Wall clock time and date at job start Mon Mar 30 2020 01:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47299 * 2 1 4 4 C 1.52998 * 109.47106 * 240.00025 * 2 1 3 5 5 N 1.46898 * 109.47359 * 184.67828 * 4 2 1 6 6 C 1.46849 * 110.99767 * 293.88414 * 5 4 2 7 7 C 1.53035 * 109.52036 * 174.15788 * 6 5 4 8 8 C 1.53123 * 109.28063 * 59.18357 * 7 6 5 9 9 C 1.52997 * 109.52601 * 182.37571 * 8 7 6 10 10 C 1.53119 * 109.15619 * 302.34347 * 8 7 6 11 11 C 1.46849 * 111.00259 * 169.67407 * 5 4 2 12 12 N 1.46505 * 109.46932 * 120.00450 * 2 1 3 13 13 C 1.34775 * 119.99620 * 279.08903 * 12 2 1 14 14 O 1.21285 * 120.00388 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99788 * 180.02562 * 13 12 2 16 16 C 1.50706 * 109.47340 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99634 * 359.97438 * 16 15 13 18 18 C 1.37877 * 120.00192 * 179.97438 * 16 15 13 19 19 N 1.31514 * 119.99857 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99813 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47323 * 89.99820 * 20 18 16 22 22 H 1.48503 * 109.46694 * 209.99796 * 20 18 16 23 23 H 1.48498 * 109.47258 * 329.99413 * 20 18 16 24 24 H 1.08995 * 109.47004 * 59.99807 * 1 2 3 25 25 H 1.08999 * 109.46816 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47030 * 299.99749 * 1 2 3 27 27 H 1.09002 * 109.47228 * 64.67600 * 4 2 1 28 28 H 1.09007 * 109.47648 * 304.67971 * 4 2 1 29 29 H 1.08998 * 109.46450 * 54.14865 * 6 5 4 30 30 H 1.08990 * 109.45623 * 294.17125 * 6 5 4 31 31 H 1.08996 * 109.50591 * 299.23743 * 7 6 5 32 32 H 1.09006 * 109.53768 * 179.13887 * 7 6 5 33 33 H 1.09000 * 109.52248 * 62.24663 * 8 7 6 34 34 H 1.09008 * 109.47083 * 59.86790 * 9 8 7 35 35 H 1.08999 * 109.47449 * 179.87308 * 9 8 7 36 36 H 1.09004 * 109.46871 * 299.87174 * 9 8 7 37 37 H 1.08997 * 109.50297 * 177.59619 * 10 8 7 38 38 H 1.09003 * 109.50318 * 297.70977 * 10 8 7 39 39 H 1.08998 * 109.45887 * 305.85606 * 11 5 4 40 40 H 1.08999 * 109.45902 * 65.83388 * 11 5 4 41 41 H 0.96992 * 120.00202 * 99.09402 * 12 2 1 42 42 H 1.08998 * 109.47005 * 299.99863 * 15 13 12 43 43 H 1.09002 * 109.47395 * 59.99387 * 15 13 12 44 44 H 0.96994 * 119.99572 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5047 -0.8199 -1.1941 6 6 4.1251 0.5082 -1.2815 7 6 5.6362 0.3812 -1.0752 8 6 6.2167 -0.5453 -2.1472 9 6 7.7178 -0.7235 -1.9108 10 6 5.5196 -1.9062 -2.0662 11 6 4.0119 -1.7130 -2.2437 12 7 2.0183 -0.6907 1.1962 13 6 2.0691 -0.0410 2.3759 14 8 1.7101 1.1153 2.4474 15 6 2.5719 -0.7513 3.6062 16 6 2.5270 0.1892 4.7829 17 1 2.1704 1.2003 4.6527 18 6 2.9411 -0.2411 6.0256 19 7 2.9024 0.5798 7.0523 20 14 3.5585 -1.9898 6.2506 21 1 5.0253 -2.0301 6.0224 22 1 3.2596 -2.4463 7.6317 23 1 2.8813 -2.8830 5.2766 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7467 -0.1613 -2.1373 28 1 1.6099 -1.7219 -1.2922 29 1 3.7067 1.1560 -0.5112 30 1 3.9274 0.9374 -2.2636 31 1 5.8350 -0.0352 -0.0878 32 1 6.0990 1.3649 -1.1552 33 1 6.0523 -0.1099 -3.1329 34 1 7.8812 -1.1588 -0.9249 35 1 8.1297 -1.3849 -2.6730 36 1 8.2119 0.2466 -1.9661 37 1 5.8984 -2.5566 -2.8545 38 1 5.7166 -2.3587 -1.0943 39 1 3.5110 -2.6784 -2.1722 40 1 3.8148 -1.2731 -3.2213 41 1 2.3052 -1.6155 1.1391 42 1 1.9413 -1.6169 3.8092 43 1 3.5982 -1.0800 3.4421 44 1 3.1941 0.2771 7.9265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143203507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:02 Heat of formation + Delta-G solvation = -80.610025 kcal Electronic energy + Delta-G solvation = -21395.944381 eV Core-core repulsion = 18346.152372 eV Total energy + Delta-G solvation = -3049.792009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80464 -39.85359 -37.06729 -34.98787 -34.74488 -32.51243 -31.74564 -30.89472 -29.20649 -26.15468 -25.31288 -24.21727 -22.86868 -21.70356 -21.11743 -20.51236 -19.00464 -17.62425 -17.17597 -16.93008 -16.22478 -15.86610 -15.67338 -15.50295 -15.29451 -14.96336 -14.78882 -14.30984 -14.11847 -14.00817 -13.64730 -13.28648 -13.23817 -13.06940 -12.76633 -12.70339 -12.60550 -12.49774 -12.35580 -12.09621 -11.84069 -11.82769 -11.51871 -11.50404 -11.13367 -11.03913 -10.77263 -10.46661 -9.84249 -9.21354 -8.24667 -6.32202 1.39629 1.43669 1.54410 1.98789 2.39414 2.49945 2.95053 3.08914 3.74403 3.87563 3.89764 3.97338 4.19785 4.29643 4.35537 4.42555 4.47540 4.51945 4.59687 4.66397 4.72783 4.75827 4.78721 4.80786 4.81839 4.88988 4.96666 5.03852 5.10473 5.12977 5.17572 5.25434 5.29397 5.32485 5.35658 5.52149 5.57443 5.77137 6.15056 6.23692 6.29146 6.76020 6.97380 7.28653 7.65130 8.93180 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.005197 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.548016 B = 5386.747327 C = 6341.860947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.050 0.950 4 C 0.060 3.940 5 N -0.546 5.546 6 C 0.058 3.942 7 C -0.112 4.112 8 C -0.089 4.089 9 C -0.144 4.144 10 C -0.109 4.109 11 C 0.058 3.942 12 N -0.702 5.702 13 C 0.521 3.479 14 O -0.592 6.592 15 C -0.027 4.027 16 C -0.530 4.530 17 H 0.027 0.973 18 C 0.001 3.999 19 N -0.955 5.955 20 Si 0.961 3.039 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.231 1.231 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.038 0.962 41 H 0.412 0.588 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 -10.505 -25.218 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.068 0.932 4 C -0.068 4.068 5 N -0.271 5.271 6 C -0.070 4.070 7 C -0.150 4.150 8 C -0.107 4.107 9 C -0.202 4.202 10 C -0.147 4.147 11 C -0.069 4.069 12 N -0.355 5.355 13 C 0.309 3.691 14 O -0.472 6.472 15 C -0.067 4.067 16 C -0.568 4.568 17 H 0.045 0.955 18 C -0.195 4.195 19 N -0.596 5.596 20 Si 0.782 3.218 21 H -0.188 1.188 22 H -0.210 1.210 23 H -0.154 1.154 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.121 0.879 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.056 0.944 41 H 0.248 0.752 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.384 -9.874 -24.575 26.845 hybrid contribution 0.059 0.262 0.211 0.341 sum 4.443 -9.612 -24.365 26.566 Atomic orbital electron populations 1.22086 0.94630 1.02971 1.01804 1.20951 0.94068 0.96229 0.84892 0.93174 1.22340 0.87568 1.02001 0.94935 1.61817 1.05150 1.11381 1.48757 1.22006 0.95310 0.90313 0.99328 1.21622 0.94113 0.99801 0.99419 1.21149 0.95422 0.95877 0.98257 1.21793 0.94904 1.01765 1.01717 1.21640 0.93940 0.96614 1.02494 1.22138 0.95991 0.96966 0.91816 1.45780 1.66330 1.16447 1.06959 1.21038 0.76160 0.86400 0.85469 1.90552 1.50295 1.20027 1.86311 1.19558 0.98855 0.97129 0.91113 1.21182 1.43332 0.98912 0.93373 0.95474 1.26133 0.95210 1.03324 0.94860 1.70098 1.49535 1.38649 1.01275 0.85537 0.79524 0.78447 0.78311 1.18832 1.21036 1.15365 0.89859 0.90599 0.95315 0.92163 0.87896 0.93329 0.94240 0.93037 0.91769 0.91061 0.93367 0.91519 0.92819 0.89892 0.92166 0.89354 0.94382 0.75192 0.91639 0.92045 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.41 71.98 0.68 -3.23 16 2 C 0.14 3.91 2.32 44.99 0.10 4.01 16 3 H 0.05 1.69 6.23 -2.39 -0.01 1.67 16 4 C 0.06 1.09 4.49 86.30 0.39 1.48 16 5 N -0.55 -10.96 4.39 -896.38 -3.93 -14.89 16 6 C 0.06 1.34 5.29 86.32 0.46 1.79 16 7 C -0.11 -2.44 5.38 30.65 0.16 -2.27 16 8 C -0.09 -1.46 2.79 -10.71 -0.03 -1.49 16 9 C -0.14 -2.21 9.20 71.98 0.66 -1.54 16 10 C -0.11 -1.63 5.38 30.65 0.16 -1.47 16 11 C 0.06 0.86 5.46 86.32 0.47 1.33 16 12 N -0.70 -22.60 4.85 -442.52 -2.15 -24.75 16 13 C 0.52 23.71 7.73 87.66 0.68 24.39 16 14 O -0.59 -32.97 14.94 -3.04 -0.05 -33.01 16 15 C -0.03 -1.28 4.53 29.10 0.13 -1.15 16 16 C -0.53 -32.97 9.48 25.60 0.24 -32.73 16 17 H 0.03 1.98 7.00 -2.91 -0.02 1.96 16 18 C 0.00 0.04 5.47 84.65 0.46 0.51 16 19 N -0.96 -62.70 13.96 21.45 0.30 -62.40 16 20 Si 0.96 43.53 27.47 68.60 1.88 45.42 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.23 -9.10 6.54 99.48 0.65 -8.45 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.03 0.94 7.90 -2.39 -0.02 0.92 16 27 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 28 H 0.10 1.45 7.98 -2.38 -0.02 1.44 16 29 H 0.05 1.42 6.32 -2.39 -0.02 1.41 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 1.08 8.01 -2.39 -0.02 1.06 16 40 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.41 10.84 8.57 -92.71 -0.79 10.05 16 42 H 0.07 2.86 7.20 -2.39 -0.02 2.84 16 43 H 0.06 2.70 7.57 -2.39 -0.02 2.68 16 44 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -79.00 344.20 0.74 -78.26 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.10 Total: 21.75 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.58 Total: -10.37 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -5.78 Total: -102.05 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.05 Total: -33.01 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.42 kcal Total: -79.00 0.74 -78.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.349 kcal (2) G-P(sol) polarization free energy of solvation -79.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds