Wall clock time and date at job start Mon Mar 30 2020 00:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46856 * 2 1 4 4 C 1.52994 * 109.47161 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47249 * 184.32666 * 4 3 2 6 6 C 1.50697 * 115.54725 * 57.76975 * 5 4 3 7 7 O 1.20827 * 120.00023 * 238.72353 * 6 5 4 8 8 O 1.34226 * 120.00289 * 58.72890 * 6 5 4 9 9 C 1.45196 * 117.00546 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47695 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47264 * 300.00521 * 10 9 8 12 12 C 1.53003 * 109.46512 * 60.00075 * 10 9 8 13 13 C 1.50702 * 109.47422 * 179.97438 * 10 9 8 14 14 H 1.07996 * 119.99704 * 356.36142 * 13 10 9 15 15 C 1.37872 * 119.99744 * 176.35801 * 13 10 9 16 16 N 1.31514 * 119.99980 * 200.55724 * 15 13 10 17 17 Si 1.86800 * 120.00276 * 20.56422 * 15 13 10 18 18 H 1.48504 * 109.47079 * 84.35062 * 17 15 13 19 19 H 1.48496 * 109.47356 * 204.34651 * 17 15 13 20 20 H 1.48501 * 109.47301 * 324.35048 * 17 15 13 21 21 C 1.52993 * 117.50025 * 203.44094 * 5 4 3 22 22 C 1.52998 * 117.49707 * 272.10068 * 5 4 3 23 23 H 1.09002 * 109.46775 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47101 * 299.99884 * 1 2 3 25 25 H 1.09002 * 109.47477 * 60.00431 * 1 2 3 26 26 H 1.08999 * 109.47101 * 240.00116 * 2 1 3 27 27 H 1.09002 * 109.47477 * 119.99569 * 2 1 3 28 28 H 1.08996 * 109.47538 * 59.99487 * 3 2 1 29 29 H 1.09002 * 109.46726 * 300.00029 * 3 2 1 30 30 H 1.09002 * 109.47747 * 64.32171 * 4 3 2 31 31 H 1.09005 * 109.47069 * 304.32327 * 4 3 2 32 32 H 1.09009 * 109.47101 * 59.99736 * 9 8 6 33 33 H 1.08997 * 109.47288 * 299.99869 * 9 8 6 34 34 H 1.09005 * 109.47584 * 72.75781 * 11 10 9 35 35 H 1.09000 * 109.47553 * 192.76010 * 11 10 9 36 36 H 1.09008 * 109.47012 * 312.75845 * 11 10 9 37 37 H 1.08996 * 109.47578 * 60.00480 * 12 10 9 38 38 H 1.09001 * 109.46794 * 180.02562 * 12 10 9 39 39 H 1.08996 * 109.47337 * 299.99688 * 12 10 9 40 40 H 0.97001 * 120.00006 * 179.97438 * 16 15 13 41 41 H 1.08999 * 117.50245 * 215.00030 * 21 5 4 42 42 H 1.09004 * 117.50148 * 0.02562 * 21 5 4 43 43 H 1.08999 * 117.49791 * 359.97438 * 22 5 4 44 44 H 1.09009 * 117.49794 * 144.97055 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8811 0.1082 6 6 3.6134 3.6461 1.3198 7 8 2.9940 4.6745 1.1834 8 8 3.8860 3.1851 2.5506 9 6 3.4062 3.9739 3.6713 10 6 3.8088 3.2954 4.9822 11 6 3.1927 1.8962 5.0424 12 6 5.3332 3.1848 5.0518 13 6 3.3113 4.1144 6.1453 14 1 2.8145 5.0569 5.9687 15 6 3.4904 3.6604 7.4347 16 7 2.7373 4.1270 8.4067 17 14 4.8029 2.3827 7.8013 18 1 6.1112 3.0584 7.9944 19 1 4.4414 1.6419 9.0364 20 1 4.8998 1.4323 6.6644 21 6 5.4890 3.1722 -0.4117 22 6 4.2679 3.6642 -1.1927 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6765 1.9563 -0.8900 30 1 3.9330 0.9975 -0.9270 31 1 3.9336 0.8630 0.8479 32 1 2.3200 4.0524 3.6218 33 1 3.8448 4.9708 3.6282 34 1 3.7155 1.2387 4.3477 35 1 3.2844 1.5021 6.0545 36 1 2.1392 1.9510 4.7679 37 1 5.7722 4.1815 5.0090 38 1 5.6200 2.7010 5.9855 39 1 5.6934 2.5926 4.2107 40 1 2.8631 3.8073 9.3138 41 1 6.0787 3.9172 0.1225 42 1 6.0527 2.3391 -0.8318 43 1 4.0286 3.1546 -2.1260 44 1 4.0537 4.7329 -1.1722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122928191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:05 Heat of formation + Delta-G solvation = -93.013304 kcal Electronic energy + Delta-G solvation = -21570.787070 eV Core-core repulsion = 18488.164463 eV Total energy + Delta-G solvation = -3082.622607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76683 -39.18298 -37.98520 -36.73127 -35.82747 -33.87827 -30.91247 -28.41027 -27.99731 -27.08409 -25.79729 -24.25091 -23.43937 -21.91507 -21.05411 -20.66165 -18.39562 -17.94795 -17.56079 -17.47241 -17.09033 -16.25557 -15.70967 -15.32292 -14.93293 -14.76875 -14.63862 -14.44892 -14.10060 -13.97703 -13.69938 -13.62410 -13.32037 -13.08694 -12.59156 -12.48825 -12.43885 -12.25008 -12.20111 -12.06965 -11.97551 -11.91053 -11.50696 -11.48763 -11.38108 -11.23082 -11.12739 -10.89996 -10.59539 -10.44230 -8.38135 -6.36305 1.12861 1.35231 1.37214 1.48422 1.68412 2.31652 2.69922 2.96850 3.48512 3.67078 3.79745 3.91518 4.01411 4.08785 4.11042 4.20058 4.33185 4.36680 4.54919 4.56455 4.70162 4.73072 4.77524 4.82418 4.84061 4.89335 4.92014 4.95321 5.03495 5.07948 5.08885 5.13190 5.17613 5.19746 5.28588 5.41449 5.41953 5.48437 5.54542 5.64034 5.71899 6.23101 6.64010 6.74769 7.26933 8.78557 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.005287 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.902473 B = 5295.135733 C = 5907.603021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.121 4.121 4 C -0.068 4.068 5 C -0.154 4.154 6 C 0.487 3.513 7 O -0.549 6.549 8 O -0.343 6.343 9 C 0.105 3.895 10 C 0.041 3.959 11 C -0.130 4.130 12 C -0.144 4.144 13 C -0.532 4.532 14 H 0.029 0.971 15 C 0.030 3.970 16 N -0.933 5.933 17 Si 0.935 3.065 18 H -0.277 1.277 19 H -0.306 1.306 20 H -0.211 1.211 21 C -0.136 4.136 22 C -0.137 4.137 23 H 0.064 0.936 24 H 0.036 0.964 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.036 0.964 37 H 0.046 0.954 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.268 0.732 41 H 0.090 0.910 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.977 -10.541 -21.279 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.159 4.159 4 C -0.105 4.105 5 C -0.155 4.155 6 C 0.332 3.668 7 O -0.440 6.440 8 O -0.259 6.259 9 C 0.031 3.969 10 C 0.040 3.960 11 C -0.188 4.188 12 C -0.201 4.201 13 C -0.569 4.569 14 H 0.048 0.952 15 C -0.170 4.170 16 N -0.571 5.571 17 Si 0.762 3.238 18 H -0.204 1.204 19 H -0.234 1.234 20 H -0.135 1.135 21 C -0.173 4.173 22 C -0.174 4.174 23 H 0.083 0.917 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.731 -10.222 -21.090 23.909 hybrid contribution -0.209 0.680 1.311 1.491 sum 4.522 -9.542 -19.779 22.421 Atomic orbital electron populations 1.21800 0.96156 1.02033 1.01337 1.21493 0.95763 0.95555 1.02816 1.21611 0.95640 0.97761 1.00875 1.21146 0.94878 0.89832 1.04618 1.21194 1.05260 0.98428 0.90662 1.23419 0.75380 0.83005 0.85017 1.90615 1.39480 1.26321 1.87568 1.86472 1.71692 1.52787 1.14932 1.22965 0.97453 0.93325 0.83150 1.18491 0.93923 0.93921 0.89633 1.22074 0.99581 0.96617 1.00483 1.22263 0.96445 1.00926 1.00420 1.20850 1.38946 1.06410 0.90705 0.95234 1.25715 0.97103 0.98463 0.95675 1.70145 1.38130 1.46891 1.01941 0.86462 0.79274 0.80816 0.77231 1.20354 1.23422 1.13479 1.23295 0.88636 1.04315 1.01033 1.23254 1.00309 1.00209 0.93616 0.91653 0.94450 0.92296 0.89774 0.92300 0.95734 0.91309 0.87064 0.90794 0.93703 0.93206 0.92017 0.93796 0.94449 0.93533 0.94137 0.91357 0.92319 0.89107 0.83996 0.84323 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.91 71.98 0.71 -2.08 16 2 C -0.12 -2.05 5.93 30.60 0.18 -1.87 16 3 C -0.12 -2.55 5.08 30.59 0.16 -2.40 16 4 C -0.07 -1.23 5.13 30.59 0.16 -1.07 16 5 C -0.15 -3.54 2.11 -52.93 -0.11 -3.65 16 6 C 0.49 16.76 6.23 71.23 0.44 17.21 16 7 O -0.55 -22.57 16.29 21.96 0.36 -22.21 16 8 O -0.34 -12.86 9.13 -51.38 -0.47 -13.33 16 9 C 0.10 4.62 4.22 71.98 0.30 4.92 16 10 C 0.04 1.91 0.58 -52.93 -0.03 1.88 16 11 C -0.13 -5.57 7.51 71.98 0.54 -5.03 16 12 C -0.14 -5.95 7.58 71.98 0.55 -5.41 16 13 C -0.53 -30.35 8.60 25.60 0.22 -30.13 16 14 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 15 C 0.03 1.71 5.18 84.65 0.44 2.15 16 16 N -0.93 -58.00 13.96 21.45 0.30 -57.70 16 17 Si 0.93 43.48 22.99 68.60 1.58 45.05 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.31 -14.32 7.11 99.48 0.71 -13.61 16 20 H -0.21 -8.64 4.71 99.48 0.47 -8.17 16 21 C -0.14 -2.28 9.95 30.62 0.30 -1.97 16 22 C -0.14 -2.44 9.75 30.62 0.30 -2.14 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 28 H 0.02 0.69 7.35 -2.39 -0.02 0.67 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.11 1.24 8.11 -2.39 -0.02 1.22 16 31 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.04 2.10 8.13 -2.38 -0.02 2.09 16 33 H 0.05 2.27 8.13 -2.39 -0.02 2.25 16 34 H 0.06 2.26 8.00 -2.38 -0.02 2.24 16 35 H 0.04 1.92 4.37 -2.39 -0.01 1.91 16 36 H 0.04 1.59 8.08 -2.38 -0.02 1.57 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.69 2.44 -2.39 -0.01 1.68 16 39 H 0.07 2.43 7.68 -2.39 -0.02 2.41 16 40 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.09 1.88 7.88 -2.38 -0.02 1.87 16 Total: -1.00 -69.37 345.11 6.63 -62.74 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.71 Total: 15.04 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 4.16 Total: -29.59 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.30 Total: -57.70 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.11 Total: -35.54 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.58 Total: 45.05 kcal Total: -69.37 6.63 -62.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122928191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.275 kcal (2) G-P(sol) polarization free energy of solvation -69.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds