Wall clock time and date at job start Mon Mar 30 2020 01:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 C 1.50698 * 109.47004 * 59.99614 * 3 2 1 5 5 O 1.21283 * 120.00472 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99538 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 3 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 N 1.46499 * 109.47198 * 179.97438 * 8 7 6 10 10 C 1.36936 * 119.99757 * 179.97438 * 9 8 7 11 11 H 1.07992 * 120.00476 * 0.02562 * 10 9 8 12 12 C 1.38817 * 119.99709 * 179.97438 * 10 9 8 13 13 N 1.31614 * 120.00323 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99862 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47174 * 90.00121 * 14 12 10 16 16 H 1.48506 * 109.46994 * 210.00426 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99871 * 14 12 10 18 18 C 1.52998 * 109.46652 * 119.99991 * 2 1 3 19 19 C 1.52999 * 109.47363 * 60.00174 * 18 2 1 20 20 C 1.52998 * 109.47306 * 59.99817 * 19 18 2 21 21 C 1.53006 * 109.46950 * 300.00173 * 20 19 18 22 22 C 1.52998 * 109.46935 * 239.99910 * 2 1 3 23 23 H 1.09001 * 109.46592 * 60.00382 * 1 2 3 24 24 H 1.09002 * 109.46680 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47127 * 300.00256 * 1 2 3 26 26 H 1.09003 * 109.46690 * 299.99964 * 3 2 1 27 27 H 1.08993 * 109.46773 * 180.02562 * 3 2 1 28 28 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 29 29 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 30 30 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 31 31 H 1.08995 * 109.46638 * 300.00121 * 8 7 6 32 32 H 1.09006 * 109.47139 * 60.00254 * 8 7 6 33 33 H 0.97000 * 120.00386 * 359.97438 * 9 8 7 34 34 H 0.96996 * 120.00458 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.46908 * 180.02562 * 18 2 1 36 36 H 1.09003 * 109.47244 * 299.99905 * 18 2 1 37 37 H 1.09001 * 109.47054 * 299.99844 * 19 18 2 38 38 H 1.08995 * 109.46838 * 179.97438 * 19 18 2 39 39 H 1.09001 * 109.47080 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47042 * 60.00020 * 20 19 18 41 41 H 1.09007 * 109.46697 * 299.99754 * 21 20 19 42 42 H 1.08998 * 109.46912 * 180.02562 * 21 20 19 43 43 H 1.08995 * 109.47540 * 59.99982 * 22 2 1 44 44 H 1.09001 * 109.46719 * 180.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5377 2.1529 1.2304 5 8 0.8407 1.5634 2.0290 6 7 1.8637 3.4431 1.4439 7 6 1.3704 4.1355 2.6369 8 6 1.8763 5.5795 2.6344 9 7 1.3824 6.2720 3.8272 10 6 1.7093 7.5844 4.0414 11 1 2.3308 8.1090 3.3309 12 6 1.2409 8.2408 5.1713 13 7 0.4822 7.6019 6.0365 14 14 1.6862 10.0313 5.4632 15 1 0.6624 10.9047 4.8355 16 1 1.7360 10.2973 6.9234 17 1 3.0145 10.3152 4.8629 18 6 2.0400 -0.7213 1.2493 19 6 1.5300 -2.1638 1.2493 20 6 2.0400 -2.8850 0.0001 21 6 1.5300 -2.1638 -1.2492 22 6 2.0400 -0.7213 -1.2492 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 2.4214 3.9145 0.8054 29 1 0.2803 4.1324 2.6342 30 1 1.7329 3.6251 3.5292 31 1 2.9662 5.5825 2.6372 32 1 1.5137 6.0899 1.7421 33 1 0.8239 5.8010 4.4652 34 1 0.1553 8.0604 6.8262 35 1 3.1300 -0.7209 1.2495 36 1 1.6766 -0.2074 2.1393 37 1 0.4400 -2.1637 1.2492 38 1 1.8936 -2.6776 2.1390 39 1 1.6770 -3.9128 0.0003 40 1 3.1300 -2.8851 0.0001 41 1 0.4400 -2.1638 -1.2492 42 1 1.8930 -2.6779 -2.1392 43 1 1.6767 -0.2075 -2.1392 44 1 3.1300 -0.7216 -1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131140946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:51 Heat of formation + Delta-G solvation = -54.910879 kcal Electronic energy + Delta-G solvation = -20713.751156 eV Core-core repulsion = 17665.073546 eV Total energy + Delta-G solvation = -3048.677611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.49477 -38.50753 -35.68410 -33.83096 -33.24793 -31.26095 -30.85003 -28.75261 -27.08854 -26.53351 -23.58452 -22.78466 -21.73085 -21.34002 -20.08734 -18.47595 -17.29706 -16.79738 -15.84083 -15.61410 -15.23353 -14.76654 -14.60236 -14.51996 -14.09396 -13.80957 -13.51824 -13.17295 -12.99090 -12.94369 -12.43561 -12.04695 -11.89801 -11.73982 -11.60794 -11.36223 -11.10771 -11.05836 -10.92134 -10.81510 -10.78577 -10.41679 -10.25927 -10.13294 -10.09022 -9.79499 -9.25617 -8.96484 -8.76231 -6.99929 -5.80125 -3.10841 2.78047 3.32728 3.41899 3.47176 3.48874 4.45055 4.53764 4.57155 4.61198 4.86732 4.95316 5.08383 5.21659 5.26988 5.31883 5.41444 5.45984 5.49439 5.50458 5.52883 5.57345 5.69065 5.79052 5.84588 5.88421 5.89459 5.96570 5.98799 6.02165 6.14562 6.16096 6.24614 6.30509 6.44448 6.51695 6.63981 6.70985 6.81338 7.65227 7.67887 8.37177 8.41817 9.48772 10.03785 10.38477 11.42514 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.056376 B = 0.002799 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.544093 B =10002.739402 C =10202.837349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.040 4.040 3 C -0.134 4.134 4 C 0.510 3.490 5 O -0.533 6.533 6 N -0.726 5.726 7 C 0.111 3.889 8 C 0.145 3.855 9 N -0.730 5.730 10 C -0.244 4.244 11 H 0.072 0.928 12 C -0.012 4.012 13 N -0.931 5.931 14 Si 0.910 3.090 15 H -0.289 1.289 16 H -0.290 1.290 17 H -0.281 1.281 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.109 4.109 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.398 0.602 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.023 0.977 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.005 -19.122 -16.319 25.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.040 4.040 3 C -0.174 4.174 4 C 0.297 3.703 5 O -0.410 6.410 6 N -0.377 5.377 7 C -0.013 4.013 8 C 0.016 3.984 9 N -0.375 5.375 10 C -0.375 4.375 11 H 0.090 0.910 12 C -0.209 4.209 13 N -0.579 5.579 14 Si 0.741 3.259 15 H -0.216 1.216 16 H -0.217 1.217 17 H -0.207 1.207 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.147 4.147 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.232 0.768 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.572 -19.367 -15.735 25.207 hybrid contribution 0.387 1.172 0.035 1.235 sum 3.959 -18.195 -15.699 24.356 Atomic orbital electron populations 1.22205 0.94156 1.01984 1.03008 1.20225 0.96429 0.92001 0.95352 1.21784 1.02259 0.96608 0.96743 1.20618 0.80402 0.81626 0.87703 1.90581 1.37820 1.65329 1.47312 1.46025 1.53488 1.12125 1.26071 1.21551 0.99502 0.93280 0.86954 1.20757 0.96656 0.89130 0.91813 1.42197 1.61474 1.10665 1.23160 1.19193 1.26125 0.87262 1.04931 0.91048 1.24784 1.00246 0.98492 0.97340 1.69663 1.38803 1.36206 1.13227 0.86149 0.77924 0.84726 0.77112 1.21617 1.21672 1.20705 1.21843 0.99472 0.95303 0.99209 1.21548 1.01110 0.95876 0.97112 1.21550 1.00510 0.98553 0.95083 1.21550 1.01121 0.95478 0.97548 1.21603 1.00340 0.95573 0.97138 0.93806 0.92570 0.89660 0.89101 0.89148 0.76805 0.91405 0.91392 0.95868 0.95889 0.78010 0.93346 0.93042 0.88840 0.91695 0.92461 0.92534 0.92334 0.91657 0.92444 0.92132 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 7.48 37.16 0.28 -1.43 16 2 C -0.04 -0.39 0.51 -154.51 -0.08 -0.47 16 3 C -0.13 -1.27 4.77 -27.88 -0.13 -1.40 16 4 C 0.51 6.78 7.24 -10.99 -0.08 6.70 16 5 O -0.53 -8.84 11.35 5.55 0.06 -8.77 16 6 N -0.73 -9.62 5.56 -60.29 -0.33 -9.96 16 7 C 0.11 1.90 5.79 -4.04 -0.02 1.87 16 8 C 0.14 2.84 6.37 -4.04 -0.03 2.81 16 9 N -0.73 -18.66 5.60 -59.91 -0.34 -18.99 16 10 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 11 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 12 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 13 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 14 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 18 C -0.12 -1.32 4.43 -26.73 -0.12 -1.44 16 19 C -0.12 -1.15 5.65 -26.73 -0.15 -1.30 16 20 C -0.12 -0.97 5.92 -26.73 -0.16 -1.12 16 21 C -0.12 -0.92 5.65 -26.73 -0.15 -1.07 16 22 C -0.11 -0.87 4.73 -26.73 -0.13 -0.99 16 23 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 25 H 0.08 1.17 5.51 -51.93 -0.29 0.88 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.40 4.16 8.47 -40.82 -0.35 3.81 16 29 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.39 10.45 7.67 -40.82 -0.31 10.13 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.29 5.51 -51.93 -0.29 1.00 16 37 H 0.06 0.66 6.43 -51.93 -0.33 0.32 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 335.44 15.07 5.05 5.05 Total: -1.00 -31.56 335.44 -8.48 -40.04 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.61 Total: 8.25 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -1.01 Total: -5.28 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.05 Total: -56.61 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.06 Total: -8.77 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.56 -8.48 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131140946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.870 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds