Wall clock time and date at job start Mon Mar 30 2020 00:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47265 * 2 1 4 4 H 1.08996 * 109.46812 * 305.14040 * 3 2 1 5 5 C 1.52998 * 109.47394 * 65.14665 * 3 2 1 6 6 C 1.50703 * 109.47259 * 63.10893 * 5 3 2 7 7 O 1.20824 * 119.99912 * 354.57678 * 6 5 3 8 8 O 1.34226 * 119.99988 * 174.58084 * 6 5 3 9 9 C 1.45193 * 116.99899 * 185.28607 * 8 6 5 10 10 H 1.08998 * 109.47409 * 336.06108 * 9 8 6 11 11 C 1.50705 * 109.47149 * 216.05507 * 9 8 6 12 12 H 1.08002 * 119.99723 * 0.02562 * 11 9 8 13 13 C 1.37873 * 119.99771 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00533 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99756 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47072 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47328 * 119.99968 * 15 13 11 18 18 H 1.48503 * 109.47225 * 240.00101 * 15 13 11 19 19 C 1.53011 * 109.47195 * 96.05913 * 9 8 6 20 20 C 1.52995 * 117.49708 * 9.85372 * 19 9 8 21 21 C 1.52994 * 117.49706 * 301.19656 * 19 9 8 22 22 C 1.53004 * 109.46966 * 185.14510 * 3 2 1 23 23 C 1.52998 * 109.46937 * 59.99876 * 22 3 2 24 24 C 1.53002 * 109.46966 * 180.02562 * 22 3 2 25 25 H 1.08999 * 109.47095 * 304.26913 * 1 2 3 26 26 H 1.09005 * 109.46793 * 64.26386 * 1 2 3 27 27 H 1.08993 * 109.47273 * 184.26265 * 1 2 3 28 28 H 1.08995 * 109.47541 * 239.99681 * 2 1 3 29 29 H 1.08998 * 109.47044 * 119.99701 * 2 1 3 30 30 H 1.08999 * 109.47076 * 183.11303 * 5 3 2 31 31 H 1.09003 * 109.46467 * 303.11081 * 5 3 2 32 32 H 0.96997 * 120.00438 * 180.02562 * 14 13 11 33 33 H 1.09001 * 115.55052 * 155.52491 * 19 9 8 34 34 H 1.08997 * 117.50154 * 0.02562 * 20 19 9 35 35 H 1.08997 * 117.49839 * 145.01973 * 20 19 9 36 36 H 1.09006 * 117.49948 * 214.98034 * 21 19 9 37 37 H 1.09000 * 117.50261 * 359.97192 * 21 19 9 38 38 H 1.08997 * 109.46781 * 299.99948 * 22 3 2 39 39 H 1.09010 * 109.46777 * 179.97438 * 23 22 3 40 40 H 1.09000 * 109.47219 * 299.99756 * 23 22 3 41 41 H 1.08997 * 109.47326 * 60.00406 * 23 22 3 42 42 H 1.08993 * 109.47436 * 59.99775 * 24 22 3 43 43 H 1.08995 * 109.47083 * 180.02562 * 24 22 3 44 44 H 1.09006 * 109.46673 * 300.00045 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6035 1.9822 -0.8403 5 6 1.6385 2.1255 1.3089 6 6 2.3038 1.4253 2.4656 7 8 2.9455 0.4194 2.2747 8 8 2.1835 1.9189 3.7080 9 6 2.9458 1.2624 4.7548 10 1 3.1624 0.2363 4.4576 11 6 2.1450 1.2572 6.0315 12 1 1.1613 1.7025 6.0537 13 6 2.6678 0.6831 7.1708 14 7 3.8655 0.1405 7.1437 15 14 1.6749 0.6761 8.7531 16 1 0.3690 1.3438 8.5210 17 1 1.4437 -0.7254 9.1863 18 1 2.4226 1.4039 9.8099 19 6 4.2584 2.0161 4.9792 20 6 4.4214 3.3717 4.2888 21 6 5.2050 2.1569 3.7856 22 6 3.5646 1.4444 -0.1294 23 6 3.9661 0.7614 -1.4382 24 6 4.0747 2.8869 -0.1287 25 1 -0.3633 0.5787 0.8493 26 1 -0.3633 0.4463 -0.9258 27 1 -0.3633 -1.0247 0.0764 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.9534 3.1687 1.2858 31 1 0.5561 2.0752 1.4276 32 1 4.2331 -0.2637 7.9452 33 1 4.7065 1.8965 5.9656 34 1 3.5935 3.7268 3.6752 35 1 4.9771 4.1438 4.8209 36 1 6.2760 2.1304 3.9867 37 1 4.8931 1.7123 2.8405 38 1 4.0011 0.9046 0.7110 39 1 5.0523 0.7631 -1.5306 40 1 3.6028 -0.2663 -1.4382 41 1 3.5296 1.3011 -2.2786 42 1 3.7886 3.3730 0.8039 43 1 5.1607 2.8882 -0.2213 44 1 3.6380 3.4270 -0.9689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123461715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:55 Heat of formation + Delta-G solvation = -88.277238 kcal Electronic energy + Delta-G solvation = -22268.975522 eV Core-core repulsion = 19186.558287 eV Total energy + Delta-G solvation = -3082.417236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16726 -37.81712 -36.06070 -34.56096 -32.80344 -32.72226 -30.03939 -27.78843 -26.96565 -25.04175 -23.28349 -21.59755 -21.44863 -20.65490 -19.45805 -18.84232 -16.80804 -16.65152 -15.93185 -15.16744 -14.99766 -14.54979 -14.36532 -14.15446 -13.83948 -13.29890 -13.03604 -12.66203 -12.43439 -12.10124 -11.98964 -11.75394 -11.61463 -11.43161 -11.35277 -11.20994 -11.05486 -10.97797 -10.75030 -10.59806 -10.42969 -10.25092 -10.09818 -10.05791 -9.97813 -9.48086 -9.24634 -9.03906 -8.51340 -8.43059 -6.18374 -4.24897 3.03534 3.23643 3.30898 3.35365 3.74874 4.34573 4.84070 4.89131 4.93621 5.01242 5.14428 5.27850 5.46098 5.55478 5.57608 5.64425 5.71946 5.74736 5.80755 5.84049 5.92275 5.95071 6.00373 6.06956 6.09566 6.12429 6.14684 6.18326 6.37712 6.42748 6.43477 6.55764 6.59707 6.66920 6.77491 6.97796 7.04733 7.20036 7.58025 7.65330 7.90058 8.13982 8.66792 8.91571 9.39880 10.88871 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.023442 B = 0.005785 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.137220 B = 4839.351184 C = 5500.906816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.138 4.138 3 C -0.063 4.063 4 H 0.072 0.928 5 C -0.121 4.121 6 C 0.454 3.546 7 O -0.510 6.510 8 O -0.355 6.355 9 C 0.244 3.756 10 H 0.056 0.944 11 C -0.517 4.517 12 H 0.069 0.931 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.907 3.093 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.281 1.281 19 C -0.114 4.114 20 C -0.192 4.192 21 C -0.206 4.206 22 C -0.112 4.112 23 C -0.143 4.143 24 C -0.149 4.149 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.130 0.870 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.120 3.854 -13.518 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.175 4.175 3 C -0.082 4.082 4 H 0.091 0.909 5 C -0.158 4.158 6 C 0.298 3.702 7 O -0.401 6.401 8 O -0.272 6.272 9 C 0.192 3.808 10 H 0.074 0.926 11 C -0.555 4.555 12 H 0.087 0.913 13 C -0.138 4.138 14 N -0.524 5.524 15 Si 0.734 3.266 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.132 4.132 20 C -0.229 4.229 21 C -0.243 4.243 22 C -0.130 4.130 23 C -0.200 4.200 24 C -0.206 4.206 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.147 0.853 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.802 3.456 -13.396 13.952 hybrid contribution -0.263 0.000 0.889 0.927 sum -2.064 3.455 -12.508 13.139 Atomic orbital electron populations 1.21851 0.96677 1.01427 1.01164 1.21920 0.94990 0.96562 1.04045 1.20999 0.95818 0.96404 0.94971 0.90924 1.21574 1.01940 1.00804 0.91504 1.23358 0.78400 0.83239 0.85194 1.90463 1.39775 1.25023 1.84788 1.86487 1.64996 1.58589 1.17099 1.20116 0.86299 0.92127 0.82286 0.92608 1.21032 1.02852 1.38490 0.93158 0.91286 1.24893 0.95229 0.94716 0.99011 1.69978 1.15751 1.37369 1.29273 0.86288 0.80104 0.77862 0.82322 1.19483 1.20777 1.20737 1.23021 0.97113 0.95924 0.97188 1.22785 1.02448 0.92063 1.05565 1.22972 0.97269 1.03573 1.00499 1.21487 0.95013 0.96603 0.99854 1.21842 1.00660 1.00578 0.96928 1.21903 1.00788 0.96552 1.01356 0.92717 0.93370 0.93030 0.92056 0.88904 0.88550 0.88315 0.92502 0.85270 0.89624 0.90520 0.90480 0.89755 0.87969 0.93190 0.92447 0.93465 0.92611 0.92948 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.77 37.16 0.36 -1.47 16 2 C -0.14 -1.86 4.98 -26.73 -0.13 -1.99 16 3 C -0.06 -0.82 1.72 -90.62 -0.16 -0.97 16 4 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 5 C -0.12 -1.73 4.99 -27.88 -0.14 -1.87 16 6 C 0.45 8.86 6.39 36.01 0.23 9.09 16 7 O -0.51 -10.87 9.49 -18.75 -0.18 -11.04 16 8 O -0.36 -8.12 8.25 -39.25 -0.32 -8.44 16 9 C 0.24 6.34 2.48 -27.87 -0.07 6.27 16 10 H 0.06 1.62 6.90 -51.93 -0.36 1.26 16 11 C -0.52 -14.31 8.90 -34.44 -0.31 -14.61 16 12 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 13 C 0.06 1.74 5.21 -17.82 -0.09 1.65 16 14 N -0.89 -24.87 11.57 55.43 0.64 -24.23 16 15 Si 0.91 20.94 29.54 -169.99 -5.02 15.91 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 C -0.11 -2.76 5.28 -90.62 -0.48 -3.24 16 20 C -0.19 -3.93 9.88 -26.70 -0.26 -4.19 16 21 C -0.21 -4.33 9.99 -26.70 -0.27 -4.60 16 22 C -0.11 -1.51 2.16 -90.62 -0.20 -1.70 16 23 C -0.14 -1.66 8.85 37.16 0.33 -1.33 16 24 C -0.15 -1.85 8.84 37.16 0.33 -1.52 16 25 H 0.05 0.67 6.32 -51.93 -0.33 0.35 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.76 6.17 -51.93 -0.32 0.43 16 29 H 0.09 1.56 5.51 -51.93 -0.29 1.27 16 30 H 0.10 1.25 6.60 -51.93 -0.34 0.91 16 31 H 0.10 1.29 6.34 -51.93 -0.33 0.96 16 32 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.13 3.45 6.45 -51.93 -0.33 3.11 16 34 H 0.09 1.71 7.06 -51.93 -0.37 1.34 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.08 1.78 6.30 -51.93 -0.33 1.46 16 38 H 0.10 1.73 5.45 -51.93 -0.28 1.45 16 39 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.06 0.67 6.32 -51.93 -0.33 0.34 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.74 6.50 -51.93 -0.34 0.40 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -28.39 334.92 -7.98 -36.36 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.29 Total: 6.89 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -0.85 Total: -20.49 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.64 Total: -24.23 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.50 Total: -19.49 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.39 -7.98 -36.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.915 kcal (2) G-P(sol) polarization free energy of solvation -28.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds