Wall clock time and date at job start Mon Mar 30 2020 01:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48498 * 109.47283 * 239.99835 * 3 2 1 5 5 H 1.48499 * 109.47545 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47341 * 120.00064 * 3 2 1 7 7 C 1.38813 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00253 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46983 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.54246 * 108.89840 * 296.39500 * 16 15 13 18 18 C 1.50551 * 108.48820 * 159.17552 * 17 16 15 19 19 C 1.54059 * 112.41467 * 94.26568 * 18 17 16 20 20 C 1.54072 * 112.81751 * 318.28434 * 19 18 17 21 21 C 1.50475 * 112.49368 * 318.27849 * 20 19 18 22 22 C 1.45539 * 108.90122 * 173.60298 * 16 15 13 23 23 H 0.97001 * 119.99359 * 359.97438 * 1 2 3 24 24 H 0.97003 * 119.99763 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.46596 * 59.99748 * 10 9 7 26 26 H 1.09002 * 109.47129 * 300.00103 * 10 9 7 27 27 H 1.09001 * 109.46832 * 60.00052 * 11 10 9 28 28 H 1.09002 * 109.47153 * 300.00243 * 11 10 9 29 29 H 0.96995 * 120.00423 * 359.97438 * 12 11 10 30 30 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 31 31 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 32 32 H 1.09000 * 108.87638 * 54.99550 * 16 15 13 33 33 H 1.09001 * 109.62686 * 278.97938 * 17 16 15 34 34 H 1.09003 * 109.62383 * 39.54791 * 17 16 15 35 35 H 1.08998 * 108.91961 * 333.51164 * 18 17 16 36 36 H 1.08999 * 108.91653 * 215.01919 * 18 17 16 37 37 H 1.09000 * 108.81846 * 197.42154 * 19 18 17 38 38 H 1.09004 * 108.72528 * 79.08259 * 19 18 17 39 39 H 1.09003 * 108.87842 * 197.50758 * 20 19 18 40 40 H 1.08992 * 108.87850 * 79.05827 * 20 19 18 41 41 H 1.09002 * 109.62942 * 334.45043 * 21 20 19 42 42 H 1.09002 * 109.63043 * 213.86433 * 21 20 19 43 43 H 1.09005 * 108.89099 * 303.44891 * 22 16 15 44 44 H 1.09004 * 108.89303 * 62.02755 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 7 1.7962 -6.0884 0.0018 13 6 1.1222 -7.2556 0.0019 14 8 -0.0906 -7.2556 0.0020 15 6 1.8757 -8.5607 0.0031 16 6 0.8814 -9.7236 0.0036 17 6 0.0632 -9.6808 1.3105 18 6 -1.2098 -10.4571 1.1024 19 6 -1.0874 -11.9213 1.5655 20 6 0.2573 -12.5621 1.1716 21 6 0.6818 -12.1968 -0.2251 22 6 1.6152 -10.9713 -0.1486 23 1 -0.4849 0.8401 0.0004 24 1 0.3555 -2.3880 0.0005 25 1 2.6846 -3.7145 0.8905 26 1 2.6846 -3.7146 -0.8894 27 1 0.4367 -4.7621 -0.8886 28 1 0.4373 -4.7618 0.8914 29 1 2.7661 -6.0885 0.0014 30 1 2.5029 -8.6190 -0.8864 31 1 2.5017 -8.6181 0.8936 32 1 0.2029 -9.6078 -0.8415 33 1 0.6403 -10.1304 2.1186 34 1 -0.1759 -8.6468 1.5590 35 1 -1.4634 -10.4425 0.0424 36 1 -2.0123 -9.9762 1.6617 37 1 -1.8964 -12.4999 1.1197 38 1 -1.1883 -11.9549 2.6503 39 1 0.1648 -13.6461 1.2399 40 1 1.0243 -12.2307 1.8714 41 1 -0.1964 -11.9515 -0.8224 42 1 1.2134 -13.0343 -0.6771 43 1 2.2091 -10.9223 -1.0613 44 1 2.2857 -11.0925 0.7022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134410219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:16 Heat of formation + Delta-G solvation = -79.408073 kcal Electronic energy + Delta-G solvation = -20398.439944 eV Core-core repulsion = 17348.700055 eV Total energy + Delta-G solvation = -3049.739889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.18473 -39.45450 -37.29346 -35.46105 -34.57042 -33.14950 -32.89629 -30.21433 -28.44140 -25.78466 -25.50939 -24.31120 -23.03755 -21.51981 -20.93411 -20.11920 -19.32334 -17.91978 -16.99509 -16.80428 -16.65494 -16.39244 -15.86799 -15.42972 -15.33937 -15.08418 -14.96405 -14.69707 -14.00790 -13.76382 -13.59630 -13.39759 -13.04848 -13.01064 -12.95943 -12.64507 -12.52559 -12.43089 -12.12822 -11.87583 -11.64217 -11.43878 -11.38360 -11.22434 -11.16290 -10.98759 -10.94591 -10.67268 -10.05956 -9.08207 -7.97895 -5.29672 1.47654 1.51646 1.57813 1.72273 2.19070 2.58218 3.36099 3.68520 3.76933 3.79853 4.00529 4.05864 4.16721 4.20680 4.25663 4.26453 4.39479 4.47736 4.53581 4.59541 4.60529 4.72981 4.81306 4.89331 4.98737 5.03444 5.11427 5.12880 5.20410 5.25794 5.35589 5.37157 5.40248 5.42937 5.44410 5.49043 5.58738 5.64807 5.68476 6.22772 6.62941 7.28695 7.34224 8.00747 8.23735 9.25733 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.054961 B = 0.002654 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.330976 B =10545.767980 C =10870.838191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.981 3.019 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.083 0.917 9 N -0.748 5.748 10 C 0.149 3.851 11 C 0.128 3.872 12 N -0.716 5.716 13 C 0.503 3.497 14 O -0.581 6.581 15 C -0.131 4.131 16 C -0.065 4.065 17 C -0.111 4.111 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.111 4.111 23 H 0.253 0.747 24 H 0.373 0.627 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.417 0.583 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.632 -27.542 1.226 28.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.809 3.191 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.381 4.381 8 H 0.101 0.899 9 N -0.392 5.392 10 C 0.023 3.977 11 C 0.003 3.997 12 N -0.369 5.369 13 C 0.291 3.709 14 O -0.461 6.461 15 C -0.170 4.170 16 C -0.084 4.084 17 C -0.148 4.148 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.148 4.148 23 H 0.061 0.939 24 H 0.205 0.795 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.253 0.747 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.938 -27.439 1.227 28.101 hybrid contribution -0.203 1.432 -0.022 1.446 sum 5.735 -26.007 1.205 26.659 Atomic orbital electron populations 1.69839 1.06897 1.26408 1.59084 1.25706 0.96456 1.01580 1.03292 0.85104 0.77097 0.78482 0.78403 1.20041 1.22294 1.20032 1.19629 0.91743 0.84876 1.41894 0.89868 1.42449 1.05744 1.01190 1.89797 1.20850 0.93605 0.84105 0.99172 1.21080 0.94770 0.83188 1.00654 1.45850 1.11169 1.04742 1.75161 1.21537 0.88129 0.86572 0.74629 1.90688 1.16257 1.88210 1.50948 1.21924 0.99122 0.89278 1.06697 1.19824 0.96351 0.94194 0.98003 1.21414 0.96391 0.99630 0.97362 1.21240 0.97578 0.95643 1.00646 1.21917 0.98092 0.94558 1.00670 1.21338 0.96763 1.00162 0.97124 1.21318 0.99284 0.97788 0.97073 1.20521 0.98147 0.93070 1.03070 0.93872 0.79542 0.94514 0.94501 0.93304 0.93314 0.74655 0.86305 0.86416 0.93021 0.91134 0.93475 0.93303 0.94030 0.92387 0.92280 0.91628 0.91696 0.92800 0.90683 0.90983 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.59 13.06 21.65 0.28 -60.31 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.25 -13.95 9.99 84.03 0.84 -13.12 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.75 -38.68 5.60 -343.45 -1.92 -40.60 16 10 C 0.15 5.77 6.37 86.38 0.55 6.32 16 11 C 0.13 4.48 5.79 86.38 0.50 4.98 16 12 N -0.72 -18.36 5.56 -463.06 -2.57 -20.93 16 13 C 0.50 13.30 7.32 87.66 0.64 13.94 16 14 O -0.58 -20.92 14.05 -3.03 -0.04 -20.96 16 15 C -0.13 -2.09 5.10 29.85 0.15 -1.93 16 16 C -0.06 -1.15 1.39 -12.65 -0.02 -1.17 16 17 C -0.11 -2.32 4.62 30.22 0.14 -2.18 16 18 C -0.11 -2.36 5.32 30.16 0.16 -2.20 16 19 C -0.11 -1.79 5.85 31.32 0.18 -1.61 16 20 C -0.12 -1.46 5.31 30.14 0.16 -1.30 16 21 C -0.12 -1.47 5.61 30.20 0.17 -1.30 16 22 C -0.11 -1.35 4.44 28.74 0.13 -1.22 16 23 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 24 H 0.37 20.90 7.67 -92.71 -0.71 20.19 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.42 7.63 8.47 -92.71 -0.79 6.85 16 30 H 0.12 1.30 8.05 -2.39 -0.02 1.28 16 31 H 0.12 1.33 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.18 7.26 -2.39 -0.02 1.16 16 33 H 0.07 1.25 6.97 -2.39 -0.02 1.23 16 34 H 0.05 1.30 5.76 -2.39 -0.01 1.29 16 35 H 0.05 1.11 6.63 -2.39 -0.02 1.09 16 36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.06 0.77 6.62 -2.39 -0.02 0.75 16 41 H 0.05 0.82 6.98 -2.39 -0.02 0.80 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.73 8.04 -2.38 -0.02 0.71 16 44 H 0.07 0.75 7.46 -2.38 -0.02 0.73 16 Total: -1.00 -70.86 339.21 1.33 -69.53 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -0.52 Total: 30.17 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 4.07 Total: -4.85 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -4.21 Total: -121.84 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.04 Total: -20.96 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -70.86 1.33 -69.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134410219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.882 kcal (2) G-P(sol) polarization free energy of solvation -70.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds