Wall clock time and date at job start Mon Mar 30 2020 00:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46856 * 2 1 4 4 C 1.52994 * 109.47161 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47249 * 184.32666 * 4 3 2 6 6 C 1.50697 * 115.54725 * 57.76975 * 5 4 3 7 7 O 1.20827 * 120.00023 * 238.72353 * 6 5 4 8 8 O 1.34226 * 120.00289 * 58.72890 * 6 5 4 9 9 C 1.45196 * 117.00546 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47695 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47264 * 300.00521 * 10 9 8 12 12 C 1.53003 * 109.46512 * 60.00075 * 10 9 8 13 13 C 1.50702 * 109.47422 * 179.97438 * 10 9 8 14 14 H 1.07996 * 119.99704 * 356.36142 * 13 10 9 15 15 C 1.37872 * 119.99744 * 176.35801 * 13 10 9 16 16 N 1.31514 * 119.99980 * 200.55724 * 15 13 10 17 17 Si 1.86800 * 120.00276 * 20.56422 * 15 13 10 18 18 H 1.48504 * 109.47079 * 84.35062 * 17 15 13 19 19 H 1.48496 * 109.47356 * 204.34651 * 17 15 13 20 20 H 1.48501 * 109.47301 * 324.35048 * 17 15 13 21 21 C 1.52993 * 117.50025 * 203.44094 * 5 4 3 22 22 C 1.52998 * 117.49707 * 272.10068 * 5 4 3 23 23 H 1.09002 * 109.46775 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47101 * 299.99884 * 1 2 3 25 25 H 1.09002 * 109.47477 * 60.00431 * 1 2 3 26 26 H 1.08999 * 109.47101 * 240.00116 * 2 1 3 27 27 H 1.09002 * 109.47477 * 119.99569 * 2 1 3 28 28 H 1.08996 * 109.47538 * 59.99487 * 3 2 1 29 29 H 1.09002 * 109.46726 * 300.00029 * 3 2 1 30 30 H 1.09002 * 109.47747 * 64.32171 * 4 3 2 31 31 H 1.09005 * 109.47069 * 304.32327 * 4 3 2 32 32 H 1.09009 * 109.47101 * 59.99736 * 9 8 6 33 33 H 1.08997 * 109.47288 * 299.99869 * 9 8 6 34 34 H 1.09005 * 109.47584 * 72.75781 * 11 10 9 35 35 H 1.09000 * 109.47553 * 192.76010 * 11 10 9 36 36 H 1.09008 * 109.47012 * 312.75845 * 11 10 9 37 37 H 1.08996 * 109.47578 * 60.00480 * 12 10 9 38 38 H 1.09001 * 109.46794 * 180.02562 * 12 10 9 39 39 H 1.08996 * 109.47337 * 299.99688 * 12 10 9 40 40 H 0.97001 * 120.00006 * 179.97438 * 16 15 13 41 41 H 1.08999 * 117.50245 * 215.00030 * 21 5 4 42 42 H 1.09004 * 117.50148 * 0.02562 * 21 5 4 43 43 H 1.08999 * 117.49791 * 359.97438 * 22 5 4 44 44 H 1.09009 * 117.49794 * 144.97055 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8811 0.1082 6 6 3.6134 3.6461 1.3198 7 8 2.9940 4.6745 1.1834 8 8 3.8860 3.1851 2.5506 9 6 3.4062 3.9739 3.6713 10 6 3.8088 3.2954 4.9822 11 6 3.1927 1.8962 5.0424 12 6 5.3332 3.1848 5.0518 13 6 3.3113 4.1144 6.1453 14 1 2.8145 5.0569 5.9687 15 6 3.4904 3.6604 7.4347 16 7 2.7373 4.1270 8.4067 17 14 4.8029 2.3827 7.8013 18 1 6.1112 3.0584 7.9944 19 1 4.4414 1.6419 9.0364 20 1 4.8998 1.4323 6.6644 21 6 5.4890 3.1722 -0.4117 22 6 4.2679 3.6642 -1.1927 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6765 1.9563 -0.8900 30 1 3.9330 0.9975 -0.9270 31 1 3.9336 0.8630 0.8479 32 1 2.3200 4.0524 3.6218 33 1 3.8448 4.9708 3.6282 34 1 3.7155 1.2387 4.3477 35 1 3.2844 1.5021 6.0545 36 1 2.1392 1.9510 4.7679 37 1 5.7722 4.1815 5.0090 38 1 5.6200 2.7010 5.9855 39 1 5.6934 2.5926 4.2107 40 1 2.8631 3.8073 9.3138 41 1 6.0787 3.9172 0.1225 42 1 6.0527 2.3391 -0.8318 43 1 4.0286 3.1546 -2.1260 44 1 4.0537 4.7329 -1.1722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122928191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:05 Heat of formation + Delta-G solvation = -76.548764 kcal Electronic energy + Delta-G solvation = -21570.073114 eV Core-core repulsion = 18488.164463 eV Total energy + Delta-G solvation = -3081.908651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.40329 -37.92448 -36.49720 -35.13013 -34.90329 -31.74484 -30.11188 -26.78381 -26.23028 -25.08587 -24.62956 -23.08191 -22.64698 -21.10912 -19.42437 -19.10274 -17.00866 -16.26448 -16.07645 -15.92589 -15.34716 -15.19742 -14.64586 -14.04333 -13.76602 -13.22768 -13.16458 -13.01440 -12.82355 -12.49203 -12.25137 -11.97609 -11.83875 -11.71088 -11.63449 -11.55283 -11.43456 -11.14488 -10.68847 -10.49621 -10.43782 -10.37029 -10.25700 -10.12619 -10.03909 -9.89440 -9.71382 -9.17750 -8.67492 -8.38032 -6.19175 -4.12736 2.47492 3.03377 3.27515 3.36799 3.39907 3.59755 4.36037 4.37156 4.61735 4.72590 4.91754 4.96733 5.00306 5.12265 5.17749 5.35666 5.45392 5.51066 5.64472 5.70009 5.71807 5.81060 5.81925 5.87849 5.91800 5.93804 5.97842 6.08177 6.16338 6.22752 6.28059 6.33537 6.55512 6.61353 6.72600 6.81589 6.89233 7.06750 7.25431 7.45364 7.72479 8.20276 8.41395 8.86627 9.47371 10.93433 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.005287 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.902473 B = 5295.135733 C = 5907.603021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.075 4.075 5 C -0.133 4.133 6 C 0.492 3.508 7 O -0.513 6.513 8 O -0.346 6.346 9 C 0.092 3.908 10 C 0.045 3.955 11 C -0.134 4.134 12 C -0.147 4.147 13 C -0.524 4.524 14 H 0.074 0.926 15 C 0.083 3.917 16 N -0.883 5.883 17 Si 0.876 3.124 18 H -0.283 1.283 19 H -0.303 1.303 20 H -0.246 1.246 21 C -0.153 4.153 22 C -0.147 4.147 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.032 0.968 35 H 0.051 0.949 36 H 0.042 0.958 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.265 0.735 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.703 -7.679 -18.558 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.112 4.112 5 C -0.134 4.134 6 C 0.335 3.665 7 O -0.403 6.403 8 O -0.262 6.262 9 C 0.020 3.980 10 C 0.045 3.955 11 C -0.191 4.191 12 C -0.204 4.204 13 C -0.561 4.561 14 H 0.093 0.907 15 C -0.121 4.121 16 N -0.519 5.519 17 Si 0.707 3.293 18 H -0.211 1.211 19 H -0.231 1.231 20 H -0.171 1.171 21 C -0.190 4.190 22 C -0.184 4.184 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.448 -7.355 -18.335 19.906 hybrid contribution 0.603 -0.345 0.541 0.880 sum 3.050 -7.700 -17.793 19.626 Atomic orbital electron populations 1.21775 0.95898 1.01436 1.01974 1.21506 0.95955 0.96584 1.01957 1.21613 0.94694 0.97050 1.02520 1.21112 0.95831 0.91281 1.02980 1.21021 1.02595 0.97553 0.92218 1.22292 0.76442 0.83123 0.84649 1.90633 1.37871 1.24434 1.87315 1.86484 1.71718 1.53336 1.14665 1.23429 0.98724 0.93657 0.82218 1.18547 0.92416 0.93852 0.90732 1.22146 0.99478 0.97225 1.00262 1.22339 0.98349 1.00300 0.99415 1.20610 1.39452 1.07414 0.88624 0.90747 1.24868 0.95279 0.95840 0.96086 1.70018 1.36063 1.44457 1.01336 0.87429 0.82510 0.82785 0.76575 1.21061 1.23089 1.17127 1.23108 0.89676 1.03745 1.02513 1.23114 1.00650 1.01100 0.93490 0.92875 0.92498 0.92911 0.92209 0.91723 0.91869 0.91823 0.90844 0.90183 0.91766 0.92006 0.94941 0.93040 0.93920 0.93423 0.93915 0.94248 0.92474 0.88146 0.87487 0.87630 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.12 -1.20 5.93 -26.73 -0.16 -1.36 16 3 C -0.12 -1.38 5.08 -26.73 -0.14 -1.51 16 4 C -0.07 -0.81 5.13 -26.73 -0.14 -0.95 16 5 C -0.13 -1.69 2.11 -155.66 -0.33 -2.02 16 6 C 0.49 8.54 6.23 36.00 0.22 8.77 16 7 O -0.51 -10.26 16.29 -18.75 -0.31 -10.56 16 8 O -0.35 -6.59 9.13 -39.25 -0.36 -6.94 16 9 C 0.09 1.99 4.22 37.16 0.16 2.14 16 10 C 0.05 1.06 0.58 -155.66 -0.09 0.97 16 11 C -0.13 -2.95 7.51 37.15 0.28 -2.67 16 12 C -0.15 -3.21 7.58 37.16 0.28 -2.93 16 13 C -0.52 -14.44 8.60 -34.44 -0.30 -14.73 16 14 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.08 2.34 5.18 -17.82 -0.09 2.25 16 16 N -0.88 -26.50 13.96 55.43 0.77 -25.73 16 17 Si 0.88 21.37 22.99 -169.99 -3.91 17.46 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.25 -5.57 4.71 56.52 0.27 -5.30 16 21 C -0.15 -1.58 9.95 -26.70 -0.27 -1.84 16 22 C -0.15 -1.53 9.75 -26.70 -0.26 -1.79 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.89 7.35 -51.93 -0.38 0.50 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.42 8.13 -51.92 -0.42 1.00 16 33 H 0.06 1.35 8.13 -51.93 -0.42 0.92 16 34 H 0.03 0.64 8.00 -51.93 -0.42 0.22 16 35 H 0.05 1.18 4.37 -51.93 -0.23 0.95 16 36 H 0.04 0.91 8.08 -51.92 -0.42 0.49 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.04 0.96 2.44 -51.93 -0.13 0.83 16 39 H 0.04 0.77 7.68 -51.93 -0.40 0.37 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.10 1.22 7.88 -51.92 -0.41 0.81 16 LS Contribution 345.11 15.07 5.20 5.20 Total: -1.00 -30.46 345.11 -7.04 -37.49 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.98 Total: -0.13 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -0.45 Total: -16.79 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.77 Total: -25.73 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.66 Total: -17.51 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -3.91 Total: 17.46 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.46 -7.04 -37.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122928191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.057 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds