Wall clock time and date at job start Mon Mar 30 2020 01:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48506 * 109.47205 * 269.99732 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99836 * 3 2 1 6 6 H 1.48505 * 109.47302 * 149.99637 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.47549 * 180.02562 * 9 7 2 11 11 O 1.21282 * 119.99684 * 0.02562 * 10 9 7 12 12 N 1.34767 * 120.00042 * 180.02562 * 10 9 7 13 13 C 1.46500 * 119.99818 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47373 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46997 * 180.02562 * 14 13 12 16 16 N 1.46906 * 109.46897 * 180.02562 * 15 14 13 17 17 C 1.46898 * 110.99888 * 179.97438 * 16 15 14 18 18 C 1.52995 * 109.47098 * 274.99671 * 17 16 15 19 19 C 1.52996 * 109.47141 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47347 * 60.00218 * 19 18 17 21 21 C 1.53004 * 109.46854 * 299.99842 * 20 19 18 22 22 C 1.52998 * 109.46733 * 155.00124 * 17 16 15 23 23 H 0.97005 * 120.00091 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47476 * 59.99992 * 9 7 2 25 25 H 1.09004 * 109.47043 * 300.00066 * 9 7 2 26 26 H 0.97003 * 120.00651 * 359.97438 * 12 10 9 27 27 H 1.09000 * 109.47175 * 59.99847 * 13 12 10 28 28 H 1.08996 * 109.47197 * 300.00089 * 13 12 10 29 29 H 1.09000 * 109.46866 * 59.99938 * 14 13 12 30 30 H 1.09001 * 109.46611 * 300.00055 * 14 13 12 31 31 H 1.09000 * 109.47486 * 60.00167 * 15 14 13 32 32 H 1.09001 * 109.47362 * 299.99445 * 15 14 13 33 33 H 1.00902 * 110.99923 * 303.95801 * 16 15 14 34 34 H 1.08996 * 109.47149 * 35.00177 * 17 16 15 35 35 H 1.09002 * 109.47229 * 300.00584 * 18 17 16 36 36 H 1.09000 * 109.47371 * 60.00269 * 18 17 16 37 37 H 1.09002 * 109.47270 * 300.00234 * 19 18 17 38 38 H 1.09007 * 109.47009 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.47093 * 180.02562 * 20 19 18 40 40 H 1.08996 * 109.47026 * 60.00239 * 20 19 18 41 41 H 1.08990 * 109.47208 * 300.00165 * 21 20 19 42 42 H 1.08997 * 109.46955 * 179.97438 * 21 20 19 43 43 H 1.09007 * 109.47319 * 299.99691 * 22 17 16 44 44 H 1.08996 * 109.47984 * 59.99944 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0140 -2.6148 0.0010 11 8 3.2259 -3.5366 0.0000 12 7 5.3390 -2.8610 0.0020 13 6 5.8274 -4.2422 0.0024 14 6 7.3574 -4.2422 0.0029 15 6 7.8674 -5.6847 0.0027 16 7 9.3365 -5.6846 0.0038 17 6 9.8629 -7.0561 0.0043 18 6 9.9273 -7.5771 1.4413 19 6 10.4762 -9.0052 1.4419 20 6 11.8800 -9.0123 0.8335 21 6 11.8156 -8.4913 -0.6037 22 6 11.2666 -7.0636 -0.6043 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 5.9694 -2.1237 0.0024 27 1 5.4647 -4.7561 -0.8878 28 1 5.4634 -4.7559 0.8921 29 1 7.7205 -3.7281 0.8929 30 1 7.7210 -3.7285 -0.8871 31 1 7.5044 -6.1983 -0.8875 32 1 7.5039 -6.1987 0.8925 33 1 9.6986 -5.1582 -0.7771 34 1 9.2077 -7.6969 -0.5856 35 1 10.5825 -6.9361 2.0312 36 1 8.9273 -7.5717 1.8750 37 1 9.8213 -9.6464 0.8519 38 1 10.5216 -9.3766 2.4657 39 1 12.2708 -10.0299 0.8335 40 1 12.5349 -8.3712 1.4234 41 1 11.1606 -9.1324 -1.1936 42 1 12.8157 -8.4960 -1.0370 43 1 11.2208 -6.6924 -1.6282 44 1 11.9219 -6.4227 -0.0145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143202988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:01 Heat of formation + Delta-G solvation = -98.198693 kcal Electronic energy + Delta-G solvation = -19783.673007 eV Core-core repulsion = 16733.118296 eV Total energy + Delta-G solvation = -3050.554711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50425 -39.80517 -37.19392 -35.48720 -35.00434 -32.73240 -31.68505 -31.44350 -29.23989 -26.18233 -24.50286 -23.57729 -22.47759 -22.32357 -21.18428 -20.54702 -19.03028 -17.62122 -17.14609 -16.96110 -16.58927 -16.21499 -16.05957 -15.50884 -15.42389 -15.10445 -14.89984 -14.72389 -14.12602 -13.97870 -13.80369 -13.30909 -13.10732 -13.01371 -12.85090 -12.55125 -12.46677 -12.37778 -12.24588 -12.00238 -11.83494 -11.80708 -11.53058 -11.43159 -11.15067 -10.95035 -10.78492 -10.59138 -10.01006 -9.39000 -8.25756 -6.34488 1.40413 1.45050 1.55626 1.86323 2.35650 2.39572 3.07494 3.13770 3.77962 3.84441 4.01503 4.02442 4.15142 4.21435 4.31347 4.37038 4.39249 4.50630 4.55023 4.61842 4.63282 4.69788 4.71256 4.73318 4.79008 4.96288 5.07018 5.09597 5.14600 5.17792 5.24123 5.28379 5.29427 5.35650 5.39721 5.49399 5.54720 5.58294 6.09503 6.25690 6.49827 6.70058 6.87309 7.26079 7.51474 8.91963 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.053770 B = 0.002383 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.614159 B =11745.329432 C =12004.227391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.228 1.228 7 C -0.536 4.536 8 H 0.026 0.974 9 C -0.028 4.028 10 C 0.517 3.483 11 O -0.590 6.590 12 N -0.723 5.723 13 C 0.120 3.880 14 C -0.110 4.110 15 C 0.067 3.933 16 N -0.689 5.689 17 C 0.087 3.913 18 C -0.106 4.106 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.116 4.116 23 H 0.268 0.732 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.416 0.584 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.066 0.934 33 H 0.348 0.652 34 H 0.036 0.964 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.071 -13.013 -0.424 33.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.198 4.198 3 Si 0.786 3.214 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.151 1.151 7 C -0.574 4.574 8 H 0.045 0.955 9 C -0.068 4.068 10 C 0.306 3.694 11 O -0.470 6.470 12 N -0.377 5.377 13 C -0.004 4.004 14 C -0.148 4.148 15 C -0.063 4.063 16 N -0.321 5.321 17 C -0.022 4.022 18 C -0.144 4.144 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.154 4.154 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.253 0.747 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.167 0.833 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 30.424 -13.513 0.256 33.290 hybrid contribution -0.704 0.444 -0.861 1.198 sum 29.719 -13.068 -0.605 32.471 Atomic orbital electron populations 1.70103 1.08849 1.28430 1.52124 1.26204 0.95855 1.04074 0.93686 0.85482 0.79792 0.76559 0.79608 1.18604 1.21222 1.15095 1.21195 0.91176 0.93643 1.51366 0.95534 1.19611 0.95690 0.90893 1.00614 1.21229 0.82024 0.92450 0.73718 1.90570 1.57190 1.48228 1.50992 1.45924 1.06255 1.09425 1.76118 1.21245 0.95254 0.82996 1.00900 1.21585 0.91264 0.97614 1.04298 1.21792 0.87989 0.95956 1.00592 1.60448 1.06688 1.14357 1.50562 1.21543 0.95674 0.88563 0.96422 1.21503 1.00625 0.96181 0.96128 1.21543 0.96918 0.96171 1.01156 1.21544 0.96610 1.01428 0.96073 1.21498 1.01396 0.95550 0.97021 1.21668 0.95196 0.97904 1.00652 0.92318 0.91095 0.91202 0.74747 0.93214 0.93281 0.89787 0.89811 0.95083 0.91508 0.83296 0.94617 0.91837 0.93254 0.92378 0.91549 0.91341 0.91843 0.92224 0.90872 0.91523 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.04 13.96 21.45 0.30 -61.74 16 2 C 0.00 -0.13 5.47 84.65 0.46 0.34 16 3 Si 0.96 42.38 27.47 68.60 1.88 44.26 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 5 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.23 -8.59 6.54 99.48 0.65 -7.94 16 7 C -0.54 -32.82 9.48 25.60 0.24 -32.57 16 8 H 0.03 1.92 7.00 -2.91 -0.02 1.89 16 9 C -0.03 -1.31 4.53 29.10 0.13 -1.18 16 10 C 0.52 23.05 7.82 87.66 0.69 23.74 16 11 O -0.59 -32.77 15.46 -3.04 -0.05 -32.82 16 12 N -0.72 -22.23 5.56 -463.06 -2.57 -24.80 16 13 C 0.12 3.21 5.67 86.38 0.49 3.70 16 14 C -0.11 -1.90 5.59 30.60 0.17 -1.73 16 15 C 0.07 1.13 5.48 86.30 0.47 1.60 16 16 N -0.69 -10.17 6.31 -491.58 -3.10 -13.27 16 17 C 0.09 1.22 2.49 44.91 0.11 1.34 16 18 C -0.11 -1.56 5.42 30.59 0.17 -1.39 16 19 C -0.12 -1.45 5.92 30.59 0.18 -1.27 16 20 C -0.12 -1.20 5.92 30.59 0.18 -1.02 16 21 C -0.12 -1.14 5.92 30.58 0.18 -0.96 16 22 C -0.12 -1.28 5.19 30.58 0.16 -1.12 16 23 H 0.27 16.01 8.31 -92.70 -0.77 15.24 16 24 H 0.07 2.95 7.20 -2.39 -0.02 2.93 16 25 H 0.07 2.86 7.57 -2.38 -0.02 2.84 16 26 H 0.42 9.43 8.47 -92.71 -0.79 8.65 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.03 0.54 8.06 -2.39 -0.02 0.52 16 32 H 0.07 1.26 7.43 -2.39 -0.02 1.24 16 33 H 0.35 4.26 8.35 -89.69 -0.75 3.51 16 34 H 0.04 0.56 7.80 -2.39 -0.02 0.54 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.05 0.83 7.45 -2.39 -0.02 0.81 16 37 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.75 8.14 -2.38 -0.02 0.74 16 39 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 0.65 8.12 -2.38 -0.02 0.63 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -78.46 347.89 -0.52 -78.98 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -0.62 Total: 19.92 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 3.64 Total: -10.52 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -5.37 Total: -99.81 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.05 Total: -32.82 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.26 kcal Total: -78.46 -0.52 -78.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.222 kcal (2) G-P(sol) polarization free energy of solvation -78.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds