Wall clock time and date at job start Mon Mar 30 2020 00:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 H 1.08997 * 109.46951 * 304.18759 * 3 2 1 5 5 C 1.53006 * 109.46948 * 184.19183 * 3 2 1 6 6 C 1.50697 * 109.46952 * 154.88598 * 5 3 2 7 7 O 1.20822 * 120.00076 * 350.82681 * 6 5 3 8 8 O 1.34227 * 120.00028 * 170.83344 * 6 5 3 9 9 C 1.45197 * 117.00372 * 176.39687 * 8 6 5 10 10 H 1.09003 * 109.47161 * 340.19012 * 9 8 6 11 11 C 1.50698 * 109.47335 * 220.18920 * 9 8 6 12 12 H 1.07998 * 120.00011 * 359.97438 * 11 9 8 13 13 C 1.37876 * 119.99796 * 180.02562 * 11 9 8 14 14 N 1.31520 * 119.99845 * 179.97438 * 13 11 9 15 15 Si 1.86803 * 120.00373 * 359.97438 * 13 11 9 16 16 H 1.48501 * 109.47149 * 89.99861 * 15 13 11 17 17 H 1.48494 * 109.47325 * 210.00406 * 15 13 11 18 18 H 1.48504 * 109.46841 * 330.00541 * 15 13 11 19 19 C 1.53005 * 109.46820 * 100.18481 * 9 8 6 20 20 C 1.52997 * 117.50093 * 2.99194 * 19 9 8 21 21 C 1.52995 * 117.49888 * 294.32769 * 19 9 8 22 22 C 1.52998 * 109.46960 * 64.19151 * 3 2 1 23 23 C 1.53001 * 109.47075 * 179.74152 * 22 3 2 24 24 C 1.52997 * 109.47056 * 59.74442 * 22 3 2 25 25 H 1.09005 * 109.47154 * 63.52190 * 1 2 3 26 26 H 1.08998 * 109.47655 * 183.52074 * 1 2 3 27 27 H 1.09000 * 109.47315 * 303.52745 * 1 2 3 28 28 H 1.09003 * 109.47235 * 240.00236 * 2 1 3 29 29 H 1.09002 * 109.47113 * 120.00110 * 2 1 3 30 30 H 1.08999 * 109.47182 * 274.88428 * 5 3 2 31 31 H 1.09005 * 109.47228 * 34.88221 * 5 3 2 32 32 H 0.96998 * 119.99917 * 179.97438 * 14 13 11 33 33 H 1.09004 * 115.54380 * 148.65891 * 19 9 8 34 34 H 1.09000 * 117.49857 * 359.97438 * 20 19 9 35 35 H 1.09000 * 117.49794 * 145.01781 * 20 19 9 36 36 H 1.08998 * 117.49807 * 214.97865 * 21 19 9 37 37 H 1.08991 * 117.50376 * 359.97438 * 21 19 9 38 38 H 1.08991 * 109.47191 * 299.74393 * 22 3 2 39 39 H 1.09006 * 109.47288 * 288.84281 * 23 22 3 40 40 H 1.09003 * 109.46925 * 48.83843 * 23 22 3 41 41 H 1.08995 * 109.47370 * 168.83914 * 23 22 3 42 42 H 1.09000 * 109.47389 * 186.04395 * 24 22 3 43 43 H 1.09002 * 109.47192 * 306.04035 * 24 22 3 44 44 H 1.08998 * 109.47745 * 66.04366 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6167 1.9775 -0.8501 5 6 3.5664 1.4438 -0.1054 6 6 4.0270 2.7450 -0.7101 7 8 3.2199 3.5139 -1.1759 8 8 5.3341 3.0496 -0.7314 9 6 5.7132 4.2811 -1.4006 10 1 4.9156 4.5871 -2.0777 11 6 6.9800 4.0570 -2.1855 12 1 7.4532 3.0862 -2.1813 13 6 7.5355 5.0916 -2.9079 14 7 8.6414 4.8962 -3.5925 15 14 6.7175 6.7710 -2.9146 16 1 7.2580 7.5893 -1.7994 17 1 6.9927 7.4506 -4.2059 18 1 5.2514 6.6081 -2.7434 19 6 5.9458 5.3771 -0.3586 20 6 5.8190 4.9884 1.1158 21 6 4.7378 5.8468 0.4543 22 6 1.6179 2.1326 1.2986 23 6 2.1334 3.5732 1.3015 24 6 2.2069 1.3779 2.4920 25 1 -0.3634 0.4582 -0.9199 26 1 -0.3634 -1.0257 0.0631 27 1 -0.3634 0.5676 0.8567 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9994 1.3316 0.8886 31 1 3.8877 0.6156 -0.7372 32 1 9.0320 5.6239 -4.1010 33 1 6.6973 6.1222 -0.6199 34 1 5.5694 3.9521 1.3434 35 1 6.4867 5.4782 1.8245 36 1 4.6947 6.9009 0.7283 37 1 3.7773 5.3755 0.2466 38 1 0.5304 2.1357 1.3715 39 1 3.2160 3.5714 1.4283 40 1 1.8792 4.0519 0.3558 41 1 1.6723 4.1225 2.1222 42 1 1.8202 1.8036 3.4180 43 1 1.9268 0.3262 2.4309 44 1 3.2932 1.4660 2.4775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123461713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:53 Heat of formation + Delta-G solvation = -83.803021 kcal Electronic energy + Delta-G solvation = -22238.104658 eV Core-core repulsion = 19155.881439 eV Total energy + Delta-G solvation = -3082.223219 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.26005 -38.16429 -36.57186 -34.88662 -32.74061 -32.40330 -30.38438 -28.59154 -27.10828 -25.16709 -22.79943 -22.40849 -21.80288 -20.99895 -19.37748 -18.50188 -17.22914 -16.59965 -16.37620 -15.75451 -15.47780 -14.99429 -14.37606 -13.96859 -13.75977 -13.61819 -13.06802 -12.87549 -12.72973 -12.24178 -12.16573 -11.97887 -11.76505 -11.62540 -11.50303 -11.39453 -11.19351 -11.02746 -10.92677 -10.75875 -10.38432 -10.27694 -10.18268 -10.16259 -9.86546 -9.74673 -9.62472 -9.32251 -8.78156 -8.67693 -6.22214 -4.24291 2.90792 3.18673 3.30882 3.38246 3.54486 4.28198 4.52815 4.68303 4.76223 4.82770 5.05782 5.12247 5.21916 5.32776 5.39538 5.46807 5.53093 5.58516 5.66541 5.67014 5.68421 5.74752 5.76965 5.79865 5.92238 5.98238 6.03489 6.04153 6.17200 6.18446 6.28437 6.29475 6.33983 6.49813 6.56849 6.60404 6.72150 6.77809 6.90648 7.40819 7.55194 8.26920 8.64059 8.85581 9.35344 10.89625 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.028021 B = 0.005566 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.027098 B = 5029.175632 C = 5412.448788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.080 4.080 4 H 0.091 0.909 5 C -0.119 4.119 6 C 0.453 3.547 7 O -0.517 6.517 8 O -0.342 6.342 9 C 0.222 3.778 10 H 0.055 0.945 11 C -0.522 4.522 12 H 0.086 0.914 13 C 0.080 3.920 14 N -0.888 5.888 15 Si 0.872 3.128 16 H -0.274 1.274 17 H -0.289 1.289 18 H -0.256 1.256 19 C -0.161 4.161 20 C -0.169 4.169 21 C -0.205 4.205 22 C -0.089 4.089 23 C -0.157 4.157 24 C -0.155 4.155 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.269 0.731 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 -6.593 10.596 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.098 4.098 4 H 0.109 0.891 5 C -0.156 4.156 6 C 0.297 3.703 7 O -0.407 6.407 8 O -0.257 6.257 9 C 0.168 3.832 10 H 0.072 0.928 11 C -0.559 4.559 12 H 0.104 0.896 13 C -0.123 4.123 14 N -0.525 5.525 15 Si 0.700 3.300 16 H -0.200 1.200 17 H -0.215 1.215 18 H -0.180 1.180 19 C -0.180 4.180 20 C -0.206 4.206 21 C -0.242 4.242 22 C -0.107 4.107 23 C -0.214 4.214 24 C -0.212 4.212 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.707 -6.249 10.324 18.262 hybrid contribution -0.121 1.161 -0.051 1.169 sum -13.827 -5.088 10.272 17.961 Atomic orbital electron populations 1.21806 0.95867 1.01251 1.02054 1.21669 0.96016 0.96102 1.02155 1.21206 0.92948 0.96272 0.99410 0.89108 1.21575 0.96930 0.93999 1.03108 1.23431 0.82090 0.88262 0.76532 1.90535 1.54756 1.50952 1.44493 1.86508 1.24552 1.44539 1.70117 1.20450 0.97230 0.76937 0.88600 0.92756 1.20802 1.07197 1.00214 1.27700 0.89554 1.24732 0.94500 0.98530 0.94536 1.69850 1.19068 1.33066 1.30536 0.87046 0.81474 0.84367 0.77096 1.20046 1.21535 1.17986 1.23425 0.99333 1.01638 0.93566 1.22740 1.01973 1.00114 0.95723 1.23185 0.95173 0.99301 1.06500 1.21141 1.00157 0.95359 0.94085 1.22189 1.00985 0.95690 1.02556 1.22032 1.01226 1.00262 0.97683 0.92730 0.93039 0.92446 0.91867 0.91487 0.88125 0.88175 0.92123 0.87377 0.88906 0.89745 0.89992 0.88235 0.91040 0.92835 0.90537 0.93614 0.92993 0.92286 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.74 37.16 0.36 -0.96 16 2 C -0.12 -1.16 5.09 -26.73 -0.14 -1.30 16 3 C -0.08 -0.96 1.70 -90.62 -0.15 -1.11 16 4 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 5 C -0.12 -1.62 5.01 -27.88 -0.14 -1.76 16 6 C 0.45 8.52 5.86 36.00 0.21 8.74 16 7 O -0.52 -10.61 10.77 -18.75 -0.20 -10.81 16 8 O -0.34 -7.56 8.22 -39.25 -0.32 -7.89 16 9 C 0.22 5.51 2.02 -27.88 -0.06 5.45 16 10 H 0.05 1.44 5.96 -51.93 -0.31 1.13 16 11 C -0.52 -14.90 9.48 -34.44 -0.33 -15.23 16 12 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 13 C 0.08 2.30 5.41 -17.82 -0.10 2.20 16 14 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 15 Si 0.87 21.60 24.50 -169.99 -4.16 17.44 16 16 H -0.27 -6.52 6.75 56.52 0.38 -6.14 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 19 C -0.16 -3.64 4.28 -90.62 -0.39 -4.03 16 20 C -0.17 -3.19 9.87 -26.69 -0.26 -3.45 16 21 C -0.20 -3.94 10.19 -26.69 -0.27 -4.21 16 22 C -0.09 -1.00 2.49 -90.62 -0.23 -1.23 16 23 C -0.16 -2.13 6.88 37.16 0.26 -1.88 16 24 C -0.16 -1.51 8.57 37.16 0.32 -1.19 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.48 6.38 -51.93 -0.33 0.15 16 28 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 29 H 0.07 0.57 6.08 -51.93 -0.32 0.26 16 30 H 0.10 1.24 5.69 -51.93 -0.30 0.95 16 31 H 0.10 1.25 7.83 -51.93 -0.41 0.85 16 32 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.11 2.58 4.70 -51.93 -0.24 2.34 16 34 H 0.09 1.71 6.92 -51.93 -0.36 1.35 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.10 1.93 5.19 -51.93 -0.27 1.66 16 38 H 0.07 0.75 6.48 -51.93 -0.34 0.41 16 39 H 0.05 0.79 6.12 -51.93 -0.32 0.47 16 40 H 0.08 1.21 6.07 -51.93 -0.32 0.89 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.50 6.03 -51.93 -0.31 0.19 16 44 H 0.06 0.60 6.24 -51.93 -0.32 0.27 16 LS Contribution 324.36 15.07 4.89 4.89 Total: -1.00 -30.30 324.36 -7.00 -37.30 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.07 Total: 4.98 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -0.91 Total: -19.95 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.77 Total: -25.96 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.52 Total: -18.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.16 Total: 17.44 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.30 -7.00 -37.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.502 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds