Wall clock time and date at job start Mon Mar 30 2020 00:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 H 1.08997 * 109.46951 * 304.18759 * 3 2 1 5 5 C 1.53006 * 109.46948 * 184.19183 * 3 2 1 6 6 C 1.50697 * 109.46952 * 154.88598 * 5 3 2 7 7 O 1.20822 * 120.00076 * 350.82681 * 6 5 3 8 8 O 1.34227 * 120.00028 * 170.83344 * 6 5 3 9 9 C 1.45197 * 117.00372 * 176.39687 * 8 6 5 10 10 H 1.09003 * 109.47161 * 340.19012 * 9 8 6 11 11 C 1.50698 * 109.47335 * 220.18920 * 9 8 6 12 12 H 1.07998 * 120.00011 * 359.97438 * 11 9 8 13 13 C 1.37876 * 119.99796 * 180.02562 * 11 9 8 14 14 N 1.31520 * 119.99845 * 179.97438 * 13 11 9 15 15 Si 1.86803 * 120.00373 * 359.97438 * 13 11 9 16 16 H 1.48501 * 109.47149 * 89.99861 * 15 13 11 17 17 H 1.48494 * 109.47325 * 210.00406 * 15 13 11 18 18 H 1.48504 * 109.46841 * 330.00541 * 15 13 11 19 19 C 1.53005 * 109.46820 * 100.18481 * 9 8 6 20 20 C 1.52997 * 117.50093 * 2.99194 * 19 9 8 21 21 C 1.52995 * 117.49888 * 294.32769 * 19 9 8 22 22 C 1.52998 * 109.46960 * 64.19151 * 3 2 1 23 23 C 1.53001 * 109.47075 * 179.74152 * 22 3 2 24 24 C 1.52997 * 109.47056 * 59.74442 * 22 3 2 25 25 H 1.09005 * 109.47154 * 63.52190 * 1 2 3 26 26 H 1.08998 * 109.47655 * 183.52074 * 1 2 3 27 27 H 1.09000 * 109.47315 * 303.52745 * 1 2 3 28 28 H 1.09003 * 109.47235 * 240.00236 * 2 1 3 29 29 H 1.09002 * 109.47113 * 120.00110 * 2 1 3 30 30 H 1.08999 * 109.47182 * 274.88428 * 5 3 2 31 31 H 1.09005 * 109.47228 * 34.88221 * 5 3 2 32 32 H 0.96998 * 119.99917 * 179.97438 * 14 13 11 33 33 H 1.09004 * 115.54380 * 148.65891 * 19 9 8 34 34 H 1.09000 * 117.49857 * 359.97438 * 20 19 9 35 35 H 1.09000 * 117.49794 * 145.01781 * 20 19 9 36 36 H 1.08998 * 117.49807 * 214.97865 * 21 19 9 37 37 H 1.08991 * 117.50376 * 359.97438 * 21 19 9 38 38 H 1.08991 * 109.47191 * 299.74393 * 22 3 2 39 39 H 1.09006 * 109.47288 * 288.84281 * 23 22 3 40 40 H 1.09003 * 109.46925 * 48.83843 * 23 22 3 41 41 H 1.08995 * 109.47370 * 168.83914 * 23 22 3 42 42 H 1.09000 * 109.47389 * 186.04395 * 24 22 3 43 43 H 1.09002 * 109.47192 * 306.04035 * 24 22 3 44 44 H 1.08998 * 109.47745 * 66.04366 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6167 1.9775 -0.8501 5 6 3.5664 1.4438 -0.1054 6 6 4.0270 2.7450 -0.7101 7 8 3.2199 3.5139 -1.1759 8 8 5.3341 3.0496 -0.7314 9 6 5.7132 4.2811 -1.4006 10 1 4.9156 4.5871 -2.0777 11 6 6.9800 4.0570 -2.1855 12 1 7.4532 3.0862 -2.1813 13 6 7.5355 5.0916 -2.9079 14 7 8.6414 4.8962 -3.5925 15 14 6.7175 6.7710 -2.9146 16 1 7.2580 7.5893 -1.7994 17 1 6.9927 7.4506 -4.2059 18 1 5.2514 6.6081 -2.7434 19 6 5.9458 5.3771 -0.3586 20 6 5.8190 4.9884 1.1158 21 6 4.7378 5.8468 0.4543 22 6 1.6179 2.1326 1.2986 23 6 2.1334 3.5732 1.3015 24 6 2.2069 1.3779 2.4920 25 1 -0.3634 0.4582 -0.9199 26 1 -0.3634 -1.0257 0.0631 27 1 -0.3634 0.5676 0.8567 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9994 1.3316 0.8886 31 1 3.8877 0.6156 -0.7372 32 1 9.0320 5.6239 -4.1010 33 1 6.6973 6.1222 -0.6199 34 1 5.5694 3.9521 1.3434 35 1 6.4867 5.4782 1.8245 36 1 4.6947 6.9009 0.7283 37 1 3.7773 5.3755 0.2466 38 1 0.5304 2.1357 1.3715 39 1 3.2160 3.5714 1.4283 40 1 1.8792 4.0519 0.3558 41 1 1.6723 4.1225 2.1222 42 1 1.8202 1.8036 3.4180 43 1 1.9268 0.3262 2.4309 44 1 3.2932 1.4660 2.4775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:52 Heat of formation + Delta-G solvation = -100.277238 kcal Electronic energy + Delta-G solvation = -22238.819033 eV Core-core repulsion = 19155.881439 eV Total energy + Delta-G solvation = -3082.937595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76315 -39.40629 -38.04510 -36.52307 -34.91034 -33.22621 -31.61396 -30.44418 -28.00093 -26.29467 -24.72240 -23.36413 -23.22911 -22.50575 -21.06565 -19.51709 -19.06528 -18.30601 -17.89007 -17.34167 -16.97216 -15.87693 -15.79885 -15.56902 -15.15495 -14.81103 -14.61819 -14.27086 -13.73928 -13.66021 -13.43451 -13.38966 -13.15626 -12.88277 -12.71169 -12.56224 -12.49213 -12.33254 -12.23955 -12.10272 -11.93400 -11.82026 -11.48656 -11.43029 -11.23322 -11.13798 -11.01821 -10.94853 -10.79366 -10.61864 -8.45068 -6.52657 1.21455 1.29058 1.40021 1.41379 2.02712 2.20132 2.83772 2.98363 3.71610 3.82330 3.84245 3.89237 4.01713 4.07428 4.12584 4.29839 4.40952 4.48049 4.52028 4.60085 4.61606 4.71276 4.77855 4.83308 4.85289 4.86330 4.93797 5.01015 5.05249 5.12199 5.16774 5.20226 5.23893 5.24504 5.37675 5.40073 5.40492 5.46494 5.56308 5.68832 5.78703 6.19402 6.50914 6.98819 7.14662 8.70763 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.028021 B = 0.005566 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.027098 B = 5029.175632 C = 5412.448788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.075 4.075 4 H 0.064 0.936 5 C -0.113 4.113 6 C 0.447 3.553 7 O -0.535 6.535 8 O -0.355 6.355 9 C 0.231 3.769 10 H 0.032 0.968 11 C -0.535 4.535 12 H 0.045 0.955 13 C 0.032 3.968 14 N -0.931 5.931 15 Si 0.936 3.064 16 H -0.253 1.253 17 H -0.284 1.284 18 H -0.255 1.255 19 C -0.198 4.198 20 C -0.148 4.148 21 C -0.185 4.185 22 C -0.086 4.086 23 C -0.154 4.154 24 C -0.152 4.152 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.274 0.726 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.038 0.962 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.419 -6.612 12.932 21.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.094 4.094 4 H 0.083 0.917 5 C -0.150 4.150 6 C 0.292 3.708 7 O -0.426 6.426 8 O -0.271 6.271 9 C 0.176 3.824 10 H 0.049 0.951 11 C -0.573 4.573 12 H 0.063 0.937 13 C -0.167 4.167 14 N -0.570 5.570 15 Si 0.760 3.240 16 H -0.178 1.178 17 H -0.210 1.210 18 H -0.179 1.179 19 C -0.217 4.217 20 C -0.185 4.185 21 C -0.222 4.222 22 C -0.104 4.104 23 C -0.211 4.211 24 C -0.209 4.209 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.482 -6.284 12.675 20.972 hybrid contribution 0.403 1.056 -0.797 1.383 sum -15.079 -5.228 11.879 19.895 Atomic orbital electron populations 1.21801 0.95068 1.02194 1.01818 1.21651 0.96652 0.94142 1.03034 1.21181 0.91322 0.97926 0.98958 0.91730 1.21786 0.98271 0.91081 1.03832 1.24458 0.80620 0.89617 0.76088 1.90531 1.54771 1.51978 1.45307 1.86500 1.26897 1.43589 1.70137 1.19961 0.94363 0.78832 0.89224 0.95052 1.21011 1.08628 0.98697 1.28963 0.93709 1.25524 0.94903 1.02478 0.93841 1.69972 1.20736 1.34624 1.31646 0.86023 0.80391 0.79703 0.77846 1.17811 1.21018 1.17877 1.23132 1.01732 1.01633 0.95161 1.22867 1.01584 1.00641 0.93417 1.23229 0.93948 1.00813 1.04192 1.21138 1.00907 0.93959 0.94398 1.22128 1.00130 0.97388 1.01467 1.22007 1.00723 1.01079 0.97063 0.93687 0.91594 0.91935 0.91875 0.89738 0.86182 0.86807 0.91677 0.88598 0.88648 0.87195 0.87483 0.88711 0.89857 0.94286 0.93305 0.92354 0.92080 0.90557 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.74 71.98 0.70 -1.54 16 2 C -0.12 -1.93 5.09 30.59 0.16 -1.78 16 3 C -0.08 -1.68 1.70 -10.79 -0.02 -1.70 16 4 H 0.06 1.81 7.00 -2.39 -0.02 1.79 16 5 C -0.11 -2.94 5.01 29.85 0.15 -2.79 16 6 C 0.45 16.88 5.86 71.23 0.42 17.30 16 7 O -0.54 -22.32 10.77 21.98 0.24 -22.09 16 8 O -0.35 -16.00 8.22 -51.39 -0.42 -16.42 16 9 C 0.23 11.72 2.02 29.85 0.06 11.78 16 10 H 0.03 1.73 5.96 -2.39 -0.01 1.71 16 11 C -0.54 -31.92 9.48 25.60 0.24 -31.67 16 12 H 0.04 2.95 8.06 -2.91 -0.02 2.92 16 13 C 0.03 1.89 5.41 84.65 0.46 2.35 16 14 N -0.93 -57.82 13.96 21.45 0.30 -57.53 16 15 Si 0.94 45.23 24.50 68.60 1.68 46.91 16 16 H -0.25 -11.31 6.75 99.48 0.67 -10.64 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 18 H -0.25 -12.17 6.53 99.48 0.65 -11.52 16 19 C -0.20 -8.81 4.28 -10.79 -0.05 -8.85 16 20 C -0.15 -5.29 9.87 30.62 0.30 -4.99 16 21 C -0.19 -6.73 10.19 30.62 0.31 -6.42 16 22 C -0.09 -1.73 2.49 -10.79 -0.03 -1.76 16 23 C -0.15 -3.96 6.88 71.98 0.50 -3.47 16 24 C -0.15 -2.43 8.57 71.98 0.62 -1.82 16 25 H 0.04 0.74 8.14 -2.38 -0.02 0.73 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.86 6.38 -2.39 -0.02 0.84 16 28 H 0.06 1.05 8.03 -2.39 -0.02 1.03 16 29 H 0.08 1.12 6.08 -2.39 -0.01 1.11 16 30 H 0.12 2.70 5.69 -2.39 -0.01 2.68 16 31 H 0.11 2.68 7.83 -2.38 -0.02 2.67 16 32 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 33 H 0.10 4.48 4.70 -2.39 -0.01 4.47 16 34 H 0.10 3.35 6.92 -2.39 -0.02 3.33 16 35 H 0.11 3.36 8.14 -2.39 -0.02 3.35 16 36 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 37 H 0.09 3.56 5.19 -2.39 -0.01 3.55 16 38 H 0.08 1.51 6.48 -2.39 -0.02 1.50 16 39 H 0.04 1.10 6.12 -2.38 -0.01 1.08 16 40 H 0.05 1.52 6.07 -2.39 -0.01 1.51 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 0.97 6.03 -2.39 -0.01 0.96 16 44 H 0.05 0.91 6.24 -2.39 -0.01 0.90 16 Total: -1.00 -68.43 324.36 6.51 -61.93 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.89 Total: 22.56 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 3.82 Total: -35.36 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.30 Total: -57.53 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.19 Total: -38.51 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.68 Total: 46.91 kcal Total: -68.43 6.51 -61.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.350 kcal (2) G-P(sol) polarization free energy of solvation -68.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds