Wall clock time and date at job start Mon Mar 30 2020 00:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47323 * 2 1 4 4 H 1.09000 * 109.46897 * 305.34965 * 3 2 1 5 5 C 1.52999 * 109.47505 * 185.34762 * 3 2 1 6 6 C 1.50703 * 109.46595 * 64.99960 * 5 3 2 7 7 O 1.20825 * 120.00253 * 359.97438 * 6 5 3 8 8 O 1.34238 * 119.99854 * 180.02562 * 6 5 3 9 9 C 1.45197 * 116.99765 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47443 * 29.99897 * 9 8 6 11 11 C 1.50704 * 109.46937 * 150.00211 * 9 8 6 12 12 H 1.07996 * 120.00110 * 114.57894 * 11 9 8 13 13 C 1.37878 * 119.99444 * 294.58113 * 11 9 8 14 14 N 1.31519 * 119.99802 * 184.37027 * 13 11 9 15 15 Si 1.86802 * 120.00471 * 4.36635 * 13 11 9 16 16 H 1.48501 * 109.46720 * 94.45154 * 15 13 11 17 17 H 1.48499 * 109.47027 * 214.45298 * 15 13 11 18 18 H 1.48497 * 109.46912 * 334.45410 * 15 13 11 19 19 C 1.52997 * 109.47068 * 269.99774 * 9 8 6 20 20 C 1.53002 * 117.50138 * 134.19985 * 19 9 8 21 21 C 1.52995 * 117.50252 * 65.53752 * 19 9 8 22 22 C 1.53003 * 109.47240 * 65.34785 * 3 2 1 23 23 C 1.52993 * 109.47384 * 185.08351 * 22 3 2 24 24 C 1.53007 * 109.46861 * 65.08413 * 22 3 2 25 25 H 1.09000 * 109.47340 * 184.62008 * 1 2 3 26 26 H 1.08999 * 109.47412 * 304.62300 * 1 2 3 27 27 H 1.09005 * 109.46986 * 64.61945 * 1 2 3 28 28 H 1.09001 * 109.47408 * 239.99706 * 2 1 3 29 29 H 1.09006 * 109.46975 * 119.99876 * 2 1 3 30 30 H 1.08994 * 109.47329 * 184.99631 * 5 3 2 31 31 H 1.08995 * 109.47316 * 305.00551 * 5 3 2 32 32 H 0.97003 * 120.00038 * 179.97438 * 14 13 11 33 33 H 1.09005 * 115.54775 * 279.86794 * 19 9 8 34 34 H 1.08994 * 117.49583 * 0.02562 * 20 19 9 35 35 H 1.08999 * 117.49926 * 145.02231 * 20 19 9 36 36 H 1.08997 * 117.50412 * 214.98199 * 21 19 9 37 37 H 1.09001 * 117.49619 * 0.02562 * 21 19 9 38 38 H 1.08997 * 109.46844 * 305.08827 * 22 3 2 39 39 H 1.09001 * 109.47106 * 294.74144 * 23 22 3 40 40 H 1.08995 * 109.47039 * 54.73996 * 23 22 3 41 41 H 1.08999 * 109.47593 * 174.73786 * 23 22 3 42 42 H 1.09005 * 109.46757 * 300.00155 * 24 22 3 43 43 H 1.08997 * 109.47314 * 60.00060 * 24 22 3 44 44 H 1.09003 * 109.47000 * 180.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6005 1.9832 -0.8382 5 6 3.5641 1.4446 -0.1344 6 6 3.9504 0.8851 -1.4794 7 8 3.0946 0.5215 -2.2509 8 8 5.2454 0.7898 -1.8198 9 6 5.5436 0.2419 -3.1309 10 1 4.7297 0.4770 -3.8167 11 6 6.8252 0.8438 -3.6472 12 1 7.6941 0.2196 -3.7942 13 6 6.8882 2.1915 -3.9317 14 7 7.9781 2.7011 -4.4628 15 14 5.4255 3.2934 -3.5630 16 1 5.6000 3.9169 -2.2266 17 1 5.3331 4.3556 -4.5967 18 1 4.1808 2.4836 -3.5727 19 6 5.6994 -1.2765 -3.0258 20 6 4.9919 -2.1338 -4.0772 21 6 4.4611 -2.0889 -2.6421 22 6 1.6427 2.1239 1.3110 23 6 2.0407 3.6003 1.2595 24 6 2.3607 1.4426 2.4778 25 1 -0.3634 -1.0243 0.0828 26 1 -0.3634 0.5839 0.8456 27 1 -0.3633 0.4405 -0.9285 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9352 2.4656 -0.0454 31 1 3.9992 0.8298 0.6534 32 1 8.0223 3.6492 -4.6633 33 1 6.6643 -1.6256 -2.6580 34 1 4.4158 -1.6160 -4.8439 35 1 5.4910 -3.0472 -4.4007 36 1 4.6112 -2.9727 -2.0222 37 1 3.5352 -1.5417 -2.4650 38 1 0.5648 2.0428 1.4505 39 1 3.1267 3.6825 1.2139 40 1 1.6039 4.0636 0.3749 41 1 1.6752 4.1066 2.1528 42 1 2.0771 0.3908 2.5145 43 1 3.4387 1.5237 2.3383 44 1 2.0774 1.9278 3.4119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123461716.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:58 Heat of formation + Delta-G solvation = -90.377415 kcal Electronic energy + Delta-G solvation = -22117.029909 eV Core-core repulsion = 19034.521603 eV Total energy + Delta-G solvation = -3082.508306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98541 -38.09196 -36.43092 -34.98768 -32.71198 -32.30345 -30.26894 -28.41189 -27.25440 -24.95437 -23.11460 -22.24527 -21.73006 -20.75577 -19.33492 -18.47080 -17.27024 -16.94834 -15.90392 -15.85386 -15.00390 -14.58596 -14.28639 -14.08832 -13.64186 -13.52591 -13.42142 -12.91495 -12.78484 -12.50901 -12.09994 -11.91256 -11.71545 -11.57869 -11.32989 -11.25469 -11.20062 -10.98613 -10.91432 -10.74454 -10.40395 -10.24113 -10.19458 -10.12184 -9.73783 -9.58023 -9.39937 -9.31920 -8.96173 -8.78440 -6.31666 -4.38540 3.03184 3.23557 3.30746 3.38052 3.65787 4.29512 4.55418 4.71713 4.79494 4.88534 5.13892 5.19776 5.26969 5.37947 5.44480 5.53273 5.56531 5.61053 5.64781 5.67312 5.70253 5.76787 5.84296 5.88718 5.99753 6.03931 6.05561 6.08712 6.18090 6.20120 6.25242 6.27295 6.41703 6.52042 6.52668 6.60095 6.64992 6.77617 7.03430 7.41325 7.74283 8.27384 8.70957 8.81948 9.29279 10.77643 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.007227 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.174939 B = 3873.690094 C = 4916.833634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.070 4.070 4 H 0.077 0.923 5 C -0.124 4.124 6 C 0.447 3.553 7 O -0.522 6.522 8 O -0.356 6.356 9 C 0.207 3.793 10 H 0.051 0.949 11 C -0.507 4.507 12 H 0.088 0.912 13 C 0.086 3.914 14 N -0.876 5.876 15 Si 0.876 3.124 16 H -0.272 1.272 17 H -0.290 1.290 18 H -0.256 1.256 19 C -0.139 4.139 20 C -0.170 4.170 21 C -0.200 4.200 22 C -0.093 4.093 23 C -0.153 4.153 24 C -0.153 4.153 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.270 0.730 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.206 -2.664 11.400 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.088 4.088 4 H 0.096 0.904 5 C -0.162 4.162 6 C 0.291 3.709 7 O -0.414 6.414 8 O -0.273 6.273 9 C 0.156 3.844 10 H 0.069 0.931 11 C -0.543 4.543 12 H 0.106 0.894 13 C -0.120 4.120 14 N -0.512 5.512 15 Si 0.703 3.297 16 H -0.198 1.198 17 H -0.216 1.216 18 H -0.180 1.180 19 C -0.157 4.157 20 C -0.208 4.208 21 C -0.237 4.237 22 C -0.111 4.111 23 C -0.210 4.210 24 C -0.210 4.210 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.310 -2.632 11.064 16.759 hybrid contribution -0.524 0.664 0.091 0.851 sum -12.834 -1.967 11.155 17.118 Atomic orbital electron populations 1.21769 0.96281 1.01008 1.01462 1.21752 0.95693 0.96212 1.02911 1.21028 0.93078 0.97166 0.97534 0.90435 1.21650 0.97361 1.03206 0.93987 1.23535 0.83034 0.75485 0.88877 1.90482 1.51479 1.46811 1.52583 1.86965 1.24974 1.73822 1.41531 1.20735 0.97517 0.87746 0.78408 0.93117 1.21008 0.97662 0.94816 1.40795 0.89433 1.25080 0.96084 0.98165 0.92688 1.69903 1.27405 1.13775 1.40116 0.86846 0.83899 0.80477 0.78464 1.19758 1.21647 1.17977 1.22621 0.95727 0.94469 1.02900 1.22790 1.04185 1.01412 0.92371 1.23176 0.99892 1.02514 0.98150 1.21188 1.00376 0.94876 0.94671 1.21934 1.01905 0.95731 1.01478 1.21975 1.01002 1.00610 0.97442 0.93241 0.93006 0.92853 0.89910 0.92380 0.88582 0.88180 0.92041 0.88165 0.89093 0.89548 0.90149 0.87756 0.90710 0.92308 0.92665 0.92849 0.92338 0.92163 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.78 37.15 0.36 -1.31 16 2 C -0.13 -1.69 5.06 -26.73 -0.14 -1.82 16 3 C -0.07 -0.94 1.28 -90.62 -0.12 -1.06 16 4 H 0.08 1.18 7.96 -51.93 -0.41 0.77 16 5 C -0.12 -1.95 4.49 -27.88 -0.13 -2.07 16 6 C 0.45 9.15 5.68 36.01 0.20 9.35 16 7 O -0.52 -11.33 10.63 -18.75 -0.20 -11.53 16 8 O -0.36 -8.37 8.21 -39.28 -0.32 -8.69 16 9 C 0.21 5.11 1.50 -27.88 -0.04 5.07 16 10 H 0.05 1.33 5.82 -51.93 -0.30 1.03 16 11 C -0.51 -14.25 9.35 -34.44 -0.32 -14.57 16 12 H 0.09 2.60 7.99 -52.49 -0.42 2.18 16 13 C 0.09 2.47 5.47 -17.82 -0.10 2.38 16 14 N -0.88 -26.06 13.96 55.43 0.77 -25.28 16 15 Si 0.88 22.05 25.95 -169.99 -4.41 17.64 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 18 H -0.26 -6.47 5.32 56.52 0.30 -6.17 16 19 C -0.14 -2.96 5.29 -90.62 -0.48 -3.44 16 20 C -0.17 -3.17 10.18 -26.69 -0.27 -3.44 16 21 C -0.20 -3.70 9.82 -26.70 -0.26 -3.97 16 22 C -0.09 -1.00 2.57 -90.62 -0.23 -1.23 16 23 C -0.15 -1.63 8.82 37.15 0.33 -1.30 16 24 C -0.15 -1.50 8.47 37.16 0.31 -1.18 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.51 6.28 -51.93 -0.33 0.19 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.32 5.88 -51.93 -0.31 1.01 16 29 H 0.06 0.69 6.33 -51.93 -0.33 0.36 16 30 H 0.10 1.47 6.46 -51.93 -0.34 1.14 16 31 H 0.10 1.38 6.65 -51.93 -0.35 1.04 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.10 2.11 8.14 -51.93 -0.42 1.69 16 34 H 0.09 1.73 8.08 -51.93 -0.42 1.31 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.10 2.05 5.59 -51.93 -0.29 1.76 16 38 H 0.07 0.75 6.27 -51.93 -0.33 0.42 16 39 H 0.06 0.66 6.72 -51.93 -0.35 0.31 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.55 6.46 -51.93 -0.34 0.22 16 43 H 0.06 0.61 6.46 -51.93 -0.34 0.27 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -29.92 332.42 -7.47 -37.39 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.45 Total: 4.06 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -0.87 Total: -18.60 kcal Atomic # 7 Polarization: -26.06 SS G_CDS: 0.77 Total: -25.28 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.52 Total: -20.22 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.41 Total: 17.64 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.92 -7.47 -37.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461716.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.984 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds