Wall clock time and date at job start Mon Mar 30 2020 01:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00201 * 2 1 4 4 H 1.48499 * 109.47513 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46768 * 299.99858 * 3 2 1 6 6 H 1.48501 * 109.47007 * 59.99455 * 3 2 1 7 7 C 1.37880 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99857 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47125 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47369 * 180.02562 * 11 10 9 13 13 C 1.34770 * 120.00477 * 180.02562 * 12 11 10 14 14 O 1.21289 * 119.99871 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00595 * 179.97438 * 13 12 11 16 16 C 1.53004 * 109.47487 * 179.97438 * 15 13 12 17 17 N 1.46898 * 109.46850 * 180.02562 * 16 15 13 18 18 C 1.46845 * 111.00565 * 45.79157 * 17 16 15 19 19 C 1.53034 * 109.52676 * 185.84030 * 18 17 16 20 20 C 1.53126 * 109.27454 * 300.81918 * 19 18 17 21 21 C 1.53119 * 109.16048 * 57.65518 * 20 19 18 22 22 C 1.46850 * 110.99813 * 170.00223 * 17 16 15 23 23 H 0.97001 * 119.99884 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47157 * 59.99619 * 9 7 2 25 25 H 1.09001 * 109.46773 * 300.00165 * 9 7 2 26 26 H 1.09004 * 109.47173 * 60.00532 * 10 9 7 27 27 H 1.08995 * 109.47488 * 299.99920 * 10 9 7 28 28 H 1.08997 * 109.47155 * 60.00068 * 11 10 9 29 29 H 1.09006 * 109.47235 * 299.99948 * 11 10 9 30 30 H 0.97007 * 119.99619 * 359.97438 * 12 11 10 31 31 H 1.09006 * 109.46822 * 60.00018 * 15 13 12 32 32 H 1.08999 * 109.46918 * 300.00498 * 15 13 12 33 33 H 1.08995 * 109.46637 * 59.99964 * 16 15 13 34 34 H 1.09001 * 109.46762 * 299.99921 * 16 15 13 35 35 H 1.08995 * 109.46315 * 65.81881 * 18 17 16 36 36 H 1.09005 * 109.45975 * 305.85394 * 18 17 16 37 37 H 1.08997 * 109.50792 * 180.88024 * 19 18 17 38 38 H 1.09006 * 109.50471 * 60.75677 * 19 18 17 39 39 H 1.08999 * 109.52028 * 177.55723 * 20 19 18 40 40 H 1.08993 * 109.52259 * 297.74866 * 20 19 18 41 41 H 1.09004 * 109.50440 * 62.28501 * 21 20 19 42 42 H 1.09003 * 109.50154 * 182.40625 * 21 20 19 43 43 H 1.09005 * 109.46186 * 54.13967 * 22 17 16 44 44 H 1.08998 * 109.46012 * 294.17361 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0018 13 6 1.9831 -7.3713 0.0019 14 8 0.7906 -7.5930 0.0020 15 6 2.9623 -8.5168 0.0020 16 6 2.1973 -9.8418 0.0027 17 7 3.1519 -10.9583 0.0034 18 6 4.2205 -10.7366 0.9859 19 6 5.2706 -11.8424 0.8579 20 6 4.6057 -13.2010 1.0969 21 6 3.4654 -13.3862 0.0919 22 6 2.4677 -12.2355 0.2422 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 0.8533 -5.0451 -0.8886 29 1 0.8539 -5.0446 0.8914 30 1 3.3860 -5.9234 0.0014 31 1 3.5890 -8.4589 0.8920 32 1 3.5889 -8.4590 -0.8880 33 1 1.5703 -9.8998 -0.8870 34 1 1.5710 -9.8992 0.8930 35 1 3.7986 -10.7510 1.9908 36 1 4.6877 -9.7691 0.8022 37 1 6.0556 -11.6863 1.5977 38 1 5.7028 -11.8198 -0.1426 39 1 5.3409 -13.9946 0.9639 40 1 4.2074 -13.2382 2.1107 41 1 3.8693 -13.3878 -0.9206 42 1 2.9607 -14.3329 0.2846 43 1 1.6618 -12.3567 -0.4818 44 1 2.0540 -12.2429 1.2506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142923258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:53 Heat of formation + Delta-G solvation = -88.078194 kcal Electronic energy + Delta-G solvation = -19898.090796 eV Core-core repulsion = 16847.974943 eV Total energy + Delta-G solvation = -3050.115853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.94413 -39.76813 -37.01252 -35.21864 -35.17660 -33.12075 -31.94728 -31.01877 -28.56817 -26.16720 -24.83427 -23.96684 -22.74587 -22.31867 -20.97359 -20.53868 -18.57145 -18.25540 -17.02719 -16.87717 -16.59760 -16.42143 -16.12322 -15.75790 -15.27099 -15.13029 -14.74054 -14.37007 -14.26490 -14.08129 -13.77845 -13.61851 -13.40596 -13.05036 -12.78272 -12.68548 -12.55581 -12.34180 -12.22493 -12.07450 -11.68529 -11.60890 -11.56267 -11.25123 -11.24362 -11.13362 -10.82586 -10.57039 -10.09792 -9.30862 -8.20347 -6.31903 1.41598 1.41683 1.55062 1.63055 2.15565 2.42024 2.97260 3.13448 3.73758 3.86154 3.96525 4.00252 4.08431 4.16198 4.20296 4.22334 4.35230 4.48181 4.52217 4.54666 4.65908 4.68718 4.79708 4.92484 4.94181 4.94770 4.96995 5.00681 5.09738 5.12175 5.16407 5.26395 5.31773 5.44312 5.50689 5.52732 5.69693 5.83477 6.05579 6.15022 6.21334 6.58748 6.86061 7.26950 7.37850 8.92000 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.053711 B = 0.002365 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.183511 B =11837.552052 C =12250.087676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.129 3.871 12 N -0.715 5.715 13 C 0.506 3.494 14 O -0.594 6.594 15 C -0.129 4.129 16 C 0.076 3.924 17 N -0.540 5.540 18 C 0.039 3.961 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.113 4.113 22 C 0.051 3.949 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.417 0.583 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.027 0.973 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.381 -25.968 1.570 29.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.367 5.367 13 C 0.294 3.706 14 O -0.475 6.475 15 C -0.169 4.169 16 C -0.052 4.052 17 N -0.265 5.265 18 C -0.088 4.088 19 C -0.153 4.153 20 C -0.161 4.161 21 C -0.151 4.151 22 C -0.077 4.077 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.254 0.746 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 12.622 -26.038 1.112 28.958 hybrid contribution -0.487 1.279 0.794 1.582 sum 12.135 -24.759 1.905 27.639 Atomic orbital electron populations 1.70123 1.07976 1.27736 1.51782 1.26058 0.95778 1.03672 0.94826 0.85342 0.79218 0.78530 0.77598 1.18098 1.20602 1.20609 1.21713 0.93782 0.91954 1.50275 0.91435 1.18963 0.94504 0.93129 0.94994 1.21589 0.98380 0.91717 1.02197 1.21213 0.92089 0.85808 1.00457 1.45998 1.11216 1.05076 1.74375 1.21323 0.89684 0.84854 0.74767 1.90694 1.19450 1.85519 1.51851 1.21769 0.97613 0.90423 1.07067 1.21683 0.93533 0.89092 1.00890 1.62064 1.12308 1.01765 1.50372 1.22385 0.92898 1.00766 0.92780 1.21594 0.97173 0.93745 1.02747 1.21609 0.97909 0.97783 0.98776 1.21570 0.96237 0.96916 1.00340 1.22147 0.96817 0.89391 0.99321 0.92825 0.99053 0.99055 0.91275 0.91255 0.93449 0.93495 0.74560 0.86250 0.85742 0.91322 0.95800 0.95447 0.88884 0.90302 0.91189 0.90737 0.92548 0.91296 0.90565 0.91055 0.95460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 2 C -0.01 -0.34 5.46 84.66 0.46 0.13 16 3 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -30.07 9.11 25.60 0.23 -29.83 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 11 C 0.13 4.54 5.67 86.38 0.49 5.03 16 12 N -0.71 -18.92 5.56 -463.06 -2.57 -21.49 16 13 C 0.51 13.99 7.83 87.66 0.69 14.68 16 14 O -0.59 -22.38 15.98 -3.06 -0.05 -22.43 16 15 C -0.13 -2.30 4.95 29.85 0.15 -2.15 16 16 C 0.08 1.59 4.56 86.30 0.39 1.98 16 17 N -0.54 -9.30 4.81 -896.37 -4.31 -13.61 16 18 C 0.04 0.54 4.85 86.33 0.42 0.96 16 19 C -0.11 -1.28 6.09 30.65 0.19 -1.09 16 20 C -0.12 -1.34 6.00 30.68 0.18 -1.16 16 21 C -0.11 -1.39 6.09 30.65 0.19 -1.20 16 22 C 0.05 0.82 5.42 86.32 0.47 1.29 16 23 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 24 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 27 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.42 7.95 8.47 -92.70 -0.79 7.16 16 31 H 0.12 1.57 6.21 -2.38 -0.01 1.56 16 32 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 34 H 0.02 0.58 8.04 -2.39 -0.02 0.56 16 35 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.09 1.04 5.81 -2.38 -0.01 1.03 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 1.18 8.12 -2.38 -0.02 1.16 16 44 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -70.64 349.71 -0.29 -70.93 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.16 Total: 11.67 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 4.17 Total: -13.78 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -6.59 Total: -92.18 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.43 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -70.64 -0.29 -70.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142923258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.148 kcal (2) G-P(sol) polarization free energy of solvation -70.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds