Wall clock time and date at job start Mon Mar 30 2020 01:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 C 1.50698 * 109.47004 * 59.99614 * 3 2 1 5 5 O 1.21283 * 120.00472 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99538 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 3 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 N 1.46499 * 109.47198 * 179.97438 * 8 7 6 10 10 C 1.36936 * 119.99757 * 179.97438 * 9 8 7 11 11 H 1.07992 * 120.00476 * 0.02562 * 10 9 8 12 12 C 1.38817 * 119.99709 * 179.97438 * 10 9 8 13 13 N 1.31614 * 120.00323 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99862 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47174 * 90.00121 * 14 12 10 16 16 H 1.48506 * 109.46994 * 210.00426 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99871 * 14 12 10 18 18 C 1.52998 * 109.46652 * 119.99991 * 2 1 3 19 19 C 1.52999 * 109.47363 * 60.00174 * 18 2 1 20 20 C 1.52998 * 109.47306 * 59.99817 * 19 18 2 21 21 C 1.53006 * 109.46950 * 300.00173 * 20 19 18 22 22 C 1.52998 * 109.46935 * 239.99910 * 2 1 3 23 23 H 1.09001 * 109.46592 * 60.00382 * 1 2 3 24 24 H 1.09002 * 109.46680 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47127 * 300.00256 * 1 2 3 26 26 H 1.09003 * 109.46690 * 299.99964 * 3 2 1 27 27 H 1.08993 * 109.46773 * 180.02562 * 3 2 1 28 28 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 29 29 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 30 30 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 31 31 H 1.08995 * 109.46638 * 300.00121 * 8 7 6 32 32 H 1.09006 * 109.47139 * 60.00254 * 8 7 6 33 33 H 0.97000 * 120.00386 * 359.97438 * 9 8 7 34 34 H 0.96996 * 120.00458 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.46908 * 180.02562 * 18 2 1 36 36 H 1.09003 * 109.47244 * 299.99905 * 18 2 1 37 37 H 1.09001 * 109.47054 * 299.99844 * 19 18 2 38 38 H 1.08995 * 109.46838 * 179.97438 * 19 18 2 39 39 H 1.09001 * 109.47080 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47042 * 60.00020 * 20 19 18 41 41 H 1.09007 * 109.46697 * 299.99754 * 21 20 19 42 42 H 1.08998 * 109.46912 * 180.02562 * 21 20 19 43 43 H 1.08995 * 109.47540 * 59.99982 * 22 2 1 44 44 H 1.09001 * 109.46719 * 180.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5377 2.1529 1.2304 5 8 0.8407 1.5634 2.0290 6 7 1.8637 3.4431 1.4439 7 6 1.3704 4.1355 2.6369 8 6 1.8763 5.5795 2.6344 9 7 1.3824 6.2720 3.8272 10 6 1.7093 7.5844 4.0414 11 1 2.3308 8.1090 3.3309 12 6 1.2409 8.2408 5.1713 13 7 0.4822 7.6019 6.0365 14 14 1.6862 10.0313 5.4632 15 1 0.6624 10.9047 4.8355 16 1 1.7360 10.2973 6.9234 17 1 3.0145 10.3152 4.8629 18 6 2.0400 -0.7213 1.2493 19 6 1.5300 -2.1638 1.2493 20 6 2.0400 -2.8850 0.0001 21 6 1.5300 -2.1638 -1.2492 22 6 2.0400 -0.7213 -1.2492 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 2.4214 3.9145 0.8054 29 1 0.2803 4.1324 2.6342 30 1 1.7329 3.6251 3.5292 31 1 2.9662 5.5825 2.6372 32 1 1.5137 6.0899 1.7421 33 1 0.8239 5.8010 4.4652 34 1 0.1553 8.0604 6.8262 35 1 3.1300 -0.7209 1.2495 36 1 1.6766 -0.2074 2.1393 37 1 0.4400 -2.1637 1.2492 38 1 1.8936 -2.6776 2.1390 39 1 1.6770 -3.9128 0.0003 40 1 3.1300 -2.8851 0.0001 41 1 0.4400 -2.1638 -1.2492 42 1 1.8930 -2.6779 -2.1392 43 1 1.6767 -0.2075 -2.1392 44 1 3.1300 -0.7216 -1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131140946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:50 Heat of formation + Delta-G solvation = -75.526921 kcal Electronic energy + Delta-G solvation = -20714.645135 eV Core-core repulsion = 17665.073546 eV Total energy + Delta-G solvation = -3049.571589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43524 -39.44892 -37.27259 -35.46082 -34.04331 -33.14091 -31.55546 -30.10860 -28.25061 -27.47050 -25.45632 -23.52022 -23.15236 -22.36992 -21.12451 -19.38796 -19.15108 -17.88380 -16.93565 -16.78296 -16.58663 -16.07517 -15.72580 -15.58310 -15.17217 -15.06700 -14.92511 -14.65218 -14.31900 -13.77034 -13.30446 -13.13626 -13.04683 -12.81432 -12.71919 -12.55369 -12.50178 -12.40424 -12.28967 -12.08732 -11.86543 -11.78428 -11.73022 -11.24752 -10.99943 -10.98425 -10.82485 -10.27339 -10.00715 -9.07954 -7.97976 -5.29582 1.47718 1.50297 1.58733 1.73519 2.19772 2.58133 3.36235 3.69845 3.77146 3.84987 4.00582 4.08905 4.18891 4.21900 4.27235 4.38191 4.50405 4.52887 4.57944 4.60382 4.72699 4.74559 4.78411 4.87970 4.97398 5.03442 5.09094 5.13556 5.19165 5.22471 5.26109 5.33409 5.39981 5.42259 5.48018 5.48395 5.56312 5.69001 5.80400 6.22904 6.64825 7.28883 7.38068 8.00990 8.23884 9.25840 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.056376 B = 0.002799 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.544093 B =10002.739402 C =10202.837349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.039 4.039 3 C -0.126 4.126 4 C 0.504 3.496 5 O -0.569 6.569 6 N -0.717 5.717 7 C 0.129 3.871 8 C 0.149 3.851 9 N -0.748 5.748 10 C -0.249 4.249 11 H 0.083 0.917 12 C -0.078 4.078 13 N -0.972 5.972 14 Si 0.980 3.020 15 H -0.285 1.285 16 H -0.296 1.296 17 H -0.265 1.265 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.104 4.104 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.415 0.585 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.373 0.627 34 H 0.252 0.748 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.645 -19.172 -19.017 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.040 4.040 3 C -0.165 4.165 4 C 0.293 3.707 5 O -0.449 6.449 6 N -0.370 5.370 7 C 0.004 3.996 8 C 0.022 3.978 9 N -0.392 5.392 10 C -0.380 4.380 11 H 0.101 0.899 12 C -0.270 4.270 13 N -0.622 5.622 14 Si 0.808 3.192 15 H -0.212 1.212 16 H -0.223 1.223 17 H -0.190 1.190 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.141 4.141 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.252 0.748 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.205 0.795 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.254 -19.423 -18.505 27.337 hybrid contribution -0.133 1.101 0.849 1.397 sum 5.121 -18.322 -17.656 25.955 Atomic orbital electron populations 1.22136 0.95313 1.01828 1.01745 1.20246 0.95479 0.92421 0.95846 1.21848 1.03643 0.95868 0.95185 1.21434 0.79570 0.81224 0.88487 1.90601 1.39382 1.66052 1.48872 1.45869 1.53699 1.12288 1.25134 1.21070 0.98247 0.92156 0.88100 1.20852 0.97070 0.89909 0.89942 1.42451 1.61547 1.10466 1.24694 1.19658 1.25223 0.88320 1.04800 0.89892 1.25693 1.00848 1.02988 0.97483 1.69836 1.40598 1.37961 1.13816 0.85048 0.78254 0.79399 0.76475 1.21231 1.22277 1.18976 1.21775 0.99700 0.95779 0.98514 1.21536 1.00466 0.95510 0.98189 1.21526 1.00786 0.98740 0.94277 1.21568 1.00850 0.95533 0.97802 1.21572 1.00970 0.95380 0.96180 0.92786 0.92279 0.93002 0.86554 0.86676 0.74792 0.93259 0.93258 0.94570 0.94572 0.79521 0.93877 0.92415 0.92331 0.92749 0.92825 0.91820 0.91769 0.92199 0.90868 0.90769 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 7.48 71.99 0.54 -2.71 16 2 C -0.04 -0.70 0.51 -52.18 -0.03 -0.73 16 3 C -0.13 -2.05 4.77 29.85 0.14 -1.91 16 4 C 0.50 13.04 7.24 87.66 0.63 13.68 16 5 O -0.57 -19.53 11.35 -3.04 -0.03 -19.56 16 6 N -0.72 -18.17 5.56 -463.05 -2.57 -20.75 16 7 C 0.13 4.46 5.79 86.38 0.50 4.96 16 8 C 0.15 5.73 6.37 86.38 0.55 6.28 16 9 N -0.75 -38.52 5.60 -343.45 -1.92 -40.45 16 10 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 11 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 12 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 13 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 14 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 15 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 16 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 C -0.12 -2.57 4.43 30.59 0.14 -2.43 16 19 C -0.12 -2.27 5.65 30.59 0.17 -2.09 16 20 C -0.12 -1.65 5.92 30.60 0.18 -1.47 16 21 C -0.12 -1.53 5.65 30.60 0.17 -1.35 16 22 C -0.10 -1.30 4.73 30.59 0.14 -1.16 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 1.18 4.81 -2.39 -0.01 1.17 16 25 H 0.05 1.47 5.51 -2.39 -0.01 1.46 16 26 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.42 7.64 8.47 -92.71 -0.79 6.85 16 29 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.37 20.82 7.67 -92.71 -0.71 20.11 16 34 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.69 5.51 -2.39 -0.01 1.67 16 37 H 0.05 1.12 6.43 -2.39 -0.02 1.11 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.83 6.43 -2.38 -0.02 0.82 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -69.37 335.44 1.72 -67.64 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -0.51 Total: 31.33 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 4.45 Total: -5.98 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -4.21 Total: -121.36 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.03 Total: -19.56 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -69.37 1.72 -67.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131140946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.883 kcal (2) G-P(sol) polarization free energy of solvation -69.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds