Wall clock time and date at job start Mon Mar 30 2020 01:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48498 * 109.47283 * 239.99835 * 3 2 1 5 5 H 1.48499 * 109.47545 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47341 * 120.00064 * 3 2 1 7 7 C 1.38813 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00253 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46983 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.54246 * 108.89840 * 296.39500 * 16 15 13 18 18 C 1.50551 * 108.48820 * 159.17552 * 17 16 15 19 19 C 1.54059 * 112.41467 * 94.26568 * 18 17 16 20 20 C 1.54072 * 112.81751 * 318.28434 * 19 18 17 21 21 C 1.50475 * 112.49368 * 318.27849 * 20 19 18 22 22 C 1.45539 * 108.90122 * 173.60298 * 16 15 13 23 23 H 0.97001 * 119.99359 * 359.97438 * 1 2 3 24 24 H 0.97003 * 119.99763 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.46596 * 59.99748 * 10 9 7 26 26 H 1.09002 * 109.47129 * 300.00103 * 10 9 7 27 27 H 1.09001 * 109.46832 * 60.00052 * 11 10 9 28 28 H 1.09002 * 109.47153 * 300.00243 * 11 10 9 29 29 H 0.96995 * 120.00423 * 359.97438 * 12 11 10 30 30 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 31 31 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 32 32 H 1.09000 * 108.87638 * 54.99550 * 16 15 13 33 33 H 1.09001 * 109.62686 * 278.97938 * 17 16 15 34 34 H 1.09003 * 109.62383 * 39.54791 * 17 16 15 35 35 H 1.08998 * 108.91961 * 333.51164 * 18 17 16 36 36 H 1.08999 * 108.91653 * 215.01919 * 18 17 16 37 37 H 1.09000 * 108.81846 * 197.42154 * 19 18 17 38 38 H 1.09004 * 108.72528 * 79.08259 * 19 18 17 39 39 H 1.09003 * 108.87842 * 197.50758 * 20 19 18 40 40 H 1.08992 * 108.87850 * 79.05827 * 20 19 18 41 41 H 1.09002 * 109.62942 * 334.45043 * 21 20 19 42 42 H 1.09002 * 109.63043 * 213.86433 * 21 20 19 43 43 H 1.09005 * 108.89099 * 303.44891 * 22 16 15 44 44 H 1.09004 * 108.89303 * 62.02755 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 7 1.7962 -6.0884 0.0018 13 6 1.1222 -7.2556 0.0019 14 8 -0.0906 -7.2556 0.0020 15 6 1.8757 -8.5607 0.0031 16 6 0.8814 -9.7236 0.0036 17 6 0.0632 -9.6808 1.3105 18 6 -1.2098 -10.4571 1.1024 19 6 -1.0874 -11.9213 1.5655 20 6 0.2573 -12.5621 1.1716 21 6 0.6818 -12.1968 -0.2251 22 6 1.6152 -10.9713 -0.1486 23 1 -0.4849 0.8401 0.0004 24 1 0.3555 -2.3880 0.0005 25 1 2.6846 -3.7145 0.8905 26 1 2.6846 -3.7146 -0.8894 27 1 0.4367 -4.7621 -0.8886 28 1 0.4373 -4.7618 0.8914 29 1 2.7661 -6.0885 0.0014 30 1 2.5029 -8.6190 -0.8864 31 1 2.5017 -8.6181 0.8936 32 1 0.2029 -9.6078 -0.8415 33 1 0.6403 -10.1304 2.1186 34 1 -0.1759 -8.6468 1.5590 35 1 -1.4634 -10.4425 0.0424 36 1 -2.0123 -9.9762 1.6617 37 1 -1.8964 -12.4999 1.1197 38 1 -1.1883 -11.9549 2.6503 39 1 0.1648 -13.6461 1.2399 40 1 1.0243 -12.2307 1.8714 41 1 -0.1964 -11.9515 -0.8224 42 1 1.2134 -13.0343 -0.6771 43 1 2.2091 -10.9223 -1.0613 44 1 2.2857 -11.0925 0.7022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134410219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:16 Heat of formation + Delta-G solvation = -58.326198 kcal Electronic energy + Delta-G solvation = -20397.525765 eV Core-core repulsion = 17348.700055 eV Total energy + Delta-G solvation = -3048.825710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.20266 -38.55341 -35.68209 -33.81923 -33.78570 -32.19395 -31.25508 -28.95697 -27.12454 -24.95617 -24.05034 -23.13380 -21.45262 -20.58194 -20.02219 -19.40689 -17.32432 -16.79947 -15.93197 -15.79779 -15.47285 -14.82284 -14.72851 -14.51102 -14.08214 -13.86537 -13.28090 -13.15586 -13.05525 -12.99099 -12.66322 -12.50313 -12.26995 -11.82096 -11.37302 -11.09958 -10.92858 -10.81872 -10.80021 -10.72835 -10.67362 -10.51913 -10.45771 -10.23140 -10.14327 -9.81283 -9.52060 -8.96095 -8.77142 -6.99562 -5.79567 -3.10337 2.80462 3.33945 3.42633 3.47214 3.48565 4.38217 4.47467 4.57709 4.64296 4.80600 4.90361 4.93919 5.09638 5.17760 5.26584 5.26735 5.39484 5.49236 5.50441 5.55663 5.57963 5.66038 5.79132 5.79697 5.88350 5.93897 5.97490 5.98951 6.02786 6.09742 6.16156 6.16775 6.25618 6.40653 6.43723 6.55226 6.71502 6.78425 7.65053 7.68636 8.37674 8.41285 9.49211 10.04277 10.39009 11.43012 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.054961 B = 0.002654 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.330976 B =10545.767980 C =10870.838191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.111 3.889 12 N -0.727 5.727 13 C 0.508 3.492 14 O -0.537 6.537 15 C -0.140 4.140 16 C -0.070 4.070 17 C -0.113 4.113 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.113 4.113 23 H 0.257 0.743 24 H 0.386 0.614 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.398 0.602 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.836 -26.000 1.171 26.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.013 4.013 12 N -0.378 5.378 13 C 0.294 3.706 14 O -0.414 6.414 15 C -0.181 4.181 16 C -0.089 4.089 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.151 4.151 23 H 0.067 0.933 24 H 0.220 0.780 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.232 0.768 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.068 -25.849 1.173 26.057 hybrid contribution 0.687 1.030 -0.007 1.238 sum 3.755 -24.819 1.166 25.128 Atomic orbital electron populations 1.69661 1.05162 1.25970 1.57131 1.24786 0.95573 0.97835 1.02667 0.86216 0.78489 0.83279 0.77862 1.21189 1.21600 1.21181 1.19150 0.90999 0.83893 1.43536 0.91097 1.42192 1.06008 0.99595 1.89698 1.20755 0.93520 0.85743 0.98320 1.21547 0.95422 0.81918 1.02415 1.46012 1.10373 1.06143 1.75288 1.20659 0.88401 0.85419 0.76137 1.90692 1.13972 1.87590 1.49154 1.21862 0.99382 0.92681 1.04134 1.19869 0.96587 0.92682 0.99748 1.21472 0.95821 1.01557 0.96133 1.21255 0.98079 0.94165 1.01599 1.21947 0.96983 0.96111 1.00514 1.21334 0.97572 0.99585 0.97044 1.21304 0.99569 0.97300 0.97208 1.20555 0.98216 0.94475 1.01818 0.93298 0.78009 0.95876 0.95875 0.91425 0.91425 0.76797 0.89138 0.89084 0.90598 0.92541 0.90231 0.92114 0.92485 0.92661 0.92613 0.92758 0.92136 0.91522 0.92150 0.92316 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.75 5.60 -59.91 -0.34 -19.09 16 10 C 0.14 2.86 6.37 -4.04 -0.03 2.83 16 11 C 0.11 1.92 5.79 -4.04 -0.02 1.90 16 12 N -0.73 -9.78 5.56 -60.30 -0.33 -10.12 16 13 C 0.51 6.91 7.32 -10.98 -0.08 6.83 16 14 O -0.54 -9.37 14.05 5.56 0.08 -9.29 16 15 C -0.14 -1.30 5.10 -27.88 -0.14 -1.45 16 16 C -0.07 -0.67 1.39 -93.49 -0.13 -0.80 16 17 C -0.11 -1.19 4.62 -27.30 -0.13 -1.32 16 18 C -0.11 -1.15 5.32 -27.40 -0.15 -1.29 16 19 C -0.12 -0.97 5.85 -25.62 -0.15 -1.12 16 20 C -0.12 -0.87 5.31 -27.43 -0.15 -1.02 16 21 C -0.12 -0.86 5.61 -27.34 -0.15 -1.01 16 22 C -0.11 -0.86 4.44 -29.60 -0.13 -0.99 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 24 H 0.39 10.50 7.67 -40.82 -0.31 10.19 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.40 4.19 8.47 -40.82 -0.35 3.84 16 30 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.87 7.26 -51.93 -0.38 0.49 16 33 H 0.06 0.54 6.97 -51.93 -0.36 0.18 16 34 H 0.08 1.07 5.76 -51.93 -0.30 0.77 16 35 H 0.06 0.65 6.63 -51.93 -0.34 0.30 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.45 6.62 -51.93 -0.34 0.10 16 41 H 0.07 0.54 6.98 -51.93 -0.36 0.18 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.40 8.04 -51.93 -0.42 -0.01 16 44 H 0.06 0.43 7.46 -51.93 -0.39 0.04 16 LS Contribution 339.21 15.07 5.11 5.11 Total: -1.00 -32.15 339.21 -9.02 -41.18 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -7.74 Total: 7.51 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.50 Total: -4.92 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.05 Total: -56.95 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.15 -9.02 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134410219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.151 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds