Wall clock time and date at job start Mon Mar 30 2020 01:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 N 1.46896 * 109.47093 * 175.00278 * 4 2 1 6 6 C 1.46845 * 111.00039 * 45.79081 * 5 4 2 7 7 C 1.53043 * 109.52446 * 185.83704 * 6 5 4 8 8 C 1.53112 * 109.27853 * 300.82283 * 7 6 5 9 9 C 1.53008 * 109.57354 * 177.58941 * 8 7 6 10 10 C 1.53127 * 109.16185 * 57.65659 * 8 7 6 11 11 C 1.46847 * 111.00219 * 170.00327 * 5 4 2 12 12 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 13 13 C 1.34777 * 120.00258 * 85.00009 * 12 2 1 14 14 O 1.21279 * 120.00166 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99762 * 179.97438 * 13 12 2 16 16 C 1.50699 * 109.46817 * 179.97438 * 15 13 12 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 13 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 13 19 19 N 1.31522 * 119.99835 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00390 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46946 * 59.99892 * 20 18 16 22 22 H 1.48496 * 109.46933 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46921 * 299.99575 * 20 18 16 24 24 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 26 26 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 27 27 H 1.08994 * 109.47323 * 295.00629 * 4 2 1 28 28 H 1.09001 * 109.46928 * 55.00843 * 4 2 1 29 29 H 1.08997 * 109.46192 * 305.85558 * 6 5 4 30 30 H 1.09005 * 109.46051 * 65.82890 * 6 5 4 31 31 H 1.09000 * 109.50192 * 180.87938 * 7 6 5 32 32 H 1.08997 * 109.50159 * 60.76528 * 7 6 5 33 33 H 1.08998 * 109.52960 * 297.74628 * 8 7 6 34 34 H 1.09002 * 109.47160 * 300.28624 * 9 8 7 35 35 H 1.08993 * 109.46969 * 60.28835 * 9 8 7 36 36 H 1.09000 * 109.46649 * 180.28654 * 9 8 7 37 37 H 1.08998 * 109.49880 * 182.40288 * 10 8 7 38 38 H 1.08994 * 109.50315 * 62.28233 * 10 8 7 39 39 H 1.09003 * 109.46222 * 294.17980 * 11 5 4 40 40 H 1.08999 * 109.46277 * 54.15205 * 11 5 4 41 41 H 0.96999 * 119.99694 * 264.99399 * 12 2 1 42 42 H 1.09000 * 109.47318 * 299.99141 * 15 13 12 43 43 H 1.09000 * 109.47161 * 59.99772 * 15 13 12 44 44 H 0.96992 * 120.00038 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5040 -0.8265 1.1904 6 6 4.1080 0.4515 0.7926 7 6 5.6151 0.2672 0.6008 8 6 6.2350 -0.2257 1.9113 9 6 7.7320 -0.4697 1.7103 10 6 5.5550 -1.5327 2.3285 11 6 4.0497 -1.2961 2.4703 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8582 1.1584 -2.4118 15 6 2.6500 -0.7286 -3.5874 16 6 2.7000 0.2396 -4.7412 17 1 2.3974 1.2664 -4.5980 18 6 3.1309 -0.1857 -5.9799 19 7 3.4989 -1.4363 -6.1544 20 14 3.1936 1.0145 -7.4100 21 1 4.1099 2.1344 -7.0764 22 1 3.6890 0.3145 -8.6223 23 1 1.8322 1.5487 -7.6678 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.7516 -0.1582 2.1369 28 1 1.6055 -1.7197 1.2951 29 1 3.6614 0.7887 -0.1427 30 1 3.9291 1.1951 1.5693 31 1 6.0655 1.2195 0.3208 32 1 5.7949 -0.4661 -0.1852 33 1 6.0894 0.5248 2.6882 34 1 7.8768 -1.2187 0.9318 35 1 8.2152 0.4611 1.4134 36 1 8.1705 -0.8253 2.6427 37 1 5.9625 -1.8663 3.2829 38 1 5.7338 -2.2943 1.5696 39 1 3.8710 -0.5444 3.2391 40 1 3.5608 -2.2283 2.7534 41 1 2.2491 -1.6317 -1.1525 42 1 3.6494 -1.1203 -3.3979 43 1 1.9778 -1.5509 -3.8325 44 1 3.8018 -1.7356 -7.0259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203508.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:06 Heat of formation + Delta-G solvation = -58.197651 kcal Electronic energy + Delta-G solvation = -21486.922278 eV Core-core repulsion = 18438.102142 eV Total energy + Delta-G solvation = -3048.820136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.68088 -38.37014 -35.83814 -33.54873 -32.83914 -30.86124 -30.72112 -28.56674 -28.18236 -25.07544 -23.74260 -23.23861 -21.99780 -20.38756 -19.78192 -19.33791 -16.35025 -16.27294 -15.70882 -15.55267 -14.76438 -14.60652 -14.50519 -14.25403 -14.00359 -13.90958 -13.15014 -13.05032 -12.72259 -12.43160 -12.38318 -12.00692 -11.99063 -11.83567 -11.76583 -11.42268 -11.18981 -11.07141 -10.82535 -10.73632 -10.64267 -10.51057 -10.29715 -10.02860 -9.88684 -9.20700 -8.54105 -8.38856 -8.28945 -8.25635 -5.98994 -3.97985 3.41042 3.43005 3.48474 3.77158 3.87215 4.10933 4.54712 4.66276 4.76087 4.78154 4.87078 5.22865 5.24642 5.31006 5.38938 5.40203 5.45218 5.50814 5.55159 5.60768 5.63788 5.70351 5.75315 5.81615 5.84319 5.94755 6.01912 6.10284 6.13898 6.18804 6.26131 6.40735 6.46270 6.55172 7.06026 7.13883 7.23982 7.33526 7.43936 8.02675 8.19205 8.58895 9.12546 9.37597 9.66799 11.13396 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.004990 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.021135 B = 5609.958413 C = 6637.014416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.082 0.918 4 C 0.049 3.951 5 N -0.530 5.530 6 C 0.050 3.950 7 C -0.111 4.111 8 C -0.093 4.093 9 C -0.146 4.146 10 C -0.110 4.110 11 C 0.057 3.943 12 N -0.731 5.731 13 C 0.516 3.484 14 O -0.553 6.553 15 C 0.006 3.994 16 C -0.505 4.505 17 H 0.073 0.927 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.025 0.975 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.399 0.601 42 H 0.047 0.953 43 H 0.045 0.955 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -1.671 19.488 19.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.033 3.967 3 H 0.100 0.900 4 C -0.079 4.079 5 N -0.255 5.255 6 C -0.078 4.078 7 C -0.149 4.149 8 C -0.112 4.112 9 C -0.203 4.203 10 C -0.148 4.148 11 C -0.071 4.071 12 N -0.384 5.384 13 C 0.306 3.694 14 O -0.430 6.430 15 C -0.033 4.033 16 C -0.544 4.544 17 H 0.091 0.909 18 C -0.146 4.146 19 N -0.541 5.541 20 Si 0.728 3.272 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.202 1.202 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.233 0.767 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.258 -1.271 18.943 19.120 hybrid contribution -0.074 0.648 -0.079 0.657 sum 2.184 -0.623 18.864 19.001 Atomic orbital electron populations 1.22149 0.95715 1.01911 1.02211 1.20859 0.93492 0.97522 0.84862 0.89967 1.22439 0.87936 1.00912 0.96621 1.61916 1.04294 1.29545 1.29733 1.22230 0.95292 0.89259 1.01005 1.21635 0.94177 1.01654 0.97436 1.21187 0.95061 0.97199 0.97762 1.21808 0.95343 1.01739 1.01423 1.21635 0.93952 0.97903 1.01327 1.22072 0.95725 0.99555 0.89778 1.46205 1.69118 1.14107 1.09015 1.21943 0.75363 0.87520 0.84584 1.90519 1.50260 1.17075 1.85135 1.19200 0.97796 0.97027 0.89282 1.21133 1.43131 0.97123 0.93014 0.90863 1.24998 0.95419 0.95310 0.98878 1.69957 1.45000 1.15348 1.23818 0.86518 0.78524 0.80982 0.81173 1.20200 1.21418 1.20201 0.92582 0.92581 0.91583 0.94140 0.90259 0.89139 0.95654 0.91700 0.90631 0.92007 0.92387 0.92789 0.93066 0.91961 0.90849 0.95400 0.90984 0.76689 0.93518 0.93725 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 2 C 0.14 2.01 1.88 -67.94 -0.13 1.89 16 3 H 0.08 1.37 5.98 -51.93 -0.31 1.06 16 4 C 0.05 0.57 4.83 -3.83 -0.02 0.55 16 5 N -0.53 -6.51 4.54 -234.68 -1.07 -7.58 16 6 C 0.05 0.67 4.80 -3.83 -0.02 0.66 16 7 C -0.11 -1.41 5.38 -26.65 -0.14 -1.56 16 8 C -0.09 -0.97 2.79 -90.49 -0.25 -1.22 16 9 C -0.15 -1.37 9.21 37.16 0.34 -1.03 16 10 C -0.11 -1.08 5.38 -26.65 -0.14 -1.23 16 11 C 0.06 0.58 5.42 -3.83 -0.02 0.56 16 12 N -0.73 -12.57 4.27 -53.81 -0.23 -12.80 16 13 C 0.52 11.71 7.54 -10.98 -0.08 11.62 16 14 O -0.55 -14.30 15.12 5.56 0.08 -14.21 16 15 C 0.01 0.16 5.46 -29.03 -0.16 0.00 16 16 C -0.51 -14.84 8.92 -34.44 -0.31 -15.15 16 17 H 0.07 2.24 6.75 -52.48 -0.35 1.89 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 20 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 1.51 5.30 -51.93 -0.28 1.23 16 30 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 41 H 0.40 6.26 8.60 -40.82 -0.35 5.91 16 42 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 346.05 15.07 5.21 5.21 Total: -1.00 -31.58 346.05 -8.99 -40.56 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.03 Total: 2.66 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.68 Total: -5.23 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.56 Total: -46.41 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.08 Total: -14.21 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.58 -8.99 -40.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203508.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.633 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds