Wall clock time and date at job start Mon Mar 30 2020 00:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47323 * 2 1 4 4 H 1.09000 * 109.46897 * 305.34965 * 3 2 1 5 5 C 1.52999 * 109.47505 * 185.34762 * 3 2 1 6 6 C 1.50703 * 109.46595 * 64.99960 * 5 3 2 7 7 O 1.20825 * 120.00253 * 359.97438 * 6 5 3 8 8 O 1.34238 * 119.99854 * 180.02562 * 6 5 3 9 9 C 1.45197 * 116.99765 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47443 * 29.99897 * 9 8 6 11 11 C 1.50704 * 109.46937 * 150.00211 * 9 8 6 12 12 H 1.07996 * 120.00110 * 114.57894 * 11 9 8 13 13 C 1.37878 * 119.99444 * 294.58113 * 11 9 8 14 14 N 1.31519 * 119.99802 * 184.37027 * 13 11 9 15 15 Si 1.86802 * 120.00471 * 4.36635 * 13 11 9 16 16 H 1.48501 * 109.46720 * 94.45154 * 15 13 11 17 17 H 1.48499 * 109.47027 * 214.45298 * 15 13 11 18 18 H 1.48497 * 109.46912 * 334.45410 * 15 13 11 19 19 C 1.52997 * 109.47068 * 269.99774 * 9 8 6 20 20 C 1.53002 * 117.50138 * 134.19985 * 19 9 8 21 21 C 1.52995 * 117.50252 * 65.53752 * 19 9 8 22 22 C 1.53003 * 109.47240 * 65.34785 * 3 2 1 23 23 C 1.52993 * 109.47384 * 185.08351 * 22 3 2 24 24 C 1.53007 * 109.46861 * 65.08413 * 22 3 2 25 25 H 1.09000 * 109.47340 * 184.62008 * 1 2 3 26 26 H 1.08999 * 109.47412 * 304.62300 * 1 2 3 27 27 H 1.09005 * 109.46986 * 64.61945 * 1 2 3 28 28 H 1.09001 * 109.47408 * 239.99706 * 2 1 3 29 29 H 1.09006 * 109.46975 * 119.99876 * 2 1 3 30 30 H 1.08994 * 109.47329 * 184.99631 * 5 3 2 31 31 H 1.08995 * 109.47316 * 305.00551 * 5 3 2 32 32 H 0.97003 * 120.00038 * 179.97438 * 14 13 11 33 33 H 1.09005 * 115.54775 * 279.86794 * 19 9 8 34 34 H 1.08994 * 117.49583 * 0.02562 * 20 19 9 35 35 H 1.08999 * 117.49926 * 145.02231 * 20 19 9 36 36 H 1.08997 * 117.50412 * 214.98199 * 21 19 9 37 37 H 1.09001 * 117.49619 * 0.02562 * 21 19 9 38 38 H 1.08997 * 109.46844 * 305.08827 * 22 3 2 39 39 H 1.09001 * 109.47106 * 294.74144 * 23 22 3 40 40 H 1.08995 * 109.47039 * 54.73996 * 23 22 3 41 41 H 1.08999 * 109.47593 * 174.73786 * 23 22 3 42 42 H 1.09005 * 109.46757 * 300.00155 * 24 22 3 43 43 H 1.08997 * 109.47314 * 60.00060 * 24 22 3 44 44 H 1.09003 * 109.47000 * 180.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6005 1.9832 -0.8382 5 6 3.5641 1.4446 -0.1344 6 6 3.9504 0.8851 -1.4794 7 8 3.0946 0.5215 -2.2509 8 8 5.2454 0.7898 -1.8198 9 6 5.5436 0.2419 -3.1309 10 1 4.7297 0.4770 -3.8167 11 6 6.8252 0.8438 -3.6472 12 1 7.6941 0.2196 -3.7942 13 6 6.8882 2.1915 -3.9317 14 7 7.9781 2.7011 -4.4628 15 14 5.4255 3.2934 -3.5630 16 1 5.6000 3.9169 -2.2266 17 1 5.3331 4.3556 -4.5967 18 1 4.1808 2.4836 -3.5727 19 6 5.6994 -1.2765 -3.0258 20 6 4.9919 -2.1338 -4.0772 21 6 4.4611 -2.0889 -2.6421 22 6 1.6427 2.1239 1.3110 23 6 2.0407 3.6003 1.2595 24 6 2.3607 1.4426 2.4778 25 1 -0.3634 -1.0243 0.0828 26 1 -0.3634 0.5839 0.8456 27 1 -0.3633 0.4405 -0.9285 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9352 2.4656 -0.0454 31 1 3.9992 0.8298 0.6534 32 1 8.0223 3.6492 -4.6633 33 1 6.6643 -1.6256 -2.6580 34 1 4.4158 -1.6160 -4.8439 35 1 5.4910 -3.0472 -4.4007 36 1 4.6112 -2.9727 -2.0222 37 1 3.5352 -1.5417 -2.4650 38 1 0.5648 2.0428 1.4505 39 1 3.1267 3.6825 1.2139 40 1 1.6039 4.0636 0.3749 41 1 1.6752 4.1066 2.1528 42 1 2.0771 0.3908 2.5145 43 1 3.4387 1.5237 2.3383 44 1 2.0774 1.9278 3.4119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461716.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:57 Heat of formation + Delta-G solvation = -105.701166 kcal Electronic energy + Delta-G solvation = -22117.694397 eV Core-core repulsion = 19034.521603 eV Total energy + Delta-G solvation = -3083.172794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59702 -39.33679 -37.95780 -36.70238 -34.86854 -33.21794 -31.59698 -30.28223 -28.02463 -26.16673 -25.01558 -23.29217 -23.11724 -22.27547 -21.10827 -19.57140 -19.21299 -18.65784 -17.65729 -17.32983 -16.43267 -15.89584 -15.73880 -15.46301 -15.11501 -14.89091 -14.52421 -14.37988 -14.04109 -13.70862 -13.59846 -13.31363 -13.17766 -12.91869 -12.80482 -12.60473 -12.40436 -12.29313 -12.15794 -12.00849 -11.96404 -11.78396 -11.45055 -11.30683 -11.27094 -11.18528 -11.06449 -11.00541 -10.80115 -10.71393 -8.51887 -6.62816 1.19533 1.22687 1.31140 1.45869 1.99147 2.18977 2.99629 3.01657 3.67719 3.80942 3.83807 3.93730 4.06704 4.11342 4.24116 4.29903 4.31955 4.39497 4.52924 4.56757 4.58546 4.73278 4.78987 4.81039 4.84955 4.86361 4.91739 4.97618 5.04860 5.11327 5.17298 5.19637 5.26051 5.29705 5.34850 5.36172 5.37258 5.51158 5.53755 5.65615 5.95181 6.15188 6.47564 7.05257 7.11652 8.61601 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.007227 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.174939 B = 3873.690094 C = 4916.833634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C -0.066 4.066 4 H 0.056 0.944 5 C -0.119 4.119 6 C 0.439 3.561 7 O -0.535 6.535 8 O -0.370 6.370 9 C 0.217 3.783 10 H 0.031 0.969 11 C -0.520 4.520 12 H 0.057 0.943 13 C 0.040 3.960 14 N -0.917 5.917 15 Si 0.930 3.070 16 H -0.257 1.257 17 H -0.283 1.283 18 H -0.263 1.263 19 C -0.169 4.169 20 C -0.161 4.161 21 C -0.177 4.177 22 C -0.085 4.085 23 C -0.156 4.156 24 C -0.153 4.153 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.274 0.726 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.240 -3.059 13.671 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C -0.084 4.084 4 H 0.074 0.926 5 C -0.156 4.156 6 C 0.284 3.716 7 O -0.427 6.427 8 O -0.288 6.288 9 C 0.165 3.835 10 H 0.049 0.951 11 C -0.556 4.556 12 H 0.076 0.924 13 C -0.162 4.162 14 N -0.555 5.555 15 Si 0.755 3.245 16 H -0.182 1.182 17 H -0.209 1.209 18 H -0.187 1.187 19 C -0.188 4.188 20 C -0.198 4.198 21 C -0.213 4.213 22 C -0.104 4.104 23 C -0.213 4.213 24 C -0.210 4.210 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.354 -3.028 13.343 19.830 hybrid contribution 0.081 0.719 -0.608 0.945 sum -14.272 -2.309 12.735 19.267 Atomic orbital electron populations 1.21738 0.94834 1.01915 1.01636 1.21712 0.96996 0.95629 1.02117 1.21036 0.91191 0.97649 0.98572 0.92552 1.21819 0.99143 1.03433 0.91225 1.24439 0.81567 0.75123 0.90462 1.90482 1.51418 1.47269 1.53491 1.86849 1.27137 1.74445 1.40355 1.20300 0.94866 0.89805 0.78541 0.95148 1.21163 0.98078 0.94762 1.41605 0.92438 1.25769 0.98341 0.99460 0.92646 1.69993 1.29217 1.14422 1.41859 0.86000 0.80520 0.78854 0.79120 1.18152 1.20877 1.18725 1.22489 0.97106 0.92777 1.06400 1.22920 1.03144 1.01523 0.92187 1.23174 0.97505 1.02288 0.98381 1.21152 1.01298 0.94639 0.93261 1.21964 1.01456 0.95813 1.02079 1.21980 1.00529 1.00967 0.97531 0.92302 0.91102 0.94102 0.93027 0.90754 0.87999 0.85913 0.91614 0.88353 0.89997 0.86600 0.87076 0.88976 0.89352 0.93008 0.93419 0.91008 0.91831 0.92637 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.78 71.98 0.70 -2.22 16 2 C -0.13 -3.09 5.06 30.59 0.15 -2.93 16 3 C -0.07 -1.66 1.28 -10.79 -0.01 -1.67 16 4 H 0.06 1.66 7.96 -2.39 -0.02 1.64 16 5 C -0.12 -3.51 4.49 29.85 0.13 -3.38 16 6 C 0.44 17.71 5.68 71.24 0.40 18.11 16 7 O -0.54 -23.17 10.63 21.97 0.23 -22.94 16 8 O -0.37 -17.42 8.21 -51.49 -0.42 -17.84 16 9 C 0.22 10.89 1.50 29.85 0.04 10.94 16 10 H 0.03 1.65 5.82 -2.39 -0.01 1.63 16 11 C -0.52 -30.24 9.35 25.60 0.24 -30.00 16 12 H 0.06 3.60 7.99 -2.91 -0.02 3.57 16 13 C 0.04 2.37 5.47 84.65 0.46 2.83 16 14 N -0.92 -56.09 13.96 21.45 0.30 -55.79 16 15 Si 0.93 46.22 25.95 68.60 1.78 48.00 16 16 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 18 H -0.26 -13.22 5.32 99.48 0.53 -12.69 16 19 C -0.17 -7.21 5.29 -10.80 -0.06 -7.26 16 20 C -0.16 -5.79 10.18 30.62 0.31 -5.48 16 21 C -0.18 -6.24 9.82 30.62 0.30 -5.94 16 22 C -0.09 -1.57 2.57 -10.79 -0.03 -1.60 16 23 C -0.16 -2.90 8.82 71.98 0.64 -2.27 16 24 C -0.15 -2.42 8.47 71.98 0.61 -1.81 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.16 6.28 -2.39 -0.01 1.15 16 27 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.05 1.59 5.88 -2.39 -0.01 1.57 16 29 H 0.07 1.55 6.33 -2.38 -0.02 1.53 16 30 H 0.10 2.93 6.46 -2.39 -0.02 2.92 16 31 H 0.12 3.08 6.65 -2.39 -0.02 3.06 16 32 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.10 4.18 8.14 -2.38 -0.02 4.16 16 34 H 0.08 3.09 8.08 -2.39 -0.02 3.07 16 35 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 36 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 37 H 0.09 3.52 5.59 -2.39 -0.01 3.51 16 38 H 0.09 1.43 6.27 -2.39 -0.01 1.42 16 39 H 0.05 1.03 6.72 -2.39 -0.02 1.01 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 0.95 6.46 -2.38 -0.02 0.94 16 43 H 0.05 0.93 6.46 -2.39 -0.02 0.92 16 44 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -66.36 332.42 6.58 -59.77 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.79 Total: 21.48 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 3.90 Total: -32.68 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.30 Total: -55.79 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.19 Total: -40.78 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.78 Total: 48.00 kcal Total: -66.36 6.58 -59.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461716.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.927 kcal (2) G-P(sol) polarization free energy of solvation -66.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds