Wall clock time and date at job start Mon Mar 30 2020 01:11:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86796 * 120.00019 * 2 1
4 4 H 1.48497 * 109.47172 * 180.02562 * 3 2 1
5 5 H 1.48506 * 109.47132 * 299.99871 * 3 2 1
6 6 H 1.48501 * 109.47173 * 59.99992 * 3 2 1
7 7 C 1.38815 * 120.00086 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99842 * 179.97438 * 7 2 1
9 9 N 1.36939 * 119.99843 * 359.97438 * 7 2 1
10 10 C 1.46496 * 120.00077 * 179.97438 * 9 7 2
11 11 C 1.52992 * 109.47167 * 179.97438 * 10 9 7
12 12 N 1.46506 * 109.47161 * 179.97438 * 11 10 9
13 13 C 1.34773 * 119.99968 * 179.97438 * 12 11 10
14 14 O 1.21283 * 120.00360 * 359.73034 * 13 12 11
15 15 C 1.50706 * 120.00081 * 180.02562 * 13 12 11
16 16 C 1.53014 * 109.46882 * 299.72845 * 15 13 12
17 17 C 1.52991 * 109.46034 * 164.04647 * 16 15 13
18 18 C 1.52989 * 109.50626 * 315.98336 * 17 16 15
19 19 C 1.53005 * 109.46557 * 112.94043 * 18 17 16
20 20 C 1.53007 * 109.43118 * 284.04046 * 19 18 17
21 21 C 1.52991 * 109.48598 * 75.96225 * 20 19 18
22 22 C 1.52992 * 109.50474 * 247.06491 * 21 20 19
23 23 H 0.97001 * 119.99712 * 0.02562 * 1 2 3
24 24 H 0.97004 * 119.99914 * 0.02562 * 9 7 2
25 25 H 1.09004 * 109.46586 * 60.00104 * 10 9 7
26 26 H 1.08993 * 109.47302 * 300.00215 * 10 9 7
27 27 H 1.09004 * 109.47116 * 60.00633 * 11 10 9
28 28 H 1.08998 * 109.47794 * 300.00545 * 11 10 9
29 29 H 0.96998 * 119.99507 * 0.02562 * 12 11 10
30 30 H 1.08998 * 109.47012 * 59.72084 * 15 13 12
31 31 H 1.09006 * 109.47161 * 284.04187 * 16 15 13
32 32 H 1.09005 * 109.47439 * 44.04373 * 16 15 13
33 33 H 1.09006 * 109.46362 * 195.97820 * 17 16 15
34 34 H 1.08996 * 109.45727 * 75.99416 * 17 16 15
35 35 H 1.08998 * 109.47344 * 352.94027 * 18 17 16
36 36 H 1.09003 * 109.47098 * 232.93591 * 18 17 16
37 37 H 1.09003 * 109.47957 * 164.05630 * 19 18 17
38 38 H 1.08995 * 109.48746 * 44.03166 * 19 18 17
39 39 H 1.09006 * 109.46727 * 315.95936 * 20 19 18
40 40 H 1.08998 * 109.46763 * 195.96752 * 20 19 18
41 41 H 1.08997 * 109.46353 * 127.05556 * 21 20 19
42 42 H 1.09003 * 109.46203 * 7.07660 * 21 20 19
43 43 H 1.08996 * 109.47799 * 284.01480 * 22 21 20
44 44 H 1.08999 * 109.47104 * 164.00760 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7101 1.3464 -0.0006
5 1 1.8914 2.3964 -1.2126
6 1 1.8914 2.3964 1.2125
7 6 2.0103 -1.2022 -0.0005
8 1 3.0903 -1.2021 -0.0010
9 7 1.3256 -2.3881 -0.0005
10 6 2.0580 -3.6568 -0.0017
11 6 1.0638 -4.8196 -0.0008
12 7 1.7963 -6.0884 -0.0025
13 6 1.1224 -7.2556 -0.0016
14 8 -0.0904 -7.2556 0.0056
15 6 1.8759 -8.5608 -0.0028
16 6 2.7485 -8.6447 -1.2569
17 6 3.7935 -9.7476 -1.0778
18 6 4.4003 -9.6538 0.3235
19 6 3.9902 -10.8812 1.1398
20 6 2.5339 -10.7329 1.5853
21 6 1.6069 -11.0115 0.4005
22 6 0.8816 -9.7237 0.0055
23 1 -0.4850 0.8401 -0.0004
24 1 0.3555 -2.3881 -0.0005
25 1 2.6853 -3.7149 0.8879
26 1 2.6840 -3.7142 -0.8921
27 1 0.4362 -4.7617 -0.8901
28 1 0.4381 -4.7621 0.8898
29 1 2.7663 -6.0884 -0.0036
30 1 2.5076 -8.6164 0.8837
31 1 2.1232 -8.8732 -2.1201
32 1 3.2508 -7.6902 -1.4146
33 1 4.5800 -9.6273 -1.8229
34 1 3.3194 -10.7209 -1.2040
35 1 4.0381 -8.7518 0.8166
36 1 5.4869 -9.6148 0.2471
37 1 4.6317 -10.9652 2.0171
38 1 4.0933 -11.7766 0.5270
39 1 2.3662 -9.7184 1.9470
40 1 2.3246 -11.4430 2.3852
41 1 0.8752 -11.7688 0.6821
42 1 2.1949 -11.3710 -0.4440
43 1 0.0882 -9.5183 0.7241
44 1 0.4501 -9.8400 -0.9887
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001131145903.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:11:32
Heat of formation + Delta-G solvation = -42.068403 kcal
Electronic energy + Delta-G solvation = -20883.020028 eV
Core-core repulsion = 17834.899309 eV
Total energy + Delta-G solvation = -3048.120719 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.51392 -38.40976 -35.67431 -33.90702 -33.20695 -32.98790 -31.16341 -28.32023
-26.82191 -26.11148 -23.66825 -22.37094 -21.49530 -21.04344 -20.88640 -19.17325
-17.56318 -17.09758 -16.05245 -15.59436 -14.98078 -14.87809 -14.55367 -14.41942
-14.37036 -13.71573 -13.56786 -13.50074 -13.18631 -12.96558 -12.81314 -12.11863
-11.90921 -11.60030 -11.42654 -11.34168 -11.26047 -11.10413 -11.03421 -10.82876
-10.80327 -10.68059 -10.27309 -10.08211 -9.92388 -9.81995 -9.51031 -8.97371
-8.78343 -6.99295 -5.79756 -3.10430 2.79667 3.32741 3.41936 3.47600
3.49802 4.29824 4.51760 4.53924 4.59210 4.74843 4.78042 4.85846
4.92993 4.96291 5.02573 5.20347 5.39078 5.50090 5.50495 5.54236
5.61223 5.64495 5.67868 5.75442 5.78000 5.79815 5.85440 5.89998
5.97230 5.98338 6.10451 6.11696 6.17464 6.22583 6.30818 6.52778
6.71543 6.78089 7.66117 7.68596 8.37363 8.40967 9.49181 10.04237
10.38988 11.42936
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.035771 B = 0.003152 C = 0.003013
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 782.572889 B = 8881.380561 C = 9289.760811
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C -0.013 4.013
3 Si 0.910 3.090
4 H -0.280 1.280
5 H -0.291 1.291
6 H -0.291 1.291
7 C -0.243 4.243
8 H 0.072 0.928
9 N -0.730 5.730
10 C 0.145 3.855
11 C 0.110 3.890
12 N -0.724 5.724
13 C 0.511 3.489
14 O -0.543 6.543
15 C -0.125 4.125
16 C -0.111 4.111
17 C -0.126 4.126
18 C -0.131 4.131
19 C -0.119 4.119
20 C -0.131 4.131
21 C -0.127 4.127
22 C -0.100 4.100
23 H 0.256 0.744
24 H 0.386 0.614
25 H 0.024 0.976
26 H 0.024 0.976
27 H 0.067 0.933
28 H 0.068 0.932
29 H 0.398 0.602
30 H 0.118 0.882
31 H 0.069 0.931
32 H 0.067 0.933
33 H 0.062 0.938
34 H 0.075 0.925
35 H 0.072 0.928
36 H 0.060 0.940
37 H 0.059 0.941
38 H 0.063 0.937
39 H 0.071 0.929
40 H 0.059 0.941
41 H 0.060 0.940
42 H 0.073 0.927
43 H 0.073 0.927
44 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.820 -24.575 0.262 26.111
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.579 5.579
2 C -0.209 4.209
3 Si 0.741 3.259
4 H -0.205 1.205
5 H -0.218 1.218
6 H -0.218 1.218
7 C -0.374 4.374
8 H 0.090 0.910
9 N -0.375 5.375
10 C 0.017 3.983
11 C -0.013 4.013
12 N -0.376 5.376
13 C 0.297 3.703
14 O -0.420 6.420
15 C -0.146 4.146
16 C -0.149 4.149
17 C -0.163 4.163
18 C -0.168 4.168
19 C -0.157 4.157
20 C -0.168 4.168
21 C -0.164 4.164
22 C -0.138 4.138
23 H 0.066 0.934
24 H 0.220 0.780
25 H 0.041 0.959
26 H 0.041 0.959
27 H 0.086 0.914
28 H 0.086 0.914
29 H 0.232 0.768
30 H 0.135 0.865
31 H 0.087 0.913
32 H 0.085 0.915
33 H 0.081 0.919
34 H 0.093 0.907
35 H 0.090 0.910
36 H 0.079 0.921
37 H 0.077 0.923
38 H 0.082 0.918
39 H 0.090 0.910
40 H 0.077 0.923
41 H 0.079 0.921
42 H 0.091 0.909
43 H 0.092 0.908
44 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 8.064 -24.427 0.264 25.725
hybrid contribution 0.586 1.072 -0.012 1.222
sum 8.650 -23.355 0.252 24.907
Atomic orbital electron populations
1.69680 1.05160 1.25726 1.57295 1.24785 0.95567 0.97831 1.02703
0.86078 0.78727 0.83882 0.77238 1.20499 1.21774 1.21766 1.19243
0.91062 0.83866 1.43277 0.90984 1.42207 1.06020 0.99604 1.89668
1.20752 0.93509 0.85732 0.98333 1.21561 0.95439 0.81898 1.02448
1.45973 1.10331 1.06059 1.75201 1.20714 0.88200 0.85476 0.75928
1.90694 1.14141 1.87710 1.49505 1.21912 0.98339 0.92655 1.01670
1.21648 0.97022 0.99637 0.96572 1.21861 0.97952 0.99582 0.96934
1.21852 1.00316 0.98761 0.95866 1.21718 0.96212 0.98095 0.99665
1.21849 0.94718 1.02245 0.97973 1.21883 0.98607 0.97499 0.98433
1.21444 0.97121 0.92439 1.02782 0.93408 0.78010 0.95858 0.95855
0.91417 0.91399 0.76810 0.86525 0.91256 0.91459 0.91929 0.90687
0.90997 0.92079 0.92256 0.91833 0.91033 0.92256 0.92113 0.90913
0.90849 0.91553
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16
2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16
3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16
4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16
7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.01 16
8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16
9 N -0.73 -18.79 5.60 -59.92 -0.34 -19.12 16
10 C 0.14 2.88 6.37 -4.05 -0.03 2.85 16
11 C 0.11 1.94 5.79 -4.04 -0.02 1.92 16
12 N -0.72 -10.05 5.32 -60.29 -0.32 -10.38 16
13 C 0.51 7.33 7.14 -10.98 -0.08 7.25 16
14 O -0.54 -10.13 15.68 5.56 0.09 -10.04 16
15 C -0.13 -1.25 1.93 -91.76 -0.18 -1.43 16
16 C -0.11 -0.94 5.04 -26.73 -0.13 -1.07 16
17 C -0.13 -0.85 5.48 -26.74 -0.15 -1.00 16
18 C -0.13 -0.85 5.47 -26.73 -0.15 -1.00 16
19 C -0.12 -0.75 5.59 -26.72 -0.15 -0.90 16
20 C -0.13 -0.93 5.47 -26.73 -0.15 -1.08 16
21 C -0.13 -0.96 5.48 -26.74 -0.15 -1.11 16
22 C -0.10 -1.00 4.60 -26.73 -0.12 -1.13 16
23 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16
24 H 0.39 10.53 7.67 -40.82 -0.31 10.22 16
25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16
26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16
27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
29 H 0.40 4.39 7.83 -40.82 -0.32 4.07 16
30 H 0.12 1.03 2.83 -51.93 -0.15 0.88 16
31 H 0.07 0.62 7.82 -51.93 -0.41 0.22 16
32 H 0.07 0.57 7.22 -51.93 -0.37 0.19 16
33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16
34 H 0.07 0.49 4.69 -51.93 -0.24 0.24 16
35 H 0.07 0.50 5.47 -51.93 -0.28 0.21 16
36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
38 H 0.06 0.37 7.47 -51.93 -0.39 -0.01 16
39 H 0.07 0.57 5.47 -51.93 -0.28 0.29 16
40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
42 H 0.07 0.50 4.69 -51.93 -0.24 0.25 16
43 H 0.07 0.88 7.51 -51.93 -0.39 0.49 16
44 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16
LS Contribution 330.31 15.07 4.98 4.98
Total: -1.00 -32.56 330.31 -8.59 -41.14
By element:
Atomic # 1 Polarization: 15.09 SS G_CDS: -7.15 Total: 7.94 kcal
Atomic # 6 Polarization: -2.60 SS G_CDS: -1.54 Total: -4.15 kcal
Atomic # 7 Polarization: -57.30 SS G_CDS: 0.07 Total: -57.23 kcal
Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal
Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal
Total LS contribution 4.98 Total: 4.98 kcal
Total: -32.56 -8.59 -41.14 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001131145903.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.927 kcal
(2) G-P(sol) polarization free energy of solvation -32.557 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.483 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.068 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds