Wall clock time and date at job start Mon Mar 30 2020 00:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47265 * 2 1 4 4 H 1.08996 * 109.46812 * 305.14040 * 3 2 1 5 5 C 1.52998 * 109.47394 * 65.14665 * 3 2 1 6 6 C 1.50703 * 109.47259 * 63.10893 * 5 3 2 7 7 O 1.20824 * 119.99912 * 354.57678 * 6 5 3 8 8 O 1.34226 * 119.99988 * 174.58084 * 6 5 3 9 9 C 1.45193 * 116.99899 * 185.28607 * 8 6 5 10 10 H 1.08998 * 109.47409 * 336.06108 * 9 8 6 11 11 C 1.50705 * 109.47149 * 216.05507 * 9 8 6 12 12 H 1.08002 * 119.99723 * 0.02562 * 11 9 8 13 13 C 1.37873 * 119.99771 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00533 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99756 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47072 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47328 * 119.99968 * 15 13 11 18 18 H 1.48503 * 109.47225 * 240.00101 * 15 13 11 19 19 C 1.53011 * 109.47195 * 96.05913 * 9 8 6 20 20 C 1.52995 * 117.49708 * 9.85372 * 19 9 8 21 21 C 1.52994 * 117.49706 * 301.19656 * 19 9 8 22 22 C 1.53004 * 109.46966 * 185.14510 * 3 2 1 23 23 C 1.52998 * 109.46937 * 59.99876 * 22 3 2 24 24 C 1.53002 * 109.46966 * 180.02562 * 22 3 2 25 25 H 1.08999 * 109.47095 * 304.26913 * 1 2 3 26 26 H 1.09005 * 109.46793 * 64.26386 * 1 2 3 27 27 H 1.08993 * 109.47273 * 184.26265 * 1 2 3 28 28 H 1.08995 * 109.47541 * 239.99681 * 2 1 3 29 29 H 1.08998 * 109.47044 * 119.99701 * 2 1 3 30 30 H 1.08999 * 109.47076 * 183.11303 * 5 3 2 31 31 H 1.09003 * 109.46467 * 303.11081 * 5 3 2 32 32 H 0.96997 * 120.00438 * 180.02562 * 14 13 11 33 33 H 1.09001 * 115.55052 * 155.52491 * 19 9 8 34 34 H 1.08997 * 117.50154 * 0.02562 * 20 19 9 35 35 H 1.08997 * 117.49839 * 145.01973 * 20 19 9 36 36 H 1.09006 * 117.49948 * 214.98034 * 21 19 9 37 37 H 1.09000 * 117.50261 * 359.97192 * 21 19 9 38 38 H 1.08997 * 109.46781 * 299.99948 * 22 3 2 39 39 H 1.09010 * 109.46777 * 179.97438 * 23 22 3 40 40 H 1.09000 * 109.47219 * 299.99756 * 23 22 3 41 41 H 1.08997 * 109.47326 * 60.00406 * 23 22 3 42 42 H 1.08993 * 109.47436 * 59.99775 * 24 22 3 43 43 H 1.08995 * 109.47083 * 180.02562 * 24 22 3 44 44 H 1.09006 * 109.46673 * 300.00045 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6035 1.9822 -0.8403 5 6 1.6385 2.1255 1.3089 6 6 2.3038 1.4253 2.4656 7 8 2.9455 0.4194 2.2747 8 8 2.1835 1.9189 3.7080 9 6 2.9458 1.2624 4.7548 10 1 3.1624 0.2363 4.4576 11 6 2.1450 1.2572 6.0315 12 1 1.1613 1.7025 6.0537 13 6 2.6678 0.6831 7.1708 14 7 3.8655 0.1405 7.1437 15 14 1.6749 0.6761 8.7531 16 1 0.3690 1.3438 8.5210 17 1 1.4437 -0.7254 9.1863 18 1 2.4226 1.4039 9.8099 19 6 4.2584 2.0161 4.9792 20 6 4.4214 3.3717 4.2888 21 6 5.2050 2.1569 3.7856 22 6 3.5646 1.4444 -0.1294 23 6 3.9661 0.7614 -1.4382 24 6 4.0747 2.8869 -0.1287 25 1 -0.3633 0.5787 0.8493 26 1 -0.3633 0.4463 -0.9258 27 1 -0.3633 -1.0247 0.0764 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.9534 3.1687 1.2858 31 1 0.5561 2.0752 1.4276 32 1 4.2331 -0.2637 7.9452 33 1 4.7065 1.8965 5.9656 34 1 3.5935 3.7268 3.6752 35 1 4.9771 4.1438 4.8209 36 1 6.2760 2.1304 3.9867 37 1 4.8931 1.7123 2.8405 38 1 4.0011 0.9046 0.7110 39 1 5.0523 0.7631 -1.5306 40 1 3.6028 -0.2663 -1.4382 41 1 3.5296 1.3011 -2.2786 42 1 3.7886 3.3730 0.8039 43 1 5.1607 2.8882 -0.2213 44 1 3.6380 3.4270 -0.9689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:54 Heat of formation + Delta-G solvation = -101.517998 kcal Electronic energy + Delta-G solvation = -22269.549685 eV Core-core repulsion = 19186.558287 eV Total energy + Delta-G solvation = -3082.991398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.70389 -39.25432 -37.61449 -36.26951 -34.86742 -33.73580 -31.28786 -29.69163 -27.91481 -26.28179 -25.16366 -23.22237 -22.75442 -21.97793 -20.96952 -20.40263 -18.77582 -18.25934 -17.50647 -16.93853 -16.33964 -16.04010 -15.80839 -15.43293 -15.11811 -14.63370 -14.52281 -14.19109 -13.63016 -13.39355 -13.17087 -13.09112 -13.00082 -12.83472 -12.82212 -12.76442 -12.51538 -12.32717 -12.26320 -12.21044 -12.00791 -11.89847 -11.55029 -11.26272 -11.15431 -11.07092 -10.97192 -10.60561 -10.43276 -10.35246 -8.26356 -6.42015 1.40474 1.40620 1.49945 1.54407 2.14359 2.45551 3.01821 3.17347 3.73477 3.85160 3.94372 4.07605 4.21404 4.28566 4.30734 4.32835 4.47838 4.57900 4.59166 4.63412 4.66902 4.75867 4.84736 4.88441 4.93299 4.99067 5.04666 5.05207 5.11721 5.17575 5.19557 5.28090 5.29872 5.39106 5.45570 5.52067 5.55983 5.58981 5.60897 5.72929 6.01364 6.24637 6.64805 7.12306 7.31217 8.81022 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.023442 B = 0.005785 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.137220 B = 4839.351184 C = 5500.906816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.137 4.137 3 C -0.058 4.058 4 H 0.109 0.891 5 C -0.113 4.113 6 C 0.445 3.555 7 O -0.531 6.531 8 O -0.366 6.366 9 C 0.254 3.746 10 H 0.008 0.992 11 C -0.544 4.544 12 H 0.063 0.937 13 C 0.019 3.981 14 N -0.914 5.914 15 Si 0.975 3.025 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.272 1.272 19 C -0.147 4.147 20 C -0.162 4.162 21 C -0.192 4.192 22 C -0.113 4.113 23 C -0.139 4.139 24 C -0.145 4.145 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.268 0.732 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.043 0.957 43 H 0.049 0.951 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 5.666 -15.051 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C -0.077 4.077 4 H 0.127 0.873 5 C -0.150 4.150 6 C 0.290 3.710 7 O -0.421 6.421 8 O -0.283 6.283 9 C 0.200 3.800 10 H 0.026 0.974 11 C -0.582 4.582 12 H 0.081 0.919 13 C -0.181 4.181 14 N -0.552 5.552 15 Si 0.799 3.201 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.197 1.197 19 C -0.166 4.166 20 C -0.199 4.199 21 C -0.229 4.229 22 C -0.132 4.132 23 C -0.196 4.196 24 C -0.203 4.203 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.750 5.269 -14.953 16.090 hybrid contribution 0.062 -0.633 1.287 1.436 sum -2.688 4.635 -13.665 14.678 Atomic orbital electron populations 1.21836 0.95290 1.01536 1.02204 1.21854 0.96201 0.96883 1.02511 1.21058 0.95473 0.96077 0.95047 0.87336 1.21771 1.02370 1.01329 0.89531 1.24479 0.78218 0.83244 0.85028 1.90487 1.40688 1.26144 1.84826 1.86469 1.65065 1.58604 1.18149 1.19619 0.87394 0.90317 0.82622 0.97405 1.21327 1.03030 1.39269 0.94543 0.91878 1.25759 0.96188 0.93935 1.02223 1.70104 1.17156 1.37665 1.30253 0.85253 0.78784 0.78036 0.78061 1.18807 1.20309 1.19719 1.22691 0.97345 0.99508 0.97064 1.22852 1.02160 0.91074 1.03842 1.22944 0.97634 1.03575 0.98707 1.21418 0.95392 0.97116 0.99244 1.21799 1.00827 1.00365 0.96592 1.21874 1.00850 0.95728 1.01806 0.93408 0.90712 0.93281 0.90928 0.93121 0.86438 0.86553 0.92264 0.88087 0.88838 0.88178 0.88958 0.90272 0.92204 0.93243 0.93016 0.91149 0.93757 0.93175 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.77 71.98 0.70 -2.62 16 2 C -0.14 -3.57 4.98 30.59 0.15 -3.41 16 3 C -0.06 -1.37 1.72 -10.79 -0.02 -1.39 16 4 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 5 C -0.11 -3.05 4.99 29.85 0.15 -2.91 16 6 C 0.44 17.71 6.39 71.24 0.45 18.16 16 7 O -0.53 -23.82 9.49 21.97 0.21 -23.61 16 8 O -0.37 -17.17 8.25 -51.38 -0.42 -17.59 16 9 C 0.25 13.81 2.48 29.85 0.07 13.88 16 10 H 0.01 0.51 6.90 -2.39 -0.02 0.50 16 11 C -0.54 -31.18 8.90 25.60 0.23 -30.95 16 12 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 13 C 0.02 1.05 5.21 84.65 0.44 1.49 16 14 N -0.91 -53.12 11.57 21.45 0.25 -52.87 16 15 Si 0.98 43.48 29.54 68.60 2.03 45.51 16 16 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 C -0.15 -7.36 5.28 -10.79 -0.06 -7.41 16 20 C -0.16 -6.51 9.88 30.61 0.30 -6.21 16 21 C -0.19 -8.10 9.99 30.61 0.31 -7.80 16 22 C -0.11 -2.91 2.16 -10.79 -0.02 -2.94 16 23 C -0.14 -2.96 8.85 71.98 0.64 -2.32 16 24 C -0.15 -3.27 8.84 71.98 0.64 -2.63 16 25 H 0.05 1.10 6.32 -2.39 -0.02 1.08 16 26 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.69 6.17 -2.39 -0.01 1.68 16 29 H 0.05 1.76 5.51 -2.39 -0.01 1.75 16 30 H 0.12 2.72 6.60 -2.39 -0.02 2.70 16 31 H 0.12 2.78 6.34 -2.39 -0.02 2.76 16 32 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.10 5.62 6.45 -2.39 -0.02 5.60 16 34 H 0.09 3.60 7.06 -2.39 -0.02 3.58 16 35 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 36 H 0.09 3.58 8.14 -2.38 -0.02 3.56 16 37 H 0.08 3.43 6.30 -2.39 -0.02 3.41 16 38 H 0.06 2.08 5.45 -2.39 -0.01 2.07 16 39 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.05 1.14 6.32 -2.39 -0.02 1.13 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.04 1.08 6.50 -2.39 -0.02 1.07 16 43 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -65.16 334.92 7.02 -58.14 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.97 Total: 27.48 kcal Atomic # 6 Polarization: -41.04 SS G_CDS: 3.98 Total: -37.05 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.25 Total: -52.87 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -0.22 Total: -41.20 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -65.16 7.02 -58.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.377 kcal (2) G-P(sol) polarization free energy of solvation -65.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds