Wall clock time and date at job start Mon Mar 30 2020 01:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47132 * 299.99871 * 3 2 1 6 6 H 1.48501 * 109.47173 * 59.99992 * 3 2 1 7 7 C 1.38815 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99842 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00077 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47167 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99968 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00360 * 359.73034 * 13 12 11 15 15 C 1.50706 * 120.00081 * 180.02562 * 13 12 11 16 16 C 1.53014 * 109.46882 * 299.72845 * 15 13 12 17 17 C 1.52991 * 109.46034 * 164.04647 * 16 15 13 18 18 C 1.52989 * 109.50626 * 315.98336 * 17 16 15 19 19 C 1.53005 * 109.46557 * 112.94043 * 18 17 16 20 20 C 1.53007 * 109.43118 * 284.04046 * 19 18 17 21 21 C 1.52991 * 109.48598 * 75.96225 * 20 19 18 22 22 C 1.52992 * 109.50474 * 247.06491 * 21 20 19 23 23 H 0.97001 * 119.99712 * 0.02562 * 1 2 3 24 24 H 0.97004 * 119.99914 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.46586 * 60.00104 * 10 9 7 26 26 H 1.08993 * 109.47302 * 300.00215 * 10 9 7 27 27 H 1.09004 * 109.47116 * 60.00633 * 11 10 9 28 28 H 1.08998 * 109.47794 * 300.00545 * 11 10 9 29 29 H 0.96998 * 119.99507 * 0.02562 * 12 11 10 30 30 H 1.08998 * 109.47012 * 59.72084 * 15 13 12 31 31 H 1.09006 * 109.47161 * 284.04187 * 16 15 13 32 32 H 1.09005 * 109.47439 * 44.04373 * 16 15 13 33 33 H 1.09006 * 109.46362 * 195.97820 * 17 16 15 34 34 H 1.08996 * 109.45727 * 75.99416 * 17 16 15 35 35 H 1.08998 * 109.47344 * 352.94027 * 18 17 16 36 36 H 1.09003 * 109.47098 * 232.93591 * 18 17 16 37 37 H 1.09003 * 109.47957 * 164.05630 * 19 18 17 38 38 H 1.08995 * 109.48746 * 44.03166 * 19 18 17 39 39 H 1.09006 * 109.46727 * 315.95936 * 20 19 18 40 40 H 1.08998 * 109.46763 * 195.96752 * 20 19 18 41 41 H 1.08997 * 109.46353 * 127.05556 * 21 20 19 42 42 H 1.09003 * 109.46203 * 7.07660 * 21 20 19 43 43 H 1.08996 * 109.47799 * 284.01480 * 22 21 20 44 44 H 1.08999 * 109.47104 * 164.00760 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8196 -0.0008 12 7 1.7963 -6.0884 -0.0025 13 6 1.1224 -7.2556 -0.0016 14 8 -0.0904 -7.2556 0.0056 15 6 1.8759 -8.5608 -0.0028 16 6 2.7485 -8.6447 -1.2569 17 6 3.7935 -9.7476 -1.0778 18 6 4.4003 -9.6538 0.3235 19 6 3.9902 -10.8812 1.1398 20 6 2.5339 -10.7329 1.5853 21 6 1.6069 -11.0115 0.4005 22 6 0.8816 -9.7237 0.0055 23 1 -0.4850 0.8401 -0.0004 24 1 0.3555 -2.3881 -0.0005 25 1 2.6853 -3.7149 0.8879 26 1 2.6840 -3.7142 -0.8921 27 1 0.4362 -4.7617 -0.8901 28 1 0.4381 -4.7621 0.8898 29 1 2.7663 -6.0884 -0.0036 30 1 2.5076 -8.6164 0.8837 31 1 2.1232 -8.8732 -2.1201 32 1 3.2508 -7.6902 -1.4146 33 1 4.5800 -9.6273 -1.8229 34 1 3.3194 -10.7209 -1.2040 35 1 4.0381 -8.7518 0.8166 36 1 5.4869 -9.6148 0.2471 37 1 4.6317 -10.9652 2.0171 38 1 4.0933 -11.7766 0.5270 39 1 2.3662 -9.7184 1.9470 40 1 2.3246 -11.4430 2.3852 41 1 0.8752 -11.7688 0.6821 42 1 2.1949 -11.3710 -0.4440 43 1 0.0882 -9.5183 0.7241 44 1 0.4501 -9.8400 -0.9887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131145903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:32 Heat of formation + Delta-G solvation = -42.068403 kcal Electronic energy + Delta-G solvation = -20883.020028 eV Core-core repulsion = 17834.899309 eV Total energy + Delta-G solvation = -3048.120719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.51392 -38.40976 -35.67431 -33.90702 -33.20695 -32.98790 -31.16341 -28.32023 -26.82191 -26.11148 -23.66825 -22.37094 -21.49530 -21.04344 -20.88640 -19.17325 -17.56318 -17.09758 -16.05245 -15.59436 -14.98078 -14.87809 -14.55367 -14.41942 -14.37036 -13.71573 -13.56786 -13.50074 -13.18631 -12.96558 -12.81314 -12.11863 -11.90921 -11.60030 -11.42654 -11.34168 -11.26047 -11.10413 -11.03421 -10.82876 -10.80327 -10.68059 -10.27309 -10.08211 -9.92388 -9.81995 -9.51031 -8.97371 -8.78343 -6.99295 -5.79756 -3.10430 2.79667 3.32741 3.41936 3.47600 3.49802 4.29824 4.51760 4.53924 4.59210 4.74843 4.78042 4.85846 4.92993 4.96291 5.02573 5.20347 5.39078 5.50090 5.50495 5.54236 5.61223 5.64495 5.67868 5.75442 5.78000 5.79815 5.85440 5.89998 5.97230 5.98338 6.10451 6.11696 6.17464 6.22583 6.30818 6.52778 6.71543 6.78089 7.66117 7.68596 8.37363 8.40967 9.49181 10.04237 10.38988 11.42936 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035771 B = 0.003152 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.572889 B = 8881.380561 C = 9289.760811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.724 5.724 13 C 0.511 3.489 14 O -0.543 6.543 15 C -0.125 4.125 16 C -0.111 4.111 17 C -0.126 4.126 18 C -0.131 4.131 19 C -0.119 4.119 20 C -0.131 4.131 21 C -0.127 4.127 22 C -0.100 4.100 23 H 0.256 0.744 24 H 0.386 0.614 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.398 0.602 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.820 -24.575 0.262 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.013 4.013 12 N -0.376 5.376 13 C 0.297 3.703 14 O -0.420 6.420 15 C -0.146 4.146 16 C -0.149 4.149 17 C -0.163 4.163 18 C -0.168 4.168 19 C -0.157 4.157 20 C -0.168 4.168 21 C -0.164 4.164 22 C -0.138 4.138 23 H 0.066 0.934 24 H 0.220 0.780 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.232 0.768 30 H 0.135 0.865 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.064 -24.427 0.264 25.725 hybrid contribution 0.586 1.072 -0.012 1.222 sum 8.650 -23.355 0.252 24.907 Atomic orbital electron populations 1.69680 1.05160 1.25726 1.57295 1.24785 0.95567 0.97831 1.02703 0.86078 0.78727 0.83882 0.77238 1.20499 1.21774 1.21766 1.19243 0.91062 0.83866 1.43277 0.90984 1.42207 1.06020 0.99604 1.89668 1.20752 0.93509 0.85732 0.98333 1.21561 0.95439 0.81898 1.02448 1.45973 1.10331 1.06059 1.75201 1.20714 0.88200 0.85476 0.75928 1.90694 1.14141 1.87710 1.49505 1.21912 0.98339 0.92655 1.01670 1.21648 0.97022 0.99637 0.96572 1.21861 0.97952 0.99582 0.96934 1.21852 1.00316 0.98761 0.95866 1.21718 0.96212 0.98095 0.99665 1.21849 0.94718 1.02245 0.97973 1.21883 0.98607 0.97499 0.98433 1.21444 0.97121 0.92439 1.02782 0.93408 0.78010 0.95858 0.95855 0.91417 0.91399 0.76810 0.86525 0.91256 0.91459 0.91929 0.90687 0.90997 0.92079 0.92256 0.91833 0.91033 0.92256 0.92113 0.90913 0.90849 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.79 5.60 -59.92 -0.34 -19.12 16 10 C 0.14 2.88 6.37 -4.05 -0.03 2.85 16 11 C 0.11 1.94 5.79 -4.04 -0.02 1.92 16 12 N -0.72 -10.05 5.32 -60.29 -0.32 -10.38 16 13 C 0.51 7.33 7.14 -10.98 -0.08 7.25 16 14 O -0.54 -10.13 15.68 5.56 0.09 -10.04 16 15 C -0.13 -1.25 1.93 -91.76 -0.18 -1.43 16 16 C -0.11 -0.94 5.04 -26.73 -0.13 -1.07 16 17 C -0.13 -0.85 5.48 -26.74 -0.15 -1.00 16 18 C -0.13 -0.85 5.47 -26.73 -0.15 -1.00 16 19 C -0.12 -0.75 5.59 -26.72 -0.15 -0.90 16 20 C -0.13 -0.93 5.47 -26.73 -0.15 -1.08 16 21 C -0.13 -0.96 5.48 -26.74 -0.15 -1.11 16 22 C -0.10 -1.00 4.60 -26.73 -0.12 -1.13 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 24 H 0.39 10.53 7.67 -40.82 -0.31 10.22 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.40 4.39 7.83 -40.82 -0.32 4.07 16 30 H 0.12 1.03 2.83 -51.93 -0.15 0.88 16 31 H 0.07 0.62 7.82 -51.93 -0.41 0.22 16 32 H 0.07 0.57 7.22 -51.93 -0.37 0.19 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.49 4.69 -51.93 -0.24 0.24 16 35 H 0.07 0.50 5.47 -51.93 -0.28 0.21 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.37 7.47 -51.93 -0.39 -0.01 16 39 H 0.07 0.57 5.47 -51.93 -0.28 0.29 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.50 4.69 -51.93 -0.24 0.25 16 43 H 0.07 0.88 7.51 -51.93 -0.39 0.49 16 44 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16 LS Contribution 330.31 15.07 4.98 4.98 Total: -1.00 -32.56 330.31 -8.59 -41.14 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.15 Total: 7.94 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.54 Total: -4.15 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.07 Total: -57.23 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.56 -8.59 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131145903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.927 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds