Wall clock time and date at job start Mon Mar 30 2020 01:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48506 * 109.47205 * 269.99732 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99836 * 3 2 1 6 6 H 1.48505 * 109.47302 * 149.99637 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.47549 * 180.02562 * 9 7 2 11 11 O 1.21282 * 119.99684 * 0.02562 * 10 9 7 12 12 N 1.34767 * 120.00042 * 180.02562 * 10 9 7 13 13 C 1.46500 * 119.99818 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47373 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46997 * 180.02562 * 14 13 12 16 16 N 1.46906 * 109.46897 * 180.02562 * 15 14 13 17 17 C 1.46898 * 110.99888 * 179.97438 * 16 15 14 18 18 C 1.52995 * 109.47098 * 274.99671 * 17 16 15 19 19 C 1.52996 * 109.47141 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47347 * 60.00218 * 19 18 17 21 21 C 1.53004 * 109.46854 * 299.99842 * 20 19 18 22 22 C 1.52998 * 109.46733 * 155.00124 * 17 16 15 23 23 H 0.97005 * 120.00091 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47476 * 59.99992 * 9 7 2 25 25 H 1.09004 * 109.47043 * 300.00066 * 9 7 2 26 26 H 0.97003 * 120.00651 * 359.97438 * 12 10 9 27 27 H 1.09000 * 109.47175 * 59.99847 * 13 12 10 28 28 H 1.08996 * 109.47197 * 300.00089 * 13 12 10 29 29 H 1.09000 * 109.46866 * 59.99938 * 14 13 12 30 30 H 1.09001 * 109.46611 * 300.00055 * 14 13 12 31 31 H 1.09000 * 109.47486 * 60.00167 * 15 14 13 32 32 H 1.09001 * 109.47362 * 299.99445 * 15 14 13 33 33 H 1.00902 * 110.99923 * 303.95801 * 16 15 14 34 34 H 1.08996 * 109.47149 * 35.00177 * 17 16 15 35 35 H 1.09002 * 109.47229 * 300.00584 * 18 17 16 36 36 H 1.09000 * 109.47371 * 60.00269 * 18 17 16 37 37 H 1.09002 * 109.47270 * 300.00234 * 19 18 17 38 38 H 1.09007 * 109.47009 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.47093 * 180.02562 * 20 19 18 40 40 H 1.08996 * 109.47026 * 60.00239 * 20 19 18 41 41 H 1.08990 * 109.47208 * 300.00165 * 21 20 19 42 42 H 1.08997 * 109.46955 * 179.97438 * 21 20 19 43 43 H 1.09007 * 109.47319 * 299.99691 * 22 17 16 44 44 H 1.08996 * 109.47984 * 59.99944 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0140 -2.6148 0.0010 11 8 3.2259 -3.5366 0.0000 12 7 5.3390 -2.8610 0.0020 13 6 5.8274 -4.2422 0.0024 14 6 7.3574 -4.2422 0.0029 15 6 7.8674 -5.6847 0.0027 16 7 9.3365 -5.6846 0.0038 17 6 9.8629 -7.0561 0.0043 18 6 9.9273 -7.5771 1.4413 19 6 10.4762 -9.0052 1.4419 20 6 11.8800 -9.0123 0.8335 21 6 11.8156 -8.4913 -0.6037 22 6 11.2666 -7.0636 -0.6043 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 5.9694 -2.1237 0.0024 27 1 5.4647 -4.7561 -0.8878 28 1 5.4634 -4.7559 0.8921 29 1 7.7205 -3.7281 0.8929 30 1 7.7210 -3.7285 -0.8871 31 1 7.5044 -6.1983 -0.8875 32 1 7.5039 -6.1987 0.8925 33 1 9.6986 -5.1582 -0.7771 34 1 9.2077 -7.6969 -0.5856 35 1 10.5825 -6.9361 2.0312 36 1 8.9273 -7.5717 1.8750 37 1 9.8213 -9.6464 0.8519 38 1 10.5216 -9.3766 2.4657 39 1 12.2708 -10.0299 0.8335 40 1 12.5349 -8.3712 1.4234 41 1 11.1606 -9.1324 -1.1936 42 1 12.8157 -8.4960 -1.0370 43 1 11.2208 -6.6924 -1.6282 44 1 11.9219 -6.4227 -0.0145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143202988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:02 Heat of formation + Delta-G solvation = -73.203228 kcal Electronic energy + Delta-G solvation = -19782.589122 eV Core-core repulsion = 16733.118296 eV Total energy + Delta-G solvation = -3049.470826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.28742 -38.73955 -36.25189 -34.31648 -32.81270 -31.58360 -31.11594 -29.70806 -28.33516 -24.86076 -23.17286 -22.69673 -21.73325 -21.48686 -20.05081 -19.47700 -16.89410 -16.39018 -16.06380 -15.73471 -15.45301 -15.12067 -14.75823 -14.64576 -14.36052 -14.05547 -13.88315 -13.29243 -12.99959 -12.78031 -12.56674 -12.44140 -12.12885 -11.85290 -11.69417 -11.51539 -11.48416 -11.43930 -11.00541 -10.88199 -10.78440 -10.59787 -10.52507 -10.41099 -9.95735 -9.24022 -8.76711 -8.72359 -8.57663 -8.49633 -6.01049 -4.00510 3.27927 3.34507 3.36361 3.59699 3.64021 3.98954 4.32167 4.37026 4.42556 4.61981 4.80349 4.86008 4.89782 5.01518 5.05035 5.11600 5.14988 5.18831 5.23547 5.29488 5.42895 5.43874 5.57910 5.62262 5.66041 5.73256 5.78149 5.81141 5.86826 5.92739 5.98692 6.07878 6.12346 6.29150 6.63886 6.76056 6.94738 7.01337 7.09620 7.57298 8.17153 8.59306 9.13541 9.21182 9.57497 11.12008 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.053770 B = 0.002383 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.614159 B =11745.329432 C =12004.227391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.067 3.933 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.512 4.512 8 H 0.092 0.908 9 C -0.030 4.030 10 C 0.520 3.480 11 O -0.534 6.534 12 N -0.750 5.750 13 C 0.122 3.878 14 C -0.127 4.127 15 C 0.062 3.938 16 N -0.688 5.688 17 C 0.087 3.913 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.121 4.121 23 H 0.264 0.736 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.395 0.605 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.340 0.660 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.331 -14.542 -0.143 30.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.134 4.134 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.550 4.550 8 H 0.110 0.890 9 C -0.070 4.070 10 C 0.309 3.691 11 O -0.409 6.409 12 N -0.405 5.405 13 C -0.003 4.003 14 C -0.166 4.166 15 C -0.067 4.067 16 N -0.319 5.319 17 C -0.022 4.022 18 C -0.146 4.146 19 C -0.159 4.159 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.159 4.159 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.228 0.772 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.159 0.841 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 26.597 -15.033 0.538 30.556 hybrid contribution 0.505 1.041 -0.956 1.501 sum 27.102 -13.992 -0.418 30.503 Atomic orbital electron populations 1.69899 1.06177 1.26786 1.50801 1.24994 0.94820 0.98766 0.94843 0.86865 0.80312 0.84019 0.78514 1.20182 1.21151 1.19106 1.21010 0.87773 0.95680 1.50550 0.89020 1.19682 0.99615 0.89204 0.98461 1.21401 0.80420 0.93478 0.73809 1.90581 1.55216 1.47034 1.48033 1.46252 1.08066 1.07436 1.78739 1.21107 0.92468 0.84858 1.01879 1.21744 0.94777 0.96884 1.03164 1.21903 0.87245 0.96590 1.00990 1.60474 1.07497 1.13815 1.50107 1.21528 0.94999 0.89103 0.96579 1.21525 1.01421 0.95457 0.96159 1.21552 0.96431 0.97052 1.00859 1.21548 0.97251 1.00889 0.96091 1.21492 1.00917 0.96055 0.97064 1.21706 0.96245 0.97449 1.00488 0.92624 0.93615 0.94097 0.77200 0.92271 0.92032 0.90442 0.91566 0.94943 0.90642 0.84146 0.93902 0.91282 0.92028 0.92169 0.91835 0.92138 0.91878 0.92066 0.91862 0.92179 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.24 13.96 55.43 0.77 -27.46 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.51 -15.26 9.48 -34.44 -0.33 -15.59 16 8 H 0.09 3.11 7.00 -52.49 -0.37 2.74 16 9 C -0.03 -0.72 4.53 -29.04 -0.13 -0.85 16 10 C 0.52 11.69 7.82 -10.99 -0.09 11.60 16 11 O -0.53 -14.25 15.46 5.56 0.09 -14.17 16 12 N -0.75 -12.32 5.56 -60.29 -0.33 -12.65 16 13 C 0.12 1.70 5.67 -4.04 -0.02 1.68 16 14 C -0.13 -1.27 5.59 -26.73 -0.15 -1.42 16 15 C 0.06 0.57 5.48 -3.82 -0.02 0.55 16 16 N -0.69 -5.73 6.31 -106.73 -0.67 -6.41 16 17 C 0.09 0.67 2.49 -67.72 -0.17 0.50 16 18 C -0.11 -0.83 5.42 -26.74 -0.15 -0.98 16 19 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 20 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 21 C -0.12 -0.68 5.92 -26.75 -0.16 -0.84 16 22 C -0.12 -0.78 5.19 -26.75 -0.14 -0.92 16 23 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 24 H 0.05 1.04 7.20 -51.93 -0.37 0.66 16 25 H 0.04 0.91 7.57 -51.93 -0.39 0.52 16 26 H 0.39 5.25 8.47 -40.82 -0.35 4.90 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.30 8.06 -51.93 -0.42 -0.12 16 32 H 0.08 0.74 7.43 -51.93 -0.39 0.35 16 33 H 0.34 2.52 8.35 -39.29 -0.33 2.19 16 34 H 0.04 0.36 7.80 -51.93 -0.41 -0.05 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.52 7.45 -51.93 -0.39 0.14 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -33.98 347.89 -9.40 -43.38 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -8.07 Total: 1.79 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.76 Total: -6.18 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.23 Total: -46.52 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.09 Total: -14.17 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.98 -9.40 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.824 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds