Wall clock time and date at job start Mon Mar 30 2020 01:11:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86795 * 120.00118 * 2 1
4 4 H 1.48498 * 109.47283 * 239.99835 * 3 2 1
5 5 H 1.48499 * 109.47545 * 359.97438 * 3 2 1
6 6 H 1.48503 * 109.47341 * 120.00064 * 3 2 1
7 7 C 1.38813 * 119.99776 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00062 * 179.97438 * 7 2 1
9 9 N 1.36936 * 120.00059 * 0.02562 * 7 2 1
10 10 C 1.46500 * 120.00253 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47473 * 179.97438 * 10 9 7
12 12 N 1.46497 * 109.46983 * 180.02562 * 11 10 9
13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 10
14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11
15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11
16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12
17 17 C 1.54246 * 108.89840 * 296.39500 * 16 15 13
18 18 C 1.50551 * 108.48820 * 159.17552 * 17 16 15
19 19 C 1.54059 * 112.41467 * 94.26568 * 18 17 16
20 20 C 1.54072 * 112.81751 * 318.28434 * 19 18 17
21 21 C 1.50475 * 112.49368 * 318.27849 * 20 19 18
22 22 C 1.45539 * 108.90122 * 173.60298 * 16 15 13
23 23 H 0.97001 * 119.99359 * 359.97438 * 1 2 3
24 24 H 0.97003 * 119.99763 * 359.97438 * 9 7 2
25 25 H 1.09001 * 109.46596 * 59.99748 * 10 9 7
26 26 H 1.09002 * 109.47129 * 300.00103 * 10 9 7
27 27 H 1.09001 * 109.46832 * 60.00052 * 11 10 9
28 28 H 1.09002 * 109.47153 * 300.00243 * 11 10 9
29 29 H 0.96995 * 120.00423 * 359.97438 * 12 11 10
30 30 H 1.09002 * 109.47060 * 299.99722 * 15 13 12
31 31 H 1.09001 * 109.47380 * 59.99809 * 15 13 12
32 32 H 1.09000 * 108.87638 * 54.99550 * 16 15 13
33 33 H 1.09001 * 109.62686 * 278.97938 * 17 16 15
34 34 H 1.09003 * 109.62383 * 39.54791 * 17 16 15
35 35 H 1.08998 * 108.91961 * 333.51164 * 18 17 16
36 36 H 1.08999 * 108.91653 * 215.01919 * 18 17 16
37 37 H 1.09000 * 108.81846 * 197.42154 * 19 18 17
38 38 H 1.09004 * 108.72528 * 79.08259 * 19 18 17
39 39 H 1.09003 * 108.87842 * 197.50758 * 20 19 18
40 40 H 1.08992 * 108.87850 * 79.05827 * 20 19 18
41 41 H 1.09002 * 109.62942 * 334.45043 * 21 20 19
42 42 H 1.09002 * 109.63043 * 213.86433 * 21 20 19
43 43 H 1.09005 * 108.89099 * 303.44891 * 22 16 15
44 44 H 1.09004 * 108.89303 * 62.02755 * 22 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1040 1.6963 -1.2124
5 1 1.2853 2.7465 -0.0006
6 1 3.1040 1.6964 1.2125
7 6 2.0102 -1.2022 0.0005
8 1 3.0902 -1.2022 0.0001
9 7 1.3255 -2.3881 0.0005
10 6 2.0579 -3.6568 0.0005
11 6 1.0637 -4.8197 0.0012
12 7 1.7962 -6.0884 0.0018
13 6 1.1222 -7.2556 0.0019
14 8 -0.0906 -7.2556 0.0020
15 6 1.8757 -8.5607 0.0031
16 6 0.8814 -9.7236 0.0036
17 6 0.0632 -9.6808 1.3105
18 6 -1.2098 -10.4571 1.1024
19 6 -1.0874 -11.9213 1.5655
20 6 0.2573 -12.5621 1.1716
21 6 0.6818 -12.1968 -0.2251
22 6 1.6152 -10.9713 -0.1486
23 1 -0.4849 0.8401 0.0004
24 1 0.3555 -2.3880 0.0005
25 1 2.6846 -3.7145 0.8905
26 1 2.6846 -3.7146 -0.8894
27 1 0.4367 -4.7621 -0.8886
28 1 0.4373 -4.7618 0.8914
29 1 2.7661 -6.0885 0.0014
30 1 2.5029 -8.6190 -0.8864
31 1 2.5017 -8.6181 0.8936
32 1 0.2029 -9.6078 -0.8415
33 1 0.6403 -10.1304 2.1186
34 1 -0.1759 -8.6468 1.5590
35 1 -1.4634 -10.4425 0.0424
36 1 -2.0123 -9.9762 1.6617
37 1 -1.8964 -12.4999 1.1197
38 1 -1.1883 -11.9549 2.6503
39 1 0.1648 -13.6461 1.2399
40 1 1.0243 -12.2307 1.8714
41 1 -0.1964 -11.9515 -0.8224
42 1 1.2134 -13.0343 -0.6771
43 1 2.2091 -10.9223 -1.0613
44 1 2.2857 -11.0925 0.7022
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001134410219.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:11:16
Heat of formation + Delta-G solvation = -58.326198 kcal
Electronic energy + Delta-G solvation = -20397.525765 eV
Core-core repulsion = 17348.700055 eV
Total energy + Delta-G solvation = -3048.825710 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.20266 -38.55341 -35.68209 -33.81923 -33.78570 -32.19395 -31.25508 -28.95697
-27.12454 -24.95617 -24.05034 -23.13380 -21.45262 -20.58194 -20.02219 -19.40689
-17.32432 -16.79947 -15.93197 -15.79779 -15.47285 -14.82284 -14.72851 -14.51102
-14.08214 -13.86537 -13.28090 -13.15586 -13.05525 -12.99099 -12.66322 -12.50313
-12.26995 -11.82096 -11.37302 -11.09958 -10.92858 -10.81872 -10.80021 -10.72835
-10.67362 -10.51913 -10.45771 -10.23140 -10.14327 -9.81283 -9.52060 -8.96095
-8.77142 -6.99562 -5.79567 -3.10337 2.80462 3.33945 3.42633 3.47214
3.48565 4.38217 4.47467 4.57709 4.64296 4.80600 4.90361 4.93919
5.09638 5.17760 5.26584 5.26735 5.39484 5.49236 5.50441 5.55663
5.57963 5.66038 5.79132 5.79697 5.88350 5.93897 5.97490 5.98951
6.02786 6.09742 6.16156 6.16775 6.25618 6.40653 6.43723 6.55226
6.71502 6.78425 7.65053 7.68636 8.37674 8.41285 9.49211 10.04277
10.39009 11.43012
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.054961 B = 0.002654 C = 0.002575
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 509.330976 B =10545.767980 C =10870.838191
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C -0.012 4.012
3 Si 0.911 3.089
4 H -0.285 1.285
5 H -0.290 1.290
6 H -0.285 1.285
7 C -0.245 4.245
8 H 0.071 0.929
9 N -0.730 5.730
10 C 0.145 3.855
11 C 0.111 3.889
12 N -0.727 5.727
13 C 0.508 3.492
14 O -0.537 6.537
15 C -0.140 4.140
16 C -0.070 4.070
17 C -0.113 4.113
18 C -0.113 4.113
19 C -0.118 4.118
20 C -0.118 4.118
21 C -0.116 4.116
22 C -0.113 4.113
23 H 0.257 0.743
24 H 0.386 0.614
25 H 0.023 0.977
26 H 0.023 0.977
27 H 0.067 0.933
28 H 0.067 0.933
29 H 0.398 0.602
30 H 0.090 0.910
31 H 0.091 0.909
32 H 0.076 0.924
33 H 0.056 0.944
34 H 0.079 0.921
35 H 0.060 0.940
36 H 0.056 0.944
37 H 0.055 0.945
38 H 0.055 0.945
39 H 0.054 0.946
40 H 0.060 0.940
41 H 0.066 0.934
42 H 0.060 0.940
43 H 0.058 0.942
44 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.836 -26.000 1.171 26.308
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.579 5.579
2 C -0.209 4.209
3 Si 0.742 3.258
4 H -0.212 1.212
5 H -0.216 1.216
6 H -0.212 1.212
7 C -0.376 4.376
8 H 0.089 0.911
9 N -0.375 5.375
10 C 0.017 3.983
11 C -0.013 4.013
12 N -0.378 5.378
13 C 0.294 3.706
14 O -0.414 6.414
15 C -0.181 4.181
16 C -0.089 4.089
17 C -0.150 4.150
18 C -0.151 4.151
19 C -0.156 4.156
20 C -0.155 4.155
21 C -0.154 4.154
22 C -0.151 4.151
23 H 0.067 0.933
24 H 0.220 0.780
25 H 0.041 0.959
26 H 0.041 0.959
27 H 0.086 0.914
28 H 0.086 0.914
29 H 0.232 0.768
30 H 0.109 0.891
31 H 0.109 0.891
32 H 0.094 0.906
33 H 0.075 0.925
34 H 0.098 0.902
35 H 0.079 0.921
36 H 0.075 0.925
37 H 0.073 0.927
38 H 0.074 0.926
39 H 0.072 0.928
40 H 0.079 0.921
41 H 0.085 0.915
42 H 0.078 0.922
43 H 0.077 0.923
44 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 3.068 -25.849 1.173 26.057
hybrid contribution 0.687 1.030 -0.007 1.238
sum 3.755 -24.819 1.166 25.128
Atomic orbital electron populations
1.69661 1.05162 1.25970 1.57131 1.24786 0.95573 0.97835 1.02667
0.86216 0.78489 0.83279 0.77862 1.21189 1.21600 1.21181 1.19150
0.90999 0.83893 1.43536 0.91097 1.42192 1.06008 0.99595 1.89698
1.20755 0.93520 0.85743 0.98320 1.21547 0.95422 0.81918 1.02415
1.46012 1.10373 1.06143 1.75288 1.20659 0.88401 0.85419 0.76137
1.90692 1.13972 1.87590 1.49154 1.21862 0.99382 0.92681 1.04134
1.19869 0.96587 0.92682 0.99748 1.21472 0.95821 1.01557 0.96133
1.21255 0.98079 0.94165 1.01599 1.21947 0.96983 0.96111 1.00514
1.21334 0.97572 0.99585 0.97044 1.21304 0.99569 0.97300 0.97208
1.20555 0.98216 0.94475 1.01818 0.93298 0.78009 0.95876 0.95875
0.91425 0.91425 0.76797 0.89138 0.89084 0.90598 0.92541 0.90231
0.92114 0.92485 0.92661 0.92613 0.92758 0.92136 0.91522 0.92150
0.92316 0.92140
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16
2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16
3 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16
4 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16
5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16
6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16
8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16
9 N -0.73 -18.75 5.60 -59.91 -0.34 -19.09 16
10 C 0.14 2.86 6.37 -4.04 -0.03 2.83 16
11 C 0.11 1.92 5.79 -4.04 -0.02 1.90 16
12 N -0.73 -9.78 5.56 -60.30 -0.33 -10.12 16
13 C 0.51 6.91 7.32 -10.98 -0.08 6.83 16
14 O -0.54 -9.37 14.05 5.56 0.08 -9.29 16
15 C -0.14 -1.30 5.10 -27.88 -0.14 -1.45 16
16 C -0.07 -0.67 1.39 -93.49 -0.13 -0.80 16
17 C -0.11 -1.19 4.62 -27.30 -0.13 -1.32 16
18 C -0.11 -1.15 5.32 -27.40 -0.15 -1.29 16
19 C -0.12 -0.97 5.85 -25.62 -0.15 -1.12 16
20 C -0.12 -0.87 5.31 -27.43 -0.15 -1.02 16
21 C -0.12 -0.86 5.61 -27.34 -0.15 -1.01 16
22 C -0.11 -0.86 4.44 -29.60 -0.13 -0.99 16
23 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16
24 H 0.39 10.50 7.67 -40.82 -0.31 10.19 16
25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16
29 H 0.40 4.19 8.47 -40.82 -0.35 3.84 16
30 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16
31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16
32 H 0.08 0.87 7.26 -51.93 -0.38 0.49 16
33 H 0.06 0.54 6.97 -51.93 -0.36 0.18 16
34 H 0.08 1.07 5.76 -51.93 -0.30 0.77 16
35 H 0.06 0.65 6.63 -51.93 -0.34 0.30 16
36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
40 H 0.06 0.45 6.62 -51.93 -0.34 0.10 16
41 H 0.07 0.54 6.98 -51.93 -0.36 0.18 16
42 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16
43 H 0.06 0.40 8.04 -51.93 -0.42 -0.01 16
44 H 0.06 0.43 7.46 -51.93 -0.39 0.04 16
LS Contribution 339.21 15.07 5.11 5.11
Total: -1.00 -32.15 339.21 -9.02 -41.18
By element:
Atomic # 1 Polarization: 15.26 SS G_CDS: -7.74 Total: 7.51 kcal
Atomic # 6 Polarization: -3.42 SS G_CDS: -1.50 Total: -4.92 kcal
Atomic # 7 Polarization: -57.00 SS G_CDS: 0.05 Total: -56.95 kcal
Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.29 kcal
Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal
Total LS contribution 5.11 Total: 5.11 kcal
Total: -32.15 -9.02 -41.18 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001134410219.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.151 kcal
(2) G-P(sol) polarization free energy of solvation -32.153 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.303 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.326 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds