Wall clock time and date at job start Mon Mar 30 2020 01:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47132 * 299.99871 * 3 2 1 6 6 H 1.48501 * 109.47173 * 59.99992 * 3 2 1 7 7 C 1.38815 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99842 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00077 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47167 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99968 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00360 * 359.73034 * 13 12 11 15 15 C 1.50706 * 120.00081 * 180.02562 * 13 12 11 16 16 C 1.53014 * 109.46882 * 299.72845 * 15 13 12 17 17 C 1.52991 * 109.46034 * 164.04647 * 16 15 13 18 18 C 1.52989 * 109.50626 * 315.98336 * 17 16 15 19 19 C 1.53005 * 109.46557 * 112.94043 * 18 17 16 20 20 C 1.53007 * 109.43118 * 284.04046 * 19 18 17 21 21 C 1.52991 * 109.48598 * 75.96225 * 20 19 18 22 22 C 1.52992 * 109.50474 * 247.06491 * 21 20 19 23 23 H 0.97001 * 119.99712 * 0.02562 * 1 2 3 24 24 H 0.97004 * 119.99914 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.46586 * 60.00104 * 10 9 7 26 26 H 1.08993 * 109.47302 * 300.00215 * 10 9 7 27 27 H 1.09004 * 109.47116 * 60.00633 * 11 10 9 28 28 H 1.08998 * 109.47794 * 300.00545 * 11 10 9 29 29 H 0.96998 * 119.99507 * 0.02562 * 12 11 10 30 30 H 1.08998 * 109.47012 * 59.72084 * 15 13 12 31 31 H 1.09006 * 109.47161 * 284.04187 * 16 15 13 32 32 H 1.09005 * 109.47439 * 44.04373 * 16 15 13 33 33 H 1.09006 * 109.46362 * 195.97820 * 17 16 15 34 34 H 1.08996 * 109.45727 * 75.99416 * 17 16 15 35 35 H 1.08998 * 109.47344 * 352.94027 * 18 17 16 36 36 H 1.09003 * 109.47098 * 232.93591 * 18 17 16 37 37 H 1.09003 * 109.47957 * 164.05630 * 19 18 17 38 38 H 1.08995 * 109.48746 * 44.03166 * 19 18 17 39 39 H 1.09006 * 109.46727 * 315.95936 * 20 19 18 40 40 H 1.08998 * 109.46763 * 195.96752 * 20 19 18 41 41 H 1.08997 * 109.46353 * 127.05556 * 21 20 19 42 42 H 1.09003 * 109.46203 * 7.07660 * 21 20 19 43 43 H 1.08996 * 109.47799 * 284.01480 * 22 21 20 44 44 H 1.08999 * 109.47104 * 164.00760 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8196 -0.0008 12 7 1.7963 -6.0884 -0.0025 13 6 1.1224 -7.2556 -0.0016 14 8 -0.0904 -7.2556 0.0056 15 6 1.8759 -8.5608 -0.0028 16 6 2.7485 -8.6447 -1.2569 17 6 3.7935 -9.7476 -1.0778 18 6 4.4003 -9.6538 0.3235 19 6 3.9902 -10.8812 1.1398 20 6 2.5339 -10.7329 1.5853 21 6 1.6069 -11.0115 0.4005 22 6 0.8816 -9.7237 0.0055 23 1 -0.4850 0.8401 -0.0004 24 1 0.3555 -2.3881 -0.0005 25 1 2.6853 -3.7149 0.8879 26 1 2.6840 -3.7142 -0.8921 27 1 0.4362 -4.7617 -0.8901 28 1 0.4381 -4.7621 0.8898 29 1 2.7663 -6.0884 -0.0036 30 1 2.5076 -8.6164 0.8837 31 1 2.1232 -8.8732 -2.1201 32 1 3.2508 -7.6902 -1.4146 33 1 4.5800 -9.6273 -1.8229 34 1 3.3194 -10.7209 -1.2040 35 1 4.0381 -8.7518 0.8166 36 1 5.4869 -9.6148 0.2471 37 1 4.6317 -10.9652 2.0171 38 1 4.0933 -11.7766 0.5270 39 1 2.3662 -9.7184 1.9470 40 1 2.3246 -11.4430 2.3852 41 1 0.8752 -11.7688 0.6821 42 1 2.1949 -11.3710 -0.4440 43 1 0.0882 -9.5183 0.7241 44 1 0.4501 -9.8400 -0.9887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131145903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:31 Heat of formation + Delta-G solvation = -63.569293 kcal Electronic energy + Delta-G solvation = -20883.952376 eV Core-core repulsion = 17834.899309 eV Total energy + Delta-G solvation = -3049.053068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.48571 -39.35076 -37.32480 -35.54136 -34.03260 -33.65776 -33.02959 -29.77250 -27.87881 -26.78232 -25.53473 -23.33412 -22.91902 -21.99948 -21.55154 -20.05328 -19.33274 -18.38174 -17.15429 -16.83806 -16.50203 -16.08725 -15.91654 -15.20286 -15.09346 -14.97643 -14.92874 -14.84600 -14.45997 -14.09243 -13.66294 -13.14060 -13.05699 -12.86340 -12.69983 -12.55947 -12.52063 -12.23945 -12.06048 -11.99204 -11.94012 -11.85702 -11.63690 -11.25788 -11.01895 -10.93934 -10.73279 -10.51020 -10.14151 -9.08455 -7.98174 -5.29938 1.48001 1.49534 1.59729 1.62211 2.11520 2.57373 3.36253 3.58978 3.73661 3.84567 3.99398 4.06138 4.13418 4.18193 4.20173 4.25691 4.29377 4.36160 4.40313 4.44612 4.56605 4.81255 4.88298 4.96805 5.02124 5.03823 5.05984 5.10695 5.11028 5.17551 5.27453 5.29942 5.38502 5.41628 5.45773 5.48724 5.52223 5.64910 5.69599 6.22608 6.54403 7.24525 7.28704 8.00100 8.23344 9.25815 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035771 B = 0.003152 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.572889 B = 8881.380561 C = 9289.760811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.248 4.248 8 H 0.084 0.916 9 N -0.748 5.748 10 C 0.150 3.850 11 C 0.127 3.873 12 N -0.712 5.712 13 C 0.507 3.493 14 O -0.591 6.591 15 C -0.113 4.113 16 C -0.109 4.109 17 C -0.121 4.121 18 C -0.132 4.132 19 C -0.117 4.117 20 C -0.131 4.131 21 C -0.120 4.120 22 C -0.099 4.099 23 H 0.252 0.748 24 H 0.373 0.627 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.415 0.585 30 H 0.135 0.865 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.557 -25.786 0.207 28.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.379 4.379 8 H 0.102 0.898 9 N -0.391 5.391 10 C 0.023 3.977 11 C 0.002 3.998 12 N -0.364 5.364 13 C 0.295 3.705 14 O -0.471 6.471 15 C -0.133 4.133 16 C -0.147 4.147 17 C -0.158 4.158 18 C -0.169 4.169 19 C -0.154 4.154 20 C -0.168 4.168 21 C -0.157 4.157 22 C -0.137 4.137 23 H 0.061 0.939 24 H 0.205 0.795 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.252 0.748 30 H 0.152 0.848 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.880 -25.682 0.209 27.892 hybrid contribution -0.269 1.365 0.010 1.391 sum 10.611 -24.317 0.218 26.532 Atomic orbital electron populations 1.69849 1.06894 1.26251 1.59192 1.25692 0.96446 1.01530 1.03310 0.84980 0.78353 0.79200 0.76621 1.18493 1.22040 1.22027 1.19700 0.91760 0.84820 1.41659 0.89820 1.42452 1.05755 1.01155 1.89771 1.20842 0.93555 0.84056 0.99251 1.21130 0.94844 0.83018 1.00823 1.45800 1.11083 1.04719 1.74816 1.21570 0.87865 0.86667 0.74387 1.90677 1.16459 1.88383 1.51569 1.21952 0.98158 0.89736 1.03475 1.21662 0.97099 1.00745 0.95186 1.21834 0.97535 0.98886 0.97505 1.21866 1.00896 0.98617 0.95524 1.21709 0.95352 0.98333 1.00019 1.21852 0.95384 1.01748 0.97852 1.21854 0.98727 0.95981 0.99175 1.21425 0.96807 0.93831 1.01663 0.93887 0.79517 0.94443 0.94428 0.93159 0.93139 0.74762 0.84771 0.91885 0.91117 0.90909 0.90179 0.91475 0.91158 0.91704 0.90974 0.92071 0.91721 0.91747 0.89587 0.93321 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 3 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 7 C -0.25 -13.81 9.99 84.03 0.84 -12.98 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.75 -38.61 5.60 -343.47 -1.92 -40.54 16 10 C 0.15 5.81 6.37 86.38 0.55 6.36 16 11 C 0.13 4.50 5.79 86.38 0.50 5.00 16 12 N -0.71 -19.22 5.32 -463.05 -2.46 -21.68 16 13 C 0.51 14.52 7.14 87.66 0.63 15.14 16 14 O -0.59 -22.74 15.68 -3.04 -0.05 -22.79 16 15 C -0.11 -2.15 1.93 -11.53 -0.02 -2.17 16 16 C -0.11 -1.64 5.04 30.60 0.15 -1.48 16 17 C -0.12 -1.27 5.48 30.59 0.17 -1.11 16 18 C -0.13 -1.31 5.47 30.59 0.17 -1.15 16 19 C -0.12 -1.12 5.59 30.60 0.17 -0.95 16 20 C -0.13 -1.60 5.47 30.59 0.17 -1.43 16 21 C -0.12 -1.62 5.48 30.59 0.17 -1.45 16 22 C -0.10 -1.96 4.60 30.59 0.14 -1.82 16 23 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 24 H 0.37 20.89 7.67 -92.71 -0.71 20.18 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.42 8.34 7.83 -92.71 -0.73 7.62 16 30 H 0.14 2.14 2.83 -2.39 -0.01 2.13 16 31 H 0.06 1.05 7.82 -2.38 -0.02 1.03 16 32 H 0.07 1.02 7.22 -2.38 -0.02 1.01 16 33 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.08 0.78 4.69 -2.39 -0.01 0.77 16 35 H 0.07 0.74 5.47 -2.39 -0.01 0.73 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 0.60 7.47 -2.39 -0.02 0.58 16 39 H 0.06 0.88 5.47 -2.38 -0.01 0.87 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 0.95 4.69 -2.39 -0.01 0.94 16 43 H 0.05 1.20 7.51 -2.39 -0.02 1.18 16 44 H 0.06 1.22 7.82 -2.39 -0.02 1.20 16 Total: -1.00 -70.55 330.31 1.54 -69.00 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: -0.43 Total: 30.28 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 4.10 Total: -2.04 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -4.10 Total: -122.38 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -70.55 1.54 -69.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131145903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.435 kcal (2) G-P(sol) polarization free energy of solvation -70.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds