Wall clock time and date at job start Mon Mar 30 2020 00:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99929 * 2 1 4 4 C 1.50699 * 109.46963 * 270.00030 * 3 2 1 5 5 O 1.21284 * 120.00250 * 359.97438 * 4 3 2 6 6 N 1.34780 * 120.00060 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00084 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.41332 * 35.13832 * 7 6 4 9 9 C 1.52952 * 109.41604 * 154.99794 * 7 6 4 10 10 C 1.53225 * 109.40874 * 183.70429 * 9 7 6 11 11 C 1.51273 * 108.53456 * 305.37285 * 10 9 7 12 12 C 1.37878 * 120.84732 * 231.32105 * 11 10 9 13 13 N 1.31515 * 120.00313 * 0.02562 * 12 11 10 14 14 Si 1.86799 * 119.99879 * 179.97438 * 12 11 10 15 15 H 1.48497 * 109.47073 * 60.00085 * 14 12 11 16 16 H 1.48501 * 109.47437 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47250 * 300.00576 * 14 12 11 18 18 C 1.51266 * 118.30250 * 51.34710 * 11 10 9 19 19 C 1.52958 * 109.41368 * 275.35289 * 7 6 4 20 20 C 1.37481 * 119.99734 * 179.97438 * 2 1 3 21 21 N 1.30344 * 120.00310 * 0.02562 * 20 2 1 22 22 N 1.37490 * 119.99659 * 179.72490 * 20 2 1 23 23 H 1.09000 * 109.47191 * 270.00309 * 1 2 3 24 24 H 1.09000 * 109.47064 * 30.00014 * 1 2 3 25 25 H 1.08993 * 109.47164 * 150.00383 * 1 2 3 26 26 H 1.09003 * 109.47220 * 29.99934 * 3 2 1 27 27 H 1.08997 * 109.47175 * 150.00250 * 3 2 1 28 28 H 0.96994 * 119.99778 * 359.97438 * 6 4 3 29 29 H 1.09001 * 109.48042 * 303.68794 * 9 7 6 30 30 H 1.09000 * 109.48151 * 63.72155 * 9 7 6 31 31 H 1.09000 * 109.62530 * 65.08288 * 10 9 7 32 32 H 1.08996 * 109.63144 * 185.46641 * 10 9 7 33 33 H 0.96996 * 120.00024 * 179.97438 * 13 12 11 34 34 H 1.09007 * 109.62791 * 68.36359 * 18 11 10 35 35 H 1.09002 * 109.63008 * 188.93750 * 18 11 10 36 36 H 1.09010 * 109.48146 * 296.27557 * 19 7 6 37 37 H 1.08997 * 109.48386 * 56.31243 * 19 7 6 38 38 H 0.96999 * 120.00059 * 179.72453 * 21 20 2 39 39 H 0.96999 * 119.99969 * 180.27545 * 22 20 2 40 40 H 0.97000 * 119.99811 * 0.27483 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 8 2.0550 1.0209 -2.3427 6 7 3.1116 2.8510 -1.6671 7 6 3.3563 3.2736 -3.0484 8 1 2.5080 2.9878 -3.6703 9 6 3.5298 4.7926 -3.0922 10 6 3.6934 5.2447 -4.5471 11 6 4.8348 4.4688 -5.1663 12 6 5.8568 5.1194 -5.8246 13 7 5.8477 6.4310 -5.9200 14 14 7.2551 4.1377 -6.5799 15 1 6.7107 3.2030 -7.5973 16 1 8.2192 5.0651 -7.2247 17 1 7.9474 3.3646 -5.5177 18 6 4.8261 2.9610 -5.0452 19 6 4.6214 2.5918 -3.5722 20 6 2.1524 -1.1907 0.0005 21 7 1.5007 -2.3195 0.0005 22 7 3.5273 -1.1906 -0.0052 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5137 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 3.4268 3.3969 -0.9299 29 1 2.6515 5.2715 -2.6592 30 1 4.4154 5.0739 -2.5223 31 1 2.7741 5.0456 -5.0978 32 1 3.9138 6.3117 -4.5764 33 1 6.5668 6.8886 -6.3829 34 1 4.0116 2.5505 -5.6421 35 1 5.7777 2.5601 -5.3943 36 1 5.4812 2.9252 -2.9910 37 1 4.5167 1.5109 -3.4795 38 1 1.9857 -3.1595 -0.0031 39 1 4.0123 -2.0307 -0.0088 40 1 4.0123 -0.3506 -0.0056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144143220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:49 Heat of formation + Delta-G solvation = -11.178937 kcal Electronic energy + Delta-G solvation = -20993.516756 eV Core-core repulsion = 17843.195161 eV Total energy + Delta-G solvation = -3150.321595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.94798 -38.31144 -36.68948 -34.22910 -33.75370 -31.80511 -31.24008 -29.73717 -28.65706 -27.01396 -25.66766 -22.41248 -21.56444 -20.52168 -19.80221 -19.38072 -17.82203 -17.35373 -17.10662 -16.00885 -15.60581 -15.17880 -14.52923 -14.45891 -14.34959 -14.07683 -13.33373 -13.13505 -12.84380 -12.44751 -12.36013 -12.14236 -12.09886 -11.93031 -11.64144 -11.07292 -10.83903 -10.73988 -10.27130 -10.08621 -9.86637 -9.74317 -9.39544 -9.09671 -8.97651 -8.86249 -8.52352 -8.39526 -7.93033 -6.15159 -4.06043 2.60016 2.79373 3.08549 3.25734 3.32858 3.34841 3.51566 3.97785 4.34976 4.70960 4.88224 4.97044 5.13177 5.32834 5.61909 5.66998 5.73809 5.82184 5.97999 6.13442 6.40538 6.41229 6.56790 6.64681 6.70504 6.73370 6.82536 6.90448 7.00726 7.08692 7.18612 7.37483 7.58839 7.66098 7.71248 7.86016 7.95033 8.32967 8.48386 8.78008 8.90801 9.49930 10.94518 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033011 B = 0.004296 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.999434 B = 6516.779363 C = 7029.548001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.593 5.593 3 C 0.103 3.897 4 C 0.478 3.522 5 O -0.525 6.525 6 N -0.724 5.724 7 C 0.155 3.845 8 H 0.077 0.923 9 C -0.114 4.114 10 C 0.013 3.987 11 C -0.490 4.490 12 C 0.077 3.923 13 N -0.890 5.890 14 Si 0.891 3.109 15 H -0.274 1.274 16 H -0.292 1.292 17 H -0.275 1.275 18 C -0.009 4.009 19 C -0.112 4.112 20 C 0.648 3.352 21 N -0.832 5.832 22 N -0.899 5.899 23 H 0.046 0.954 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.394 0.606 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.006 0.994 32 H 0.061 0.939 33 H 0.265 0.735 34 H 0.020 0.980 35 H 0.025 0.975 36 H 0.050 0.950 37 H 0.035 0.965 38 H 0.335 0.665 39 H 0.405 0.595 40 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.070 -7.675 14.524 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.316 5.316 3 C -0.026 4.026 4 C 0.261 3.739 5 O -0.400 6.400 6 N -0.375 5.375 7 C 0.052 3.948 8 H 0.095 0.905 9 C -0.152 4.152 10 C -0.025 4.025 11 C -0.509 4.509 12 C -0.125 4.125 13 N -0.528 5.528 14 Si 0.719 3.281 15 H -0.200 1.200 16 H -0.218 1.218 17 H -0.201 1.201 18 C -0.047 4.047 19 C -0.151 4.151 20 C 0.281 3.719 21 N -0.482 5.482 22 N -0.456 5.456 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.128 0.872 27 H 0.115 0.885 28 H 0.227 0.773 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.024 0.976 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.151 0.849 39 H 0.235 0.765 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.427 -8.090 13.780 16.876 hybrid contribution 2.584 -0.354 -0.137 2.612 sum -2.843 -8.444 13.643 16.295 Atomic orbital electron populations 1.21447 0.76928 1.03266 1.00678 1.45110 1.05933 1.00494 1.80106 1.21339 0.99010 0.87390 0.94849 1.21323 0.78839 0.81770 0.91994 1.90745 1.50281 1.53181 1.45772 1.46453 1.57387 1.23435 1.10248 1.21036 0.98399 0.95537 0.79824 0.90494 1.21924 0.99008 0.92176 1.02094 1.19330 0.95144 0.99054 0.88949 1.20023 1.06876 0.89588 1.34443 1.24826 0.97543 0.94751 0.95428 1.69815 1.33310 1.07322 1.42324 0.86657 0.82003 0.79683 0.79731 1.19977 1.21823 1.20065 1.19591 0.96603 0.96843 0.91650 1.21883 0.96304 0.97110 0.99785 1.18628 0.79013 0.87748 0.86502 1.69712 1.38058 0.97929 1.42467 1.43479 1.04891 1.11433 1.85802 0.93536 0.92117 0.89867 0.87201 0.88527 0.77348 0.94578 0.92700 0.97584 0.92078 0.92481 0.96178 0.95667 0.93073 0.94644 0.84907 0.76475 0.78473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.34 10.44 59.85 0.63 1.96 16 2 N -0.59 -7.08 2.44 -184.72 -0.45 -7.53 16 3 C 0.10 0.99 5.70 -5.20 -0.03 0.96 16 4 C 0.48 6.75 7.86 -10.98 -0.09 6.67 16 5 O -0.52 -10.07 16.09 5.55 0.09 -9.99 16 6 N -0.72 -10.01 5.07 -53.85 -0.27 -10.28 16 7 C 0.15 2.87 2.35 -67.98 -0.16 2.71 16 8 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 9 C -0.11 -2.19 5.40 -26.64 -0.14 -2.33 16 10 C 0.01 0.31 5.96 -27.49 -0.16 0.15 16 11 C -0.49 -12.64 5.51 -98.92 -0.55 -13.18 16 12 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 13 N -0.89 -25.04 12.74 55.43 0.71 -24.34 16 14 Si 0.89 21.09 26.80 -169.99 -4.56 16.53 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 C -0.01 -0.20 5.59 -27.49 -0.15 -0.36 16 19 C -0.11 -2.27 5.50 -26.63 -0.15 -2.41 16 20 C 0.65 8.35 8.66 -320.08 -2.77 5.58 16 21 N -0.83 -11.74 12.83 30.15 0.39 -11.36 16 22 N -0.90 -8.86 8.88 30.14 0.27 -8.59 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 25 H 0.08 1.08 7.36 -51.93 -0.38 0.70 16 26 H 0.11 0.74 8.07 -51.93 -0.42 0.32 16 27 H 0.10 0.68 6.43 -51.93 -0.33 0.35 16 28 H 0.39 4.10 8.60 -40.82 -0.35 3.75 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.06 1.59 7.08 -51.93 -0.37 1.22 16 33 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.02 0.58 5.17 -51.93 -0.27 0.31 16 36 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.33 4.22 8.80 -40.82 -0.36 3.86 16 39 H 0.40 3.27 8.83 -40.82 -0.36 2.91 16 40 H 0.39 3.41 6.71 -40.82 -0.27 3.13 16 LS Contribution 322.62 15.07 4.86 4.86 Total: -1.00 -32.56 322.62 -8.66 -41.22 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.02 Total: 7.76 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -3.67 Total: 1.71 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.64 Total: -62.10 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.56 Total: 16.53 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.56 -8.66 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144143220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.041 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds