Wall clock time and date at job start Mon Mar 30 2020 00:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99929 * 2 1 4 4 C 1.50699 * 109.46963 * 270.00030 * 3 2 1 5 5 O 1.21284 * 120.00250 * 359.97438 * 4 3 2 6 6 N 1.34780 * 120.00060 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00084 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.41332 * 35.13832 * 7 6 4 9 9 C 1.52952 * 109.41604 * 154.99794 * 7 6 4 10 10 C 1.53225 * 109.40874 * 183.70429 * 9 7 6 11 11 C 1.51273 * 108.53456 * 305.37285 * 10 9 7 12 12 C 1.37878 * 120.84732 * 231.32105 * 11 10 9 13 13 N 1.31515 * 120.00313 * 0.02562 * 12 11 10 14 14 Si 1.86799 * 119.99879 * 179.97438 * 12 11 10 15 15 H 1.48497 * 109.47073 * 60.00085 * 14 12 11 16 16 H 1.48501 * 109.47437 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47250 * 300.00576 * 14 12 11 18 18 C 1.51266 * 118.30250 * 51.34710 * 11 10 9 19 19 C 1.52958 * 109.41368 * 275.35289 * 7 6 4 20 20 C 1.37481 * 119.99734 * 179.97438 * 2 1 3 21 21 N 1.30344 * 120.00310 * 0.02562 * 20 2 1 22 22 N 1.37490 * 119.99659 * 179.72490 * 20 2 1 23 23 H 1.09000 * 109.47191 * 270.00309 * 1 2 3 24 24 H 1.09000 * 109.47064 * 30.00014 * 1 2 3 25 25 H 1.08993 * 109.47164 * 150.00383 * 1 2 3 26 26 H 1.09003 * 109.47220 * 29.99934 * 3 2 1 27 27 H 1.08997 * 109.47175 * 150.00250 * 3 2 1 28 28 H 0.96994 * 119.99778 * 359.97438 * 6 4 3 29 29 H 1.09001 * 109.48042 * 303.68794 * 9 7 6 30 30 H 1.09000 * 109.48151 * 63.72155 * 9 7 6 31 31 H 1.09000 * 109.62530 * 65.08288 * 10 9 7 32 32 H 1.08996 * 109.63144 * 185.46641 * 10 9 7 33 33 H 0.96996 * 120.00024 * 179.97438 * 13 12 11 34 34 H 1.09007 * 109.62791 * 68.36359 * 18 11 10 35 35 H 1.09002 * 109.63008 * 188.93750 * 18 11 10 36 36 H 1.09010 * 109.48146 * 296.27557 * 19 7 6 37 37 H 1.08997 * 109.48386 * 56.31243 * 19 7 6 38 38 H 0.96999 * 120.00059 * 179.72453 * 21 20 2 39 39 H 0.96999 * 119.99969 * 180.27545 * 22 20 2 40 40 H 0.97000 * 119.99811 * 0.27483 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 8 2.0550 1.0209 -2.3427 6 7 3.1116 2.8510 -1.6671 7 6 3.3563 3.2736 -3.0484 8 1 2.5080 2.9878 -3.6703 9 6 3.5298 4.7926 -3.0922 10 6 3.6934 5.2447 -4.5471 11 6 4.8348 4.4688 -5.1663 12 6 5.8568 5.1194 -5.8246 13 7 5.8477 6.4310 -5.9200 14 14 7.2551 4.1377 -6.5799 15 1 6.7107 3.2030 -7.5973 16 1 8.2192 5.0651 -7.2247 17 1 7.9474 3.3646 -5.5177 18 6 4.8261 2.9610 -5.0452 19 6 4.6214 2.5918 -3.5722 20 6 2.1524 -1.1907 0.0005 21 7 1.5007 -2.3195 0.0005 22 7 3.5273 -1.1906 -0.0052 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5137 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 3.4268 3.3969 -0.9299 29 1 2.6515 5.2715 -2.6592 30 1 4.4154 5.0739 -2.5223 31 1 2.7741 5.0456 -5.0978 32 1 3.9138 6.3117 -4.5764 33 1 6.5668 6.8886 -6.3829 34 1 4.0116 2.5505 -5.6421 35 1 5.7777 2.5601 -5.3943 36 1 5.4812 2.9252 -2.9910 37 1 4.5167 1.5109 -3.4795 38 1 1.9857 -3.1595 -0.0031 39 1 4.0123 -2.0307 -0.0088 40 1 4.0123 -0.3506 -0.0056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144143220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:48 Heat of formation + Delta-G solvation = -33.844231 kcal Electronic energy + Delta-G solvation = -20994.499597 eV Core-core repulsion = 17843.195161 eV Total energy + Delta-G solvation = -3151.304436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08416 -39.40111 -38.20780 -35.35653 -35.09737 -33.46529 -32.25228 -31.48775 -29.89302 -28.38334 -26.64866 -24.09304 -23.31426 -21.74878 -21.27877 -20.52155 -18.69131 -18.50717 -18.10583 -17.70333 -16.91297 -16.44832 -16.13196 -15.55403 -15.47174 -15.07049 -14.96675 -14.55306 -14.29299 -14.13298 -13.90221 -13.45466 -13.19471 -13.02168 -12.83310 -12.77128 -12.62959 -12.53545 -12.00951 -11.81541 -11.60729 -11.13028 -10.83087 -10.67343 -10.55832 -10.35400 -9.86246 -9.78377 -8.88144 -8.19078 -6.12814 1.37082 1.40024 1.47003 1.70656 1.71790 2.16194 2.39067 2.44075 3.09369 3.18908 3.86527 4.02196 4.10091 4.22435 4.33191 4.50201 4.50687 4.70944 4.84396 4.86205 4.86615 4.95901 5.07305 5.11578 5.16299 5.20127 5.26274 5.53819 5.59270 5.70465 5.74680 5.78411 5.83215 5.96276 6.24924 6.33882 6.74195 6.92767 7.13487 7.41544 7.45601 7.87074 8.91587 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033011 B = 0.004296 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.999434 B = 6516.779363 C = 7029.548001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.599 5.599 3 C 0.110 3.890 4 C 0.479 3.521 5 O -0.579 6.579 6 N -0.709 5.709 7 C 0.168 3.832 8 H 0.048 0.952 9 C -0.099 4.099 10 C 0.007 3.993 11 C -0.500 4.500 12 C 0.028 3.972 13 N -0.927 5.927 14 Si 0.938 3.062 15 H -0.275 1.275 16 H -0.291 1.291 17 H -0.263 1.263 18 C -0.013 4.013 19 C -0.103 4.103 20 C 0.638 3.362 21 N -0.862 5.862 22 N -0.888 5.888 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.150 0.850 27 H 0.131 0.869 28 H 0.416 0.584 29 H 0.061 0.939 30 H 0.061 0.939 31 H -0.007 1.007 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.008 0.992 35 H 0.025 0.975 36 H 0.060 0.940 37 H 0.037 0.963 38 H 0.338 0.662 39 H 0.413 0.587 40 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 -8.137 16.941 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.322 5.322 3 C -0.018 4.018 4 C 0.264 3.736 5 O -0.458 6.458 6 N -0.362 5.362 7 C 0.063 3.937 8 H 0.067 0.933 9 C -0.138 4.138 10 C -0.031 4.031 11 C -0.519 4.519 12 C -0.170 4.170 13 N -0.566 5.566 14 Si 0.765 3.235 15 H -0.201 1.201 16 H -0.218 1.218 17 H -0.188 1.188 18 C -0.051 4.051 19 C -0.142 4.142 20 C 0.270 3.730 21 N -0.513 5.513 22 N -0.446 5.446 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.167 0.833 27 H 0.148 0.852 28 H 0.252 0.748 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.012 0.988 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.027 0.973 35 H 0.043 0.957 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.154 0.846 39 H 0.244 0.756 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.909 -8.541 16.248 19.001 hybrid contribution 2.362 -0.208 -0.923 2.545 sum -2.546 -8.748 15.325 17.829 Atomic orbital electron populations 1.21458 0.76929 1.02294 1.01695 1.45349 1.06297 1.00956 1.79594 1.21571 1.01268 0.87263 0.91696 1.22195 0.77206 0.80685 0.93496 1.90741 1.52337 1.54741 1.47948 1.46107 1.57323 1.23920 1.08825 1.20531 0.96407 0.94626 0.82143 0.93334 1.21678 1.00492 0.92864 0.98728 1.19305 0.94085 0.97476 0.92222 1.20569 1.06863 0.90986 1.33495 1.25503 0.99915 0.95437 0.96185 1.69931 1.34181 1.08645 1.43889 0.85884 0.79791 0.78562 0.79276 1.20071 1.21768 1.18776 1.19611 0.96187 0.95307 0.93998 1.21740 0.97535 0.97345 0.97557 1.18846 0.80076 0.87905 0.86127 1.69706 1.39090 0.98633 1.43902 1.43357 1.03923 1.12330 1.85033 0.91438 0.91532 0.92435 0.83265 0.85165 0.74752 0.92030 0.92025 0.98837 0.94738 0.92664 0.97342 0.95650 0.92169 0.94467 0.84628 0.75561 0.77590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.43 10.44 127.77 1.33 3.77 16 2 N -0.60 -12.67 2.44 -738.31 -1.80 -14.47 16 3 C 0.11 1.63 5.70 85.63 0.49 2.12 16 4 C 0.48 12.08 7.86 87.66 0.69 12.77 16 5 O -0.58 -21.44 16.09 -3.04 -0.05 -21.49 16 6 N -0.71 -17.16 5.07 -442.67 -2.25 -19.41 16 7 C 0.17 5.90 2.35 44.96 0.11 6.00 16 8 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 9 C -0.10 -3.65 5.40 30.65 0.17 -3.48 16 10 C 0.01 0.34 5.96 30.11 0.18 0.52 16 11 C -0.50 -25.82 5.51 -16.17 -0.09 -25.91 16 12 C 0.03 1.53 5.46 84.65 0.46 2.00 16 13 N -0.93 -53.03 12.74 21.45 0.27 -52.76 16 14 Si 0.94 43.09 26.80 68.60 1.84 44.93 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 18 C -0.01 -0.60 5.59 30.11 0.17 -0.43 16 19 C -0.10 -3.98 5.50 30.66 0.17 -3.82 16 20 C 0.64 15.18 8.66 260.53 2.26 17.43 16 21 N -0.86 -23.58 12.83 -58.53 -0.75 -24.33 16 22 N -0.89 -15.25 8.88 -58.56 -0.52 -15.77 16 23 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 1.25 8.07 -2.39 -0.02 1.23 16 25 H 0.06 1.47 7.36 -2.39 -0.02 1.45 16 26 H 0.15 1.15 8.07 -2.39 -0.02 1.13 16 27 H 0.13 1.12 6.43 -2.39 -0.02 1.11 16 28 H 0.42 6.67 8.60 -92.71 -0.80 5.88 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.03 1.82 7.08 -2.39 -0.02 1.81 16 33 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16 34 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 35 H 0.03 1.15 5.17 -2.39 -0.01 1.14 16 36 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.34 8.32 8.80 -92.71 -0.82 7.51 16 39 H 0.41 5.80 8.83 -92.71 -0.82 4.98 16 40 H 0.39 5.56 6.71 -92.71 -0.62 4.94 16 Total: -1.00 -72.55 322.62 0.72 -71.83 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -1.96 Total: 20.49 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 5.93 Total: 10.97 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -5.04 Total: -126.74 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.05 Total: -21.49 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.84 Total: 44.93 kcal Total: -72.55 0.72 -71.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144143220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.987 kcal (2) G-P(sol) polarization free energy of solvation -72.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds