Wall clock time and date at job start Mon Mar 30 2020 00:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46875 * 2 1 4 4 H 1.08993 * 109.47704 * 54.84757 * 3 2 1 5 5 C 1.53002 * 109.47180 * 174.84971 * 3 2 1 6 6 C 1.50694 * 109.47255 * 200.05847 * 5 3 2 7 7 O 1.20829 * 120.00125 * 7.53967 * 6 5 3 8 8 O 1.34234 * 120.00078 * 187.53266 * 6 5 3 9 9 C 1.45195 * 116.99882 * 183.28677 * 8 6 5 10 10 H 1.09004 * 109.47226 * 19.77097 * 9 8 6 11 11 C 1.50699 * 109.47113 * 139.77221 * 9 8 6 12 12 H 1.08004 * 119.99781 * 359.97438 * 11 9 8 13 13 C 1.37872 * 120.00562 * 180.02562 * 11 9 8 14 14 N 1.31521 * 119.99787 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00377 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.46989 * 60.00212 * 15 13 11 17 17 H 1.48509 * 109.46938 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.46952 * 299.99545 * 15 13 11 19 19 C 1.53000 * 109.47225 * 259.76779 * 9 8 6 20 20 C 1.53006 * 117.49749 * 132.49283 * 19 9 8 21 21 C 1.53005 * 117.49637 * 63.83193 * 19 9 8 22 22 C 1.53008 * 109.46838 * 294.84524 * 3 2 1 23 23 C 1.52999 * 109.46866 * 178.61627 * 22 3 2 24 24 C 1.52997 * 109.47324 * 298.61608 * 22 3 2 25 25 H 1.09000 * 109.47616 * 295.92333 * 1 2 3 26 26 H 1.09004 * 109.47095 * 175.92612 * 1 2 3 27 27 H 1.08995 * 109.47457 * 55.92611 * 1 2 3 28 28 H 1.09005 * 109.46765 * 119.99718 * 2 1 3 29 29 H 1.08997 * 109.46718 * 239.99705 * 2 1 3 30 30 H 1.09003 * 109.46786 * 320.06409 * 5 3 2 31 31 H 1.09009 * 109.46995 * 80.06222 * 5 3 2 32 32 H 0.97002 * 120.00071 * 180.02562 * 14 13 11 33 33 H 1.08994 * 115.55329 * 278.16486 * 19 9 8 34 34 H 1.08995 * 117.49774 * 359.97438 * 20 19 9 35 35 H 1.09000 * 117.49340 * 145.02378 * 20 19 9 36 36 H 1.08998 * 117.49554 * 214.97716 * 21 19 9 37 37 H 1.09001 * 117.49713 * 0.02562 * 21 19 9 38 38 H 1.09000 * 109.47124 * 58.62258 * 22 3 2 39 39 H 1.09000 * 109.47363 * 65.25177 * 23 22 3 40 40 H 1.09007 * 109.47137 * 185.25223 * 23 22 3 41 41 H 1.09007 * 109.47333 * 305.24954 * 23 22 3 42 42 H 1.09001 * 109.47134 * 63.55859 * 24 22 3 43 43 H 1.09002 * 109.46796 * 183.55776 * 24 22 3 44 44 H 1.09001 * 109.47336 * 303.55852 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6033 1.9823 0.8402 5 6 3.5645 1.4445 0.1295 6 6 4.0254 2.7937 0.6174 7 8 3.2151 3.6184 0.9685 8 8 5.3362 3.0794 0.6621 9 6 5.7112 4.3701 1.2114 10 1 4.8922 4.7593 1.8163 11 6 6.9395 4.2128 2.0702 12 1 7.3927 3.2400 2.1914 13 6 7.4841 5.3105 2.7021 14 7 6.9320 6.4951 2.5549 15 14 9.0063 5.1154 3.7672 16 1 10.1223 4.5854 2.9434 17 1 9.3892 6.4353 4.3300 18 1 8.7169 4.1705 4.8756 19 6 6.0089 5.3435 0.0691 20 6 5.3745 6.7339 0.1424 21 6 4.8552 5.7074 -0.8676 22 6 1.6384 2.1253 -1.3091 23 6 2.1184 3.5780 -1.2946 24 6 2.2796 1.3881 -2.4864 25 1 -0.3634 0.4492 0.9242 26 1 -0.3633 -1.0251 -0.0730 27 1 -0.3634 0.5757 -0.8512 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 3.8696 0.6771 0.8409 31 1 4.0120 1.2374 -0.8427 32 1 7.3154 7.2675 2.9992 33 1 7.0054 5.2673 -0.3658 34 1 4.7448 6.9549 1.0041 35 1 5.9536 7.5722 -0.2448 36 1 5.0929 5.8711 -1.9187 37 1 3.8840 5.2537 -0.6698 38 1 0.5537 2.1021 -1.4131 39 1 3.2081 3.6006 -1.2845 40 1 1.7525 4.0904 -2.1844 41 1 1.7363 4.0781 -0.4045 42 1 1.8896 0.3714 -2.5344 43 1 2.0455 1.9112 -3.4136 44 1 3.3606 1.3564 -2.3501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461712.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:49 Heat of formation + Delta-G solvation = -100.957220 kcal Electronic energy + Delta-G solvation = -22084.212208 eV Core-core repulsion = 19001.245127 eV Total energy + Delta-G solvation = -3082.967081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60371 -39.21949 -37.86273 -36.52494 -34.67940 -33.22988 -31.45680 -29.70818 -28.02417 -26.28377 -24.98730 -23.38433 -22.88353 -22.06981 -21.07843 -19.46613 -18.88211 -18.21957 -17.62926 -17.15548 -16.55645 -15.89305 -15.78045 -15.64848 -15.01882 -14.58152 -14.39774 -14.14382 -13.74356 -13.55620 -13.21624 -13.14676 -12.95298 -12.87936 -12.78664 -12.44614 -12.30263 -12.27338 -12.18308 -12.09565 -11.83770 -11.83327 -11.33930 -11.28885 -11.19756 -11.09713 -10.90000 -10.84851 -10.53326 -10.40632 -8.19827 -6.36950 1.41313 1.44107 1.50771 1.53978 2.12691 2.45459 3.06886 3.26674 3.75061 3.85458 3.90183 4.12315 4.16930 4.32646 4.33933 4.42360 4.48686 4.50564 4.55820 4.62961 4.71609 4.78240 4.84621 4.89132 4.90109 4.96893 5.07372 5.14740 5.16735 5.20618 5.23956 5.29534 5.37392 5.41290 5.43190 5.48051 5.51891 5.58229 5.62643 5.71754 5.93523 6.24848 6.66863 7.13749 7.34637 8.85337 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.026999 B = 0.005202 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.823250 B = 5381.273062 C = 5985.654664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.073 4.073 4 H 0.060 0.940 5 C -0.112 4.112 6 C 0.444 3.556 7 O -0.539 6.539 8 O -0.369 6.369 9 C 0.253 3.747 10 H 0.010 0.990 11 C -0.560 4.560 12 H 0.060 0.940 13 C 0.026 3.974 14 N -0.894 5.894 15 Si 0.971 3.029 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.272 1.272 19 C -0.131 4.131 20 C -0.120 4.120 21 C -0.200 4.200 22 C -0.086 4.086 23 C -0.148 4.148 24 C -0.151 4.151 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.266 0.734 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.418 -11.050 -8.676 16.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.091 4.091 4 H 0.079 0.921 5 C -0.149 4.149 6 C 0.289 3.711 7 O -0.430 6.430 8 O -0.286 6.286 9 C 0.200 3.800 10 H 0.028 0.972 11 C -0.598 4.598 12 H 0.078 0.922 13 C -0.176 4.176 14 N -0.530 5.530 15 Si 0.795 3.205 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.197 1.197 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.237 4.237 22 C -0.104 4.104 23 C -0.205 4.205 24 C -0.208 4.208 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.610 -10.568 -8.519 16.631 hybrid contribution 0.907 0.751 0.950 1.513 sum -8.703 -9.817 -7.569 15.146 Atomic orbital electron populations 1.21805 0.95140 1.02223 1.01752 1.21610 0.96561 0.93918 1.03154 1.21120 0.91578 0.97897 0.98531 0.92148 1.21781 0.98149 0.90184 1.04827 1.24382 0.80902 0.91235 0.74534 1.90559 1.54796 1.51052 1.46579 1.86461 1.26417 1.40978 1.74744 1.19769 0.94349 0.76267 0.89649 0.97189 1.21236 1.12551 0.95534 1.30447 0.92177 1.25686 1.00306 0.94423 0.97157 1.70160 1.40801 0.99414 1.42600 0.85424 0.78917 0.77502 0.78652 1.19227 1.20325 1.19730 1.22312 0.95416 0.98377 0.98853 1.22254 1.02350 0.92169 0.98946 1.23314 0.98962 1.05280 0.96108 1.21139 1.00884 0.93754 0.94620 1.22184 1.00213 0.97442 1.00706 1.21995 1.00672 1.01060 0.97073 0.93694 0.91432 0.92127 0.91582 0.89801 0.86739 0.86213 0.92487 0.90556 0.91665 0.89552 0.88106 0.89012 0.89836 0.94461 0.93006 0.93549 0.90365 0.92377 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.76 71.98 0.70 -1.69 16 2 C -0.12 -1.99 5.16 30.59 0.16 -1.84 16 3 C -0.07 -1.77 1.69 -10.79 -0.02 -1.78 16 4 H 0.06 1.81 7.22 -2.39 -0.02 1.80 16 5 C -0.11 -3.15 5.10 29.85 0.15 -3.00 16 6 C 0.44 18.18 5.58 71.23 0.40 18.58 16 7 O -0.54 -24.57 10.34 21.95 0.23 -24.35 16 8 O -0.37 -17.82 9.83 -51.46 -0.51 -18.33 16 9 C 0.25 13.82 2.26 29.85 0.07 13.89 16 10 H 0.01 0.64 6.68 -2.39 -0.02 0.62 16 11 C -0.56 -32.18 8.89 25.60 0.23 -31.96 16 12 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 13 C 0.03 1.46 5.30 84.65 0.45 1.91 16 14 N -0.89 -50.68 11.16 21.45 0.24 -50.44 16 15 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 C -0.13 -6.55 4.54 -10.79 -0.05 -6.60 16 20 C -0.12 -5.66 8.71 30.62 0.27 -5.39 16 21 C -0.20 -8.51 10.00 30.62 0.31 -8.20 16 22 C -0.09 -1.97 2.53 -10.79 -0.03 -2.00 16 23 C -0.15 -4.49 6.66 71.98 0.48 -4.01 16 24 C -0.15 -2.80 8.55 71.98 0.62 -2.18 16 25 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.06 0.92 6.36 -2.39 -0.02 0.90 16 28 H 0.07 1.11 8.03 -2.38 -0.02 1.09 16 29 H 0.08 1.18 6.29 -2.39 -0.02 1.17 16 30 H 0.11 2.82 7.90 -2.39 -0.02 2.80 16 31 H 0.12 2.93 5.52 -2.38 -0.01 2.92 16 32 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.08 3.93 8.13 -2.39 -0.02 3.92 16 34 H 0.06 3.39 8.07 -2.39 -0.02 3.37 16 35 H 0.09 3.77 8.14 -2.39 -0.02 3.75 16 36 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 37 H 0.09 3.98 4.26 -2.39 -0.01 3.97 16 38 H 0.08 1.72 6.42 -2.39 -0.02 1.70 16 39 H 0.04 1.27 4.36 -2.39 -0.01 1.26 16 40 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.05 1.66 6.56 -2.38 -0.02 1.64 16 42 H 0.08 1.11 6.54 -2.39 -0.02 1.09 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.05 1.06 5.86 -2.39 -0.01 1.05 16 Total: -1.00 -64.43 330.12 6.69 -57.74 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.98 Total: 24.22 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 3.73 Total: -34.28 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.24 Total: -50.44 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.28 Total: -42.67 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -64.43 6.69 -57.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461712.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.215 kcal (2) G-P(sol) polarization free energy of solvation -64.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds