Wall clock time and date at job start Mon Mar 30 2020 01:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00201 * 2 1 4 4 H 1.48499 * 109.47513 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46768 * 299.99858 * 3 2 1 6 6 H 1.48501 * 109.47007 * 59.99455 * 3 2 1 7 7 C 1.37880 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99857 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47125 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47369 * 180.02562 * 11 10 9 13 13 C 1.34770 * 120.00477 * 180.02562 * 12 11 10 14 14 O 1.21289 * 119.99871 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00595 * 179.97438 * 13 12 11 16 16 C 1.53004 * 109.47487 * 179.97438 * 15 13 12 17 17 N 1.46898 * 109.46850 * 180.02562 * 16 15 13 18 18 C 1.46845 * 111.00565 * 45.79157 * 17 16 15 19 19 C 1.53034 * 109.52676 * 185.84030 * 18 17 16 20 20 C 1.53126 * 109.27454 * 300.81918 * 19 18 17 21 21 C 1.53119 * 109.16048 * 57.65518 * 20 19 18 22 22 C 1.46850 * 110.99813 * 170.00223 * 17 16 15 23 23 H 0.97001 * 119.99884 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47157 * 59.99619 * 9 7 2 25 25 H 1.09001 * 109.46773 * 300.00165 * 9 7 2 26 26 H 1.09004 * 109.47173 * 60.00532 * 10 9 7 27 27 H 1.08995 * 109.47488 * 299.99920 * 10 9 7 28 28 H 1.08997 * 109.47155 * 60.00068 * 11 10 9 29 29 H 1.09006 * 109.47235 * 299.99948 * 11 10 9 30 30 H 0.97007 * 119.99619 * 359.97438 * 12 11 10 31 31 H 1.09006 * 109.46822 * 60.00018 * 15 13 12 32 32 H 1.08999 * 109.46918 * 300.00498 * 15 13 12 33 33 H 1.08995 * 109.46637 * 59.99964 * 16 15 13 34 34 H 1.09001 * 109.46762 * 299.99921 * 16 15 13 35 35 H 1.08995 * 109.46315 * 65.81881 * 18 17 16 36 36 H 1.09005 * 109.45975 * 305.85394 * 18 17 16 37 37 H 1.08997 * 109.50792 * 180.88024 * 19 18 17 38 38 H 1.09006 * 109.50471 * 60.75677 * 19 18 17 39 39 H 1.08999 * 109.52028 * 177.55723 * 20 19 18 40 40 H 1.08993 * 109.52259 * 297.74866 * 20 19 18 41 41 H 1.09004 * 109.50440 * 62.28501 * 21 20 19 42 42 H 1.09003 * 109.50154 * 182.40625 * 21 20 19 43 43 H 1.09005 * 109.46186 * 54.13967 * 22 17 16 44 44 H 1.08998 * 109.46012 * 294.17361 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0018 13 6 1.9831 -7.3713 0.0019 14 8 0.7906 -7.5930 0.0020 15 6 2.9623 -8.5168 0.0020 16 6 2.1973 -9.8418 0.0027 17 7 3.1519 -10.9583 0.0034 18 6 4.2205 -10.7366 0.9859 19 6 5.2706 -11.8424 0.8579 20 6 4.6057 -13.2010 1.0969 21 6 3.4654 -13.3862 0.0919 22 6 2.4677 -12.2355 0.2422 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 0.8533 -5.0451 -0.8886 29 1 0.8539 -5.0446 0.8914 30 1 3.3860 -5.9234 0.0014 31 1 3.5890 -8.4589 0.8920 32 1 3.5889 -8.4590 -0.8880 33 1 1.5703 -9.8998 -0.8870 34 1 1.5710 -9.8992 0.8930 35 1 3.7986 -10.7510 1.9908 36 1 4.6877 -9.7691 0.8022 37 1 6.0556 -11.6863 1.5977 38 1 5.7028 -11.8198 -0.1426 39 1 5.3409 -13.9946 0.9639 40 1 4.2074 -13.2382 2.1107 41 1 3.8693 -13.3878 -0.9206 42 1 2.9607 -14.3329 0.2846 43 1 1.6618 -12.3567 -0.4818 44 1 2.0540 -12.2429 1.2506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142923258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:54 Heat of formation + Delta-G solvation = -66.406714 kcal Electronic energy + Delta-G solvation = -19897.151050 eV Core-core repulsion = 16847.974943 eV Total energy + Delta-G solvation = -3049.176107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.88746 -38.94102 -35.49837 -34.44633 -33.31954 -31.55327 -31.16787 -30.09279 -26.85216 -25.19972 -23.46226 -23.13078 -21.77155 -20.70789 -20.02953 -19.64952 -17.28665 -16.47326 -15.94107 -15.77069 -15.54911 -15.05634 -14.81271 -14.68552 -14.44574 -14.06541 -13.78618 -13.62586 -13.09564 -12.81410 -12.42661 -12.29459 -11.97559 -11.79386 -11.72343 -11.54898 -11.37284 -11.00342 -10.92892 -10.74673 -10.67882 -10.60977 -10.54874 -9.88190 -9.86978 -9.37138 -9.11085 -8.78476 -8.56793 -8.38658 -6.02991 -4.06089 2.77974 3.24864 3.29129 3.36688 3.40260 3.77564 4.43341 4.46982 4.47689 4.59642 4.72228 4.87682 4.91892 5.00476 5.11305 5.16936 5.28933 5.32826 5.36305 5.38563 5.55083 5.58045 5.60960 5.71456 5.72943 5.77791 5.78267 5.83296 5.89431 6.04133 6.15404 6.48414 6.58861 6.79521 6.81754 6.83129 6.99451 7.62589 7.70545 7.74840 7.95843 8.35809 8.40291 9.00854 9.58187 11.08330 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.053711 B = 0.002365 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.183511 B =11837.552052 C =12250.087676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.116 3.884 12 N -0.727 5.727 13 C 0.508 3.492 14 O -0.547 6.547 15 C -0.145 4.145 16 C 0.072 3.928 17 N -0.539 5.539 18 C 0.044 3.956 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.117 4.117 22 C 0.055 3.945 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.398 0.602 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.032 0.968 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.387 -25.497 1.449 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C -0.007 4.007 12 N -0.377 5.377 13 C 0.293 3.707 14 O -0.425 6.425 15 C -0.185 4.185 16 C -0.056 4.056 17 N -0.264 5.264 18 C -0.084 4.084 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.072 4.072 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.232 0.768 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.572 -25.548 0.990 27.300 hybrid contribution 0.489 1.186 0.827 1.527 sum 10.061 -24.362 1.817 26.420 Atomic orbital electron populations 1.69977 1.06062 1.26586 1.50638 1.25044 0.94873 0.99352 0.95295 0.86519 0.80033 0.83727 0.77605 1.19758 1.20987 1.21004 1.21241 0.93026 0.90926 1.50806 0.92585 1.19039 0.93874 0.90903 0.97660 1.21884 0.99746 0.93363 1.00855 1.21643 0.91921 0.85190 1.01944 1.46226 1.10803 1.05992 1.74700 1.20559 0.89627 0.84177 0.76305 1.90705 1.17057 1.84900 1.49831 1.21809 0.98720 0.93173 1.04801 1.21814 0.93347 0.87904 1.02503 1.62023 1.12511 1.02120 1.49765 1.22260 0.93090 0.99559 0.93447 1.21593 0.97316 0.94171 1.02413 1.21591 0.97893 0.97432 0.99116 1.21586 0.96372 0.97197 1.00287 1.22075 0.96329 0.89049 0.99793 0.92973 0.96268 0.96285 0.92764 0.92706 0.91784 0.91857 0.76790 0.88849 0.88068 0.89672 0.93947 0.94928 0.90024 0.91616 0.91035 0.91887 0.92375 0.91039 0.91632 0.90608 0.94886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.12 2.04 5.67 -4.04 -0.02 2.02 16 12 N -0.73 -10.18 5.56 -60.29 -0.33 -10.52 16 13 C 0.51 7.27 7.83 -10.99 -0.09 7.18 16 14 O -0.55 -10.13 15.98 5.55 0.09 -10.04 16 15 C -0.14 -1.45 4.95 -27.88 -0.14 -1.58 16 16 C 0.07 0.77 4.56 -3.82 -0.02 0.76 16 17 N -0.54 -4.99 4.81 -234.67 -1.13 -6.12 16 18 C 0.04 0.35 4.85 -3.84 -0.02 0.33 16 19 C -0.12 -0.80 6.09 -26.65 -0.16 -0.96 16 20 C -0.12 -0.79 6.00 -26.60 -0.16 -0.95 16 21 C -0.12 -0.80 6.09 -26.65 -0.16 -0.96 16 22 C 0.06 0.46 5.42 -3.83 -0.02 0.44 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.40 4.39 8.47 -40.82 -0.35 4.05 16 31 H 0.09 0.77 6.21 -51.93 -0.32 0.45 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 34 H 0.04 0.51 8.04 -51.93 -0.42 0.09 16 35 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.59 5.81 -51.93 -0.30 0.29 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.63 8.12 -51.93 -0.42 0.20 16 44 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 349.71 15.07 5.27 5.27 Total: -1.00 -32.10 349.71 -9.98 -42.08 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -8.11 Total: -1.83 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.48 Total: -9.17 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.73 Total: -42.77 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.10 -9.98 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142923258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.330 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds