Wall clock time and date at job start Mon Mar 30 2020 01:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47299 * 2 1 4 4 C 1.52998 * 109.47106 * 240.00025 * 2 1 3 5 5 N 1.46898 * 109.47359 * 184.67828 * 4 2 1 6 6 C 1.46849 * 110.99767 * 293.88414 * 5 4 2 7 7 C 1.53035 * 109.52036 * 174.15788 * 6 5 4 8 8 C 1.53123 * 109.28063 * 59.18357 * 7 6 5 9 9 C 1.52997 * 109.52601 * 182.37571 * 8 7 6 10 10 C 1.53119 * 109.15619 * 302.34347 * 8 7 6 11 11 C 1.46849 * 111.00259 * 169.67407 * 5 4 2 12 12 N 1.46505 * 109.46932 * 120.00450 * 2 1 3 13 13 C 1.34775 * 119.99620 * 279.08903 * 12 2 1 14 14 O 1.21285 * 120.00388 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99788 * 180.02562 * 13 12 2 16 16 C 1.50706 * 109.47340 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99634 * 359.97438 * 16 15 13 18 18 C 1.37877 * 120.00192 * 179.97438 * 16 15 13 19 19 N 1.31514 * 119.99857 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99813 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47323 * 89.99820 * 20 18 16 22 22 H 1.48503 * 109.46694 * 209.99796 * 20 18 16 23 23 H 1.48498 * 109.47258 * 329.99413 * 20 18 16 24 24 H 1.08995 * 109.47004 * 59.99807 * 1 2 3 25 25 H 1.08999 * 109.46816 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47030 * 299.99749 * 1 2 3 27 27 H 1.09002 * 109.47228 * 64.67600 * 4 2 1 28 28 H 1.09007 * 109.47648 * 304.67971 * 4 2 1 29 29 H 1.08998 * 109.46450 * 54.14865 * 6 5 4 30 30 H 1.08990 * 109.45623 * 294.17125 * 6 5 4 31 31 H 1.08996 * 109.50591 * 299.23743 * 7 6 5 32 32 H 1.09006 * 109.53768 * 179.13887 * 7 6 5 33 33 H 1.09000 * 109.52248 * 62.24663 * 8 7 6 34 34 H 1.09008 * 109.47083 * 59.86790 * 9 8 7 35 35 H 1.08999 * 109.47449 * 179.87308 * 9 8 7 36 36 H 1.09004 * 109.46871 * 299.87174 * 9 8 7 37 37 H 1.08997 * 109.50297 * 177.59619 * 10 8 7 38 38 H 1.09003 * 109.50318 * 297.70977 * 10 8 7 39 39 H 1.08998 * 109.45887 * 305.85606 * 11 5 4 40 40 H 1.08999 * 109.45902 * 65.83388 * 11 5 4 41 41 H 0.96992 * 120.00202 * 99.09402 * 12 2 1 42 42 H 1.08998 * 109.47005 * 299.99863 * 15 13 12 43 43 H 1.09002 * 109.47395 * 59.99387 * 15 13 12 44 44 H 0.96994 * 119.99572 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5047 -0.8199 -1.1941 6 6 4.1251 0.5082 -1.2815 7 6 5.6362 0.3812 -1.0752 8 6 6.2167 -0.5453 -2.1472 9 6 7.7178 -0.7235 -1.9108 10 6 5.5196 -1.9062 -2.0662 11 6 4.0119 -1.7130 -2.2437 12 7 2.0183 -0.6907 1.1962 13 6 2.0691 -0.0410 2.3759 14 8 1.7101 1.1153 2.4474 15 6 2.5719 -0.7513 3.6062 16 6 2.5270 0.1892 4.7829 17 1 2.1704 1.2003 4.6527 18 6 2.9411 -0.2411 6.0256 19 7 2.9024 0.5798 7.0523 20 14 3.5585 -1.9898 6.2506 21 1 5.0253 -2.0301 6.0224 22 1 3.2596 -2.4463 7.6317 23 1 2.8813 -2.8830 5.2766 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7467 -0.1613 -2.1373 28 1 1.6099 -1.7219 -1.2922 29 1 3.7067 1.1560 -0.5112 30 1 3.9274 0.9374 -2.2636 31 1 5.8350 -0.0352 -0.0878 32 1 6.0990 1.3649 -1.1552 33 1 6.0523 -0.1099 -3.1329 34 1 7.8812 -1.1588 -0.9249 35 1 8.1297 -1.3849 -2.6730 36 1 8.2119 0.2466 -1.9661 37 1 5.8984 -2.5566 -2.8545 38 1 5.7166 -2.3587 -1.0943 39 1 3.5110 -2.6784 -2.1722 40 1 3.8148 -1.2731 -3.2213 41 1 2.3052 -1.6155 1.1391 42 1 1.9413 -1.6169 3.8092 43 1 3.5982 -1.0800 3.4421 44 1 3.1941 0.2771 7.9265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:03 Heat of formation + Delta-G solvation = -56.343017 kcal Electronic energy + Delta-G solvation = -21394.892084 eV Core-core repulsion = 18346.152372 eV Total energy + Delta-G solvation = -3048.739713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.63149 -38.51079 -35.87440 -33.66438 -32.74722 -31.02368 -30.82984 -29.09697 -28.34497 -25.16429 -23.54007 -23.21234 -21.99757 -20.45638 -19.81228 -19.41218 -16.84655 -16.27759 -15.78670 -15.68635 -14.85016 -14.67570 -14.41557 -14.23459 -14.10036 -14.01780 -13.26700 -13.07790 -12.96895 -12.50255 -12.49515 -12.23127 -12.00308 -11.93661 -11.72759 -11.64227 -11.34202 -11.26168 -10.88160 -10.74402 -10.70211 -10.46565 -10.39230 -10.16914 -9.90255 -9.17744 -8.63835 -8.51586 -8.36866 -8.33179 -5.96354 -3.94871 3.31858 3.38986 3.39831 3.67914 3.79253 4.03541 4.47308 4.57794 4.66862 4.67700 4.83174 5.13228 5.16957 5.23310 5.29309 5.34555 5.38480 5.43552 5.51106 5.52210 5.54730 5.60198 5.67629 5.72920 5.79951 5.84314 5.93761 6.01392 6.06920 6.08928 6.12137 6.34551 6.39401 6.43318 6.74130 6.97185 7.03408 7.04449 7.24342 7.65246 8.34435 8.67169 9.22815 9.32192 9.63365 11.16898 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.005197 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.548016 B = 5386.747327 C = 6341.860947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.079 0.921 4 C 0.049 3.951 5 N -0.531 5.531 6 C 0.055 3.945 7 C -0.112 4.112 8 C -0.093 4.093 9 C -0.146 4.146 10 C -0.111 4.111 11 C 0.057 3.943 12 N -0.729 5.729 13 C 0.523 3.477 14 O -0.540 6.540 15 C -0.029 4.029 16 C -0.508 4.508 17 H 0.091 0.909 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.874 3.126 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.028 0.972 41 H 0.397 0.603 42 H 0.043 0.957 43 H 0.041 0.959 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.880 -6.752 -22.471 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.097 0.903 4 C -0.079 4.079 5 N -0.256 5.256 6 C -0.073 4.073 7 C -0.150 4.150 8 C -0.112 4.112 9 C -0.204 4.204 10 C -0.149 4.149 11 C -0.071 4.071 12 N -0.382 5.382 13 C 0.312 3.688 14 O -0.415 6.415 15 C -0.069 4.069 16 C -0.546 4.546 17 H 0.109 0.891 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.701 3.299 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.046 0.954 41 H 0.230 0.770 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.789 -6.081 -21.759 22.909 hybrid contribution 0.269 -1.035 -0.615 1.234 sum 4.058 -7.116 -22.374 23.826 Atomic orbital electron populations 1.22157 0.95680 1.01847 1.02444 1.20753 0.93262 0.97280 0.84566 0.90302 1.22420 0.87740 1.01021 0.96747 1.61840 1.04886 1.11632 1.47242 1.22125 0.95127 0.90084 0.99941 1.21644 0.94196 0.99317 0.99836 1.21176 0.95108 0.96018 0.98858 1.21811 0.95285 1.01469 1.01789 1.21642 0.93920 0.96829 1.02510 1.22071 0.95933 0.96879 0.92205 1.46080 1.68218 1.16104 1.07845 1.21298 0.76262 0.87089 0.84169 1.90563 1.47742 1.17826 1.85410 1.19654 0.97185 0.97786 0.92289 1.21025 1.42938 1.00229 0.90417 0.89073 1.24979 0.95452 0.97075 0.95870 1.69901 1.48210 1.35414 1.00380 0.86886 0.79578 0.85812 0.77576 1.20223 1.21269 1.19114 0.92532 0.92705 0.91317 0.93953 0.90349 0.90053 0.95382 0.90637 0.91688 0.91943 0.92388 0.92993 0.92797 0.91886 0.90817 0.90882 0.95361 0.76980 0.93920 0.94157 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.41 37.16 0.35 -1.79 16 2 C 0.15 2.07 2.32 -67.93 -0.16 1.92 16 3 H 0.08 1.28 6.23 -51.93 -0.32 0.96 16 4 C 0.05 0.53 4.49 -3.83 -0.02 0.51 16 5 N -0.53 -5.98 4.39 -234.67 -1.03 -7.01 16 6 C 0.05 0.65 5.29 -3.83 -0.02 0.63 16 7 C -0.11 -1.24 5.38 -26.65 -0.14 -1.39 16 8 C -0.09 -0.86 2.79 -90.50 -0.25 -1.11 16 9 C -0.15 -1.24 9.20 37.16 0.34 -0.90 16 10 C -0.11 -1.00 5.38 -26.65 -0.14 -1.14 16 11 C 0.06 0.53 5.46 -3.83 -0.02 0.51 16 12 N -0.73 -12.10 4.85 -53.80 -0.26 -12.36 16 13 C 0.52 11.67 7.73 -10.99 -0.08 11.58 16 14 O -0.54 -14.14 14.94 5.55 0.08 -14.05 16 15 C -0.03 -0.71 4.53 -29.03 -0.13 -0.84 16 16 C -0.51 -15.18 9.48 -34.44 -0.33 -15.51 16 17 H 0.09 3.09 7.00 -52.48 -0.37 2.73 16 18 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 19 N -0.90 -28.45 13.96 55.43 0.77 -27.68 16 20 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.12 7.90 -51.93 -0.41 0.71 16 27 H 0.04 0.42 8.12 -51.93 -0.42 -0.01 16 28 H 0.08 0.75 7.98 -51.93 -0.41 0.34 16 29 H 0.08 1.14 6.32 -51.93 -0.33 0.82 16 30 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.62 8.01 -51.93 -0.42 0.21 16 40 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.40 5.78 8.57 -40.82 -0.35 5.43 16 42 H 0.04 0.99 7.20 -51.93 -0.37 0.61 16 43 H 0.04 0.93 7.57 -51.93 -0.39 0.54 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 LS Contribution 344.20 15.07 5.19 5.19 Total: -1.00 -33.45 344.20 -8.66 -42.11 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -8.04 Total: 2.72 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.70 Total: -5.65 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -0.52 Total: -47.05 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.08 Total: -14.05 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.45 -8.66 -42.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.235 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds