Wall clock time and date at job start Mon Mar 30 2020 00:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46875 * 2 1 4 4 H 1.08993 * 109.47704 * 54.84757 * 3 2 1 5 5 C 1.53002 * 109.47180 * 174.84971 * 3 2 1 6 6 C 1.50694 * 109.47255 * 200.05847 * 5 3 2 7 7 O 1.20829 * 120.00125 * 7.53967 * 6 5 3 8 8 O 1.34234 * 120.00078 * 187.53266 * 6 5 3 9 9 C 1.45195 * 116.99882 * 183.28677 * 8 6 5 10 10 H 1.09004 * 109.47226 * 19.77097 * 9 8 6 11 11 C 1.50699 * 109.47113 * 139.77221 * 9 8 6 12 12 H 1.08004 * 119.99781 * 359.97438 * 11 9 8 13 13 C 1.37872 * 120.00562 * 180.02562 * 11 9 8 14 14 N 1.31521 * 119.99787 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00377 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.46989 * 60.00212 * 15 13 11 17 17 H 1.48509 * 109.46938 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.46952 * 299.99545 * 15 13 11 19 19 C 1.53000 * 109.47225 * 259.76779 * 9 8 6 20 20 C 1.53006 * 117.49749 * 132.49283 * 19 9 8 21 21 C 1.53005 * 117.49637 * 63.83193 * 19 9 8 22 22 C 1.53008 * 109.46838 * 294.84524 * 3 2 1 23 23 C 1.52999 * 109.46866 * 178.61627 * 22 3 2 24 24 C 1.52997 * 109.47324 * 298.61608 * 22 3 2 25 25 H 1.09000 * 109.47616 * 295.92333 * 1 2 3 26 26 H 1.09004 * 109.47095 * 175.92612 * 1 2 3 27 27 H 1.08995 * 109.47457 * 55.92611 * 1 2 3 28 28 H 1.09005 * 109.46765 * 119.99718 * 2 1 3 29 29 H 1.08997 * 109.46718 * 239.99705 * 2 1 3 30 30 H 1.09003 * 109.46786 * 320.06409 * 5 3 2 31 31 H 1.09009 * 109.46995 * 80.06222 * 5 3 2 32 32 H 0.97002 * 120.00071 * 180.02562 * 14 13 11 33 33 H 1.08994 * 115.55329 * 278.16486 * 19 9 8 34 34 H 1.08995 * 117.49774 * 359.97438 * 20 19 9 35 35 H 1.09000 * 117.49340 * 145.02378 * 20 19 9 36 36 H 1.08998 * 117.49554 * 214.97716 * 21 19 9 37 37 H 1.09001 * 117.49713 * 0.02562 * 21 19 9 38 38 H 1.09000 * 109.47124 * 58.62258 * 22 3 2 39 39 H 1.09000 * 109.47363 * 65.25177 * 23 22 3 40 40 H 1.09007 * 109.47137 * 185.25223 * 23 22 3 41 41 H 1.09007 * 109.47333 * 305.24954 * 23 22 3 42 42 H 1.09001 * 109.47134 * 63.55859 * 24 22 3 43 43 H 1.09002 * 109.46796 * 183.55776 * 24 22 3 44 44 H 1.09001 * 109.47336 * 303.55852 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6033 1.9823 0.8402 5 6 3.5645 1.4445 0.1295 6 6 4.0254 2.7937 0.6174 7 8 3.2151 3.6184 0.9685 8 8 5.3362 3.0794 0.6621 9 6 5.7112 4.3701 1.2114 10 1 4.8922 4.7593 1.8163 11 6 6.9395 4.2128 2.0702 12 1 7.3927 3.2400 2.1914 13 6 7.4841 5.3105 2.7021 14 7 6.9320 6.4951 2.5549 15 14 9.0063 5.1154 3.7672 16 1 10.1223 4.5854 2.9434 17 1 9.3892 6.4353 4.3300 18 1 8.7169 4.1705 4.8756 19 6 6.0089 5.3435 0.0691 20 6 5.3745 6.7339 0.1424 21 6 4.8552 5.7074 -0.8676 22 6 1.6384 2.1253 -1.3091 23 6 2.1184 3.5780 -1.2946 24 6 2.2796 1.3881 -2.4864 25 1 -0.3634 0.4492 0.9242 26 1 -0.3633 -1.0251 -0.0730 27 1 -0.3634 0.5757 -0.8512 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 3.8696 0.6771 0.8409 31 1 4.0120 1.2374 -0.8427 32 1 7.3154 7.2675 2.9992 33 1 7.0054 5.2673 -0.3658 34 1 4.7448 6.9549 1.0041 35 1 5.9536 7.5722 -0.2448 36 1 5.0929 5.8711 -1.9187 37 1 3.8840 5.2537 -0.6698 38 1 0.5537 2.1021 -1.4131 39 1 3.2081 3.6006 -1.2845 40 1 1.7525 4.0904 -2.1844 41 1 1.7363 4.0781 -0.4045 42 1 1.8896 0.3714 -2.5344 43 1 2.0455 1.9112 -3.4136 44 1 3.3606 1.3564 -2.3501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123461712.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:50 Heat of formation + Delta-G solvation = -87.441816 kcal Electronic energy + Delta-G solvation = -22083.626136 eV Core-core repulsion = 19001.245127 eV Total energy + Delta-G solvation = -3082.381009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.04358 -37.86719 -36.16564 -34.75039 -32.59991 -32.32340 -30.23115 -27.77340 -27.00193 -25.03879 -23.09869 -22.33316 -21.19753 -20.44906 -19.19488 -18.37627 -17.03305 -16.43465 -16.26866 -15.47818 -14.86722 -14.67168 -14.36508 -13.98151 -13.60920 -13.48027 -12.88565 -12.75735 -12.52793 -12.16991 -12.03093 -11.71034 -11.51735 -11.34346 -11.24495 -11.11606 -11.04086 -10.95900 -10.63167 -10.46309 -10.30856 -10.21478 -10.14546 -9.96228 -9.81112 -9.41979 -9.35979 -8.96940 -8.57473 -8.38853 -6.11402 -4.19324 3.12592 3.28357 3.32251 3.34351 3.74815 4.37374 4.77433 4.86526 4.90564 5.09625 5.20444 5.21562 5.30903 5.40781 5.53662 5.57044 5.68239 5.77277 5.81316 5.88937 5.92170 5.98883 6.00067 6.05388 6.13405 6.19424 6.20218 6.27195 6.39681 6.42237 6.47664 6.56773 6.64241 6.76550 6.81279 7.05304 7.20738 7.32727 7.47829 7.69801 7.92775 8.18125 8.71899 8.96725 9.45401 10.94720 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.026999 B = 0.005202 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.823250 B = 5381.273062 C = 5985.654664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.077 4.077 4 H 0.088 0.912 5 C -0.120 4.120 6 C 0.453 3.547 7 O -0.517 6.517 8 O -0.356 6.356 9 C 0.246 3.754 10 H 0.051 0.949 11 C -0.530 4.530 12 H 0.066 0.934 13 C 0.069 3.931 14 N -0.873 5.873 15 Si 0.905 3.095 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.112 4.112 20 C -0.120 4.120 21 C -0.232 4.232 22 C -0.089 4.089 23 C -0.152 4.152 24 C -0.155 4.155 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.264 0.736 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.318 -9.368 -7.410 15.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.095 4.095 4 H 0.106 0.894 5 C -0.158 4.158 6 C 0.296 3.704 7 O -0.407 6.407 8 O -0.273 6.273 9 C 0.193 3.807 10 H 0.069 0.931 11 C -0.568 4.568 12 H 0.084 0.916 13 C -0.135 4.135 14 N -0.510 5.510 15 Si 0.732 3.268 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.131 4.131 20 C -0.157 4.157 21 C -0.268 4.268 22 C -0.107 4.107 23 C -0.209 4.209 24 C -0.212 4.212 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.490 -8.874 -7.243 14.875 hybrid contribution 0.962 0.215 0.547 1.127 sum -8.528 -8.660 -6.696 13.876 Atomic orbital electron populations 1.21806 0.95926 1.01171 1.02068 1.21637 0.95950 0.96231 1.02042 1.21140 0.93169 0.95993 0.99243 0.89414 1.21581 0.96840 0.93609 1.03728 1.23249 0.82352 0.89472 0.75297 1.90558 1.54705 1.49768 1.45684 1.86469 1.24077 1.42269 1.74449 1.20172 0.96352 0.74765 0.89374 0.93081 1.20945 1.11534 0.95378 1.28922 0.91560 1.24865 0.97481 0.94874 0.96233 1.70042 1.39760 0.98893 1.42259 0.86454 0.82627 0.77276 0.80439 1.20065 1.21132 1.20122 1.22498 0.94850 0.97871 0.97920 1.22357 1.02408 0.92006 0.98912 1.23304 1.00408 1.07928 0.95211 1.21138 0.99947 0.95654 0.93993 1.22275 1.01819 0.95197 1.01637 1.22024 1.01253 0.99991 0.97912 0.92751 0.93111 0.92424 0.91981 0.91627 0.88546 0.88169 0.92661 0.89614 0.89156 0.90937 0.91132 0.88748 0.91217 0.92300 0.94182 0.90602 0.92650 0.92987 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.76 37.16 0.36 -1.04 16 2 C -0.12 -1.22 5.16 -26.73 -0.14 -1.36 16 3 C -0.08 -0.99 1.69 -90.62 -0.15 -1.14 16 4 H 0.09 1.31 7.22 -51.93 -0.38 0.93 16 5 C -0.12 -1.75 5.10 -27.88 -0.14 -1.89 16 6 C 0.45 9.06 5.58 36.00 0.20 9.26 16 7 O -0.52 -11.25 10.34 -18.75 -0.19 -11.45 16 8 O -0.36 -8.36 9.83 -39.27 -0.39 -8.74 16 9 C 0.25 6.45 2.26 -27.88 -0.06 6.39 16 10 H 0.05 1.49 6.68 -51.93 -0.35 1.14 16 11 C -0.53 -14.78 8.89 -34.44 -0.31 -15.09 16 12 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 13 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 14 N -0.87 -24.24 11.16 55.43 0.62 -23.62 16 15 Si 0.90 21.06 29.54 -169.99 -5.02 16.03 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.11 -2.75 4.54 -90.61 -0.41 -3.16 16 20 C -0.12 -2.76 8.71 -26.68 -0.23 -2.99 16 21 C -0.23 -4.93 10.00 -26.68 -0.27 -5.20 16 22 C -0.09 -1.10 2.53 -90.62 -0.23 -1.33 16 23 C -0.15 -2.32 6.66 37.16 0.25 -2.07 16 24 C -0.15 -1.67 8.55 37.16 0.32 -1.36 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.52 6.36 -51.93 -0.33 0.19 16 28 H 0.06 0.61 8.03 -51.93 -0.42 0.19 16 29 H 0.07 0.60 6.29 -51.93 -0.33 0.27 16 30 H 0.10 1.27 7.90 -51.93 -0.41 0.86 16 31 H 0.10 1.33 5.52 -51.92 -0.29 1.04 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 33 H 0.09 2.17 8.13 -51.93 -0.42 1.74 16 34 H 0.09 2.24 8.07 -51.93 -0.42 1.82 16 35 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.09 2.01 4.26 -51.93 -0.22 1.79 16 38 H 0.07 0.80 6.42 -51.93 -0.33 0.46 16 39 H 0.06 1.01 4.36 -51.93 -0.23 0.78 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 1.31 6.56 -51.93 -0.34 0.97 16 42 H 0.05 0.51 6.54 -51.93 -0.34 0.17 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.68 5.86 -51.93 -0.30 0.38 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -28.71 330.12 -8.10 -36.81 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.18 Total: 5.18 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -0.91 Total: -19.19 kcal Atomic # 7 Polarization: -24.24 SS G_CDS: 0.62 Total: -23.62 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.58 Total: -20.19 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.71 -8.10 -36.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461712.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.634 kcal (2) G-P(sol) polarization free energy of solvation -28.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds