.97 -66.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121691756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.089 kcal (2) G-P(sol) polarization free energy of solvation -72.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds